Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT101153.1 TSA: Strongylocentrotus purpuratus WHL22.335471.0 mRNA sequence TTTTGAAGAGACGCTGCGACAACGTAACGAAGTTGCGGCTCTACAAAACAGACCTAAATTTGGCATATTT ATCGAGAGAAATACCACAAAGAACGCTCCCTTTTACTGCAAGGATCTTAACGCATTCATAAGACGGATTT ACTCTAATTCAAGGTCCTGTCCAGCAAACCGCACCGCTACTGGATTTACCCGCTTGACCTGGAAATGATG ATCAAGGGATGAGCTTGTGATTACAGGCAGACCGTCCGTCCGACCCAACTGTTCTGTCCGTACATGGCAT TAGCAATCAAAGCTTGACTCAACGGCCAGACTAGGAAGGAAAGGGGCGACTCGACGCAGGAGCAGAGCCG TTGTTTTGGCCAGGAAACCGTTATGTTTGATTGCCATTCTCGTCCAGATCGTGGACAGTGCAACATGTGT CTAGCCATGTGTGGATTACTCTCGAGCGAATAGGATCACTTTCTATGAAGCTTTATTGTTATGTGAATCA TTGTGAGAGATAGAGGAAAAATGAGTTATGATCGACAGTAACGATGTTGACGCAGACAAAGAAATGATTA GTTTGTTTATAGCGTGAGAAAGTGGCTTTGTTTTTGTTACAGTCGAGGGAAAGATAAAGTGATAAATTTG CATGGCTGAATATGGCCACAGCTAGTAGAGGAGTGCATGGGAACTACGTACACGGTGGAGGCGCACAACC AGAGCTGATTCAGTCGGCAAGACAAAGTGCACAGGAGATGGCCGATTACTATCACAGCAAGGTGGTACAA AACGGTCATTCTTCTTCTTCTCAACAGTCGGAAGATAACTATTACAGGCCAGGCTCGTCCGCGCAGAGCC AGGGCAACGGATACCAGTCGGGGAGCACCGTATCCAGGGGCGTGAGTACCCCAAGGAGCGACGGTCGTTC GTGGGGAAGGAGCAGCGGGGATAGTGGTAACGGTCAACTAACCACTGGTCAGTTTCGGGCAACTCCGGTG AAGGTCGATTTCCAGACCACCGAGGTAGTGTCGGAAGTATCGGTTGCGGATAATGAAAAGGACTATCACA AGGAACTCATGTCGTCAACGCAGGACTTGCTTGCCAGGCAGAGCCCTTGGCTCAGGAGTAAAGAGGAAGC GAGGCAGTATTGGAGAGATGAGGAGAAACGGAATGTCCGATCTCCTCAACATCGGAGGCACAACACCAGC CCCGACGGCAAATACTTTGAGCCAGCTCTTGGGGTGGTCAGTGCCTCCTCGAAGGAGAGTCATCGAACCC TAGCGTTGACCACAGATAATCTCAGGAAGTTTAACCATGGGGGTGACTTACCCCGCATGCCTCTGATGCA AAACCTGAGGCGTAGCATGAGTAACTCGACGCTAGACATGATCGAGAAAACAGACTTCAATGCAGCAGCT GTTACCAGAGAATTTGGGAGCACATCCTCCATAGATGTCCAGAGCACCGGAGGAGAGAGTTTTTTTAGAA TGCTGCAGGACTACAAGGCTGTGGATGAGCGCAGTCCAGCGCCTCCACAGTTCAAGCAGCTTATCCAGGG TCGTGTTCCCTCGGTCCACGATGGGCGCAGCAACACCGCCCCTCTGCCTGCGAGGGCGGCACAGCAGACA CCGCAGGCAACACCAAAGCAACGCAGTACTACCATCGAAAGAAGCCAAACCATACACAGTCCTAAACAAC ATCGCAGGTACCCCAGTAAACGAGAAAAGAGGGACAGAACTAAGTCCTACTCGAGCGGCGAGCGCAGGCA TGAGGGCTCCTTCTTTAGGAAAAAGGGGAAGAGGGGCGACATTTCCAAAGAGAACCATGATAATAGAACT GCTGATGAGATGCTTGAAACAAGGATCGAAGAAGGTGTTAGGAGGAGAGCATTTGAGCATTTTGATGTGC AGAGCTTACACTTTGAACTTGGGGATTTAACCAAGAGTAGTGACTTGATCGCTAAGGGCAACATGACAAC GGGAGCATCTGCAGCATCGAGGGCCAGTGCTACCAATACACCAGAGGGGAGTGTGGAGGATCTTATAAGC GCCGAAGACCAGGACTCCGGTGACAAGCAGAGCAACGATCTCCTCAGTAGCTGCCCCTTCTTCCGCAACG AGATCGGCGACGAATCGGAACCCAGGGTCACCCTCTCCAAGATGGGCATGCTAAGCACTAGAGCCATGAG AAGGTATCGTCATCAAACCATTCTTGAGAAGAGGGGGGCTTCCGAGCTCAGCATCAACGACGACCAATCC AATTATGTGTGGCGAGGGCCTGTCATAGAGCACATGGACCAAGGGGCCCTCTATTATCGGAAGCACTTCT ACAAGCATGAACACCAGAACTACTTTGGTGTGGATGAGTTCCTTGGCCCTCTGGCCGTCAGCGTCCGGCG GGAGAGGGTGGAGGAGCAGGAGAGTCCAGTGGAGAACAGCAAGGACCATAACATGAGATACAGATATAGG ATTCTACTCCGTTCTAGTGAGCTAACAACCCTACGAGGCGCCGTCATGGAAGACTCCATCCCATCCACAA CCAAACACAATACTAATCGAGGCATTCCACTGCGTGACGTACTAGAATACATCGCGCCTGATCTACCTCT CGCTTGCTTACGCCTTGCCACAGACGCGCCAAAGGTCAGAGATCAACTTCTCAAGATTGATGAACAAGGG GTCACAAATCATTACAAGGTCGGCATCATGTACTGCAAAGCCGGACAGAGCACCGAAGAAGAAATGTACA ACAACGAACATGCAAGTCCAGCATTTGATGAGTTCGTAGACTGTATAGGAGAGAAGATTCGACTCAAAGA CTTTGAGAAGTACAGAGCGCAGCTGGATAATAAGACCGATTCGACGGGCACGCACTCGCTATATGCCATG TACCAGGGCAAGGAGCTCATGTTCCATGTATCTACTATGCTTCCCTTCACAAACAACAGACAACAGCTAC TGAGAAAGAGGCACATAGGCAACGACATAGTGACCATCGTGTTCCAGGAACCCGGCGCTCTCCCGTTCAC GCCCAAGAACGTCCGCTCACAATTCCAGCATGTCTTCATCATTGTACGAGTCCACGAACCAAACACAGAG AATGTCCACTACTCGATTGCTGTGAGCAGATCTAAAGAAGTCCCATCATTTGGCCCTCCCTTGCCAGCAA ATGCCAATTTCCAGAAATCAAAATCGTTTGCAGATTTTCTTCTTGCCAAAATCATCAATGCTGAGAATGC GGTGCACAAGGCGGACAAGTTCACGGCCATGGCGACGCGGACGCGCAAGGAATACCTCAAGGACCTGGCC GCTTCCTACGTGACCTCGACCGCCATCGAGACGGGAGGAGGGGGCAAGTTCAAGCTCTTTGACAAGAAGA AGGAGAAGACTTGCCCCAGGCCTGCCCCAGACTTCAAGGCCAAGGGAGCATTGGTGTGGGACGTCCAGGC TGAGGACTTCAGTGTATCTGACCCTGTGGATTGCTTACTGGCTGTCTCGATGGATATGATGGTTCTAACG AACTACCATACGAAAGAGGTTCTCTTCTCCATTCCTTGTGTGTCTGTTATCGGCTGGACTCCCTATCCAC ATGGATTGAAGCTGTACTTCAATGAGGGTAACTGTATTCGAGTTCGCATTCCTGACCAAGATCTGGATGA GGTGCCTGAGATTGTCAAGAGATTTGAAGCAGTCTCCAACGGAACTAGGACCAAAGAGATCACCTTGAGG CGGAACGGTCTAGGTCAGTTGGGCTTCCATGTTCACTACCAGGGGATCGTGGTGGAGGTAGATCCGTATG GGTTCGCTTGGCAAGCTGGCCTTCGGAAAGGAGCAAGACTTGTTGAGATCTGTGAGATAGCTGTATGTAC CCAGACCCACGAGGAGATGATAGATCTACTACGGACCTCTCAGACGGTCAAGGTCGTGGTGGTACCACCT TGTGAAGATGGAAGTCCAAGAAGAGGAAGCACACCAATCGAGTACATGGGTAACAGTGAAGCAGTCACCC AGCCGGGAGGGGCTAGGCTAGGCTTCAACAGAGGCACAAGCAGCGGCAAAGGACCTCATAAGATCTCCTC ATCTCTGGCTATGTCAAGCAGAGATCTAAGACAGGGATCACTACATTCCCGATCAGCATCCACCCCTGGG CAACCAATCTCCATGCTGCGTTCAGCCCCCAACACACCCATCTATCCTCCGGGCACCACCGAGGAGGGTC TACCCGCCAAGGGCAGCGTGCGCTCGGCCATCTCCACCTTCGAGCGTCGCATCAACGTCGTGGATCCGCC ACCCGATGCTTCCGAGAAACAGCACCCCTACCGCGCCGCCGTCGATTACTGGAAGGAGGTGAACGCCCGC GCCCATCAGCAAGCTAACACCGGTGATGGGATCGCGCCCCTGCCCCAGGGGGGTGGGTCCAGCGGCGGGA GTGGTCACAGTAGGGGGTTGTCCCAGGATTCTGGGGACCGCTCCTTCATGAGGATGGTGCATGATAGGAG GAGCGCCAGGGAGCAGAGGAGGAGACCTGCAGACAAGCAGGCGAGGCTCCGGAGCTCACAGGAGGAGCTG GATCGGATCGGGACTGGAGCCCACTCCAGGCAGGGATCCCTGGAGGACAGTCTCGATAAATACAGGAATA GAGTATACAAAGATGTGACCAAACCTGACTGGCAGGGACACAACGAAGCCAACCTCTACCCCCAGGATAG GGGCCGAGAACAGGACAAGCAACAGCCTCAGTTTGTCACTCCCAAGGCTAGATATCCACTTCATAATGTA GCTCAGGCCACTATAAAGCACACCAGCAGTGGAGATACCCTATCGACCAACACCAGTGACGAGAAGTGGT ACGATGCCGGAGACGATGCTAACGGTTACCATGACAACGGTGTGCCCGTCTCCAAGGATGTCCCCGAGGG CATGTACCGCACCAACCCCGCGACCACGCCCTCCACCGTACCCCTATCACAGCAGGGGATCAAGGAGGAG AATTTGAGTAACTATGCAATGGCTGAGCGCTACAGCCCCACAGAGCAGCTCTACCAGTCACGAAGCAGAG AGGGTATAGACATGGAGCAACCCAGGCTTCAGCGCCCCAACCACCTCGCAGGCATCGTTCCACACCACCA TGCCACGCCTAGCAACATCAGTGACCACTCCACCCATTCCACCCTCTCCGGAGGCTCGGGTACAGGGGCA TCGAGGGACTACGGGAGCCTGAGGGCCAGCAGCAGACAGTCCCCCGCCCGTAGCCCCATGCCGGGGAGGT CCGCACAGAGCCCCGAGACGGTCAGGAAGAGGGCACAGAGTCCCAGGCGGGCGGGGGCAGGGGCGTCAGG TGACTTTGCCAGTTTGCACAGGAGGGGCGGGGCTCCATCTGCATCTTCCAGTAGTAGTATGAGCGAGTCC AGCACAAGCCCTAAGATGGCCAGAAGAAGACCGCTAGATGGCCACAAGTCATCCAACGAGTCCCTCGCTG CCCGGTCACGGGTCAACTCGGCCACCACGCCCACCATCAGGAGCGGCGCGACCACGCCCCTCAAGGCGGC CCACACCAACAATCGGGTCCAGGACGACCTGCGGAAGCTCCTGGCCCCCGAGTCGTACAACGCTGCACTG GAGAGGGAGAAGAAGGAGAATGCTCAACCGATTACGACCCCCATGCTGAACTCGCAGCCCCCTCCCTTGA ACCGGACCGTCTCGGAGGAGAGCCTGCCCAACCATGTGAGCGGTACGTACCCCCGGCAGAGGAAGCAGTC CCAGCCGACGCCCAGGTCAGAGTTCATCCTCACCAGTACGCAGTCCGGAGCCATGCCCAGCCAGATGCAA GCTGAGAAGACCATGTTGCATGGAGATGGCAGACAGACAGGTCTATCGGCCAGTTCAGACGACCTGACCT CCGAGGTGTTTCCCCTCCCAGACACGAACAACTCCGGCCTCGATTGGGACAATCTGGTGAAAGCCGCCAA GGAATATCATGGCATGGAACAATCTGCCTTCAAGTCGATATCCATCGACCATCTCGACGATGCGGATGAT GCGATAGTTGGCGCCATCACCTTTGCAAACAACGCGGCTGTCGACAAGCGCATGAGTAAGAGCAGCGACT CGCTTTCCGGAGGACTGACGCAGAGGAGATCGCGGTCGACAAGTCTCGGGGAGAAAGACGCAGACAGTGC ATACGAGGAAGGGCCAGCTGCAACGGCCGCTCGGTCAAAGAGTGAGCTGGAAGTTGAACTCAGAAGACTG ACGCACCAGTTAAATATGGAACGCAAACAGAAAGAAGACATGCAAAGCAAGATCAGCAAACTCCAGGAGG AGCGGATGAGGTTACAGGACGAATCAACGTCTGCGGCGGTCCAGCTACGGCAGATCAAGGATTGGATTTA CCAAGGGGATAAACCTGTCAAGTAGCCCATCCCTCGGATCATAGAAAATACTAAACTCTGAATGCTGATG TTGCTTGCTAGTTAAGCAAACTGTCAAAAACAATCTAGCTGTGTTGCGTCTGTGGTTTTTGAGAGATCAT AGATGTCTTCAGCGCATTAAACTTGTTCCTAGCTTTATCGTAATCCTGGAAAGATTGCGAAGACCACGTG GCCAAATACAGTGAACCCTGCTCAGTGACCACCTGTGTAGAAGGACCGGACCGCCTGTCTATAAAGACCA AATATGTTTGTTTCCCTTGAACTGTGTTTCTCAATTTGAAACATAGGAACTTGTATGTGAAGACCTCCTG CTCTTATAGACCACTATTGTTGTCTTCCTTGAGAGGTCTTTATATACAGGTTCCATCGTACTATAAAGAT GTCTTTATTATGAAGTCTTAAAAGATCTTTCCAACCCAATAACAAAAGGGTATGGCACTCTTTGATATCC CTTGCCATCGACATGCCAAATGCCTCGTCTCAGTTTAGAAGTGACAGGCACCTATTTGTATTTTGGAATC TGTATGCAATTCAAGCACTTTGTCAGTGAGGTTACTGTAAAGGAGTGTCCTGTTTAGTTATTGTTTAATG AGACTCATCTGTGTAGATCCAGACCATACCCATGTATACAAATTTTATAACTTATTGTCCTTCAGGTATC AAACCAATGACATATGACTTCTATGTAAGCTTTCCATTTATAAGATTATCCTTGATCTGTTCTTGTTTAT CTGGTGCTCATCTTTCTTGACTGTATACAATCAAAAAGTGATTTAAGATTCAAACTATTCAGCTCCGTAT ATCAGAGCAGTACTTTTTTAATCCTTTTTTTTTAATTTGTATGTTTTATTAAATCAAAACTAATGTCACA ATATTTACAGGTCATCAATAATGATTGGTATAGAGAAGTACTTTTAATATCCTACAAGTAATATCTCAAT ACAAATTCAATTGATCAACAGAGTCATTTTGTTGTAGGAGAACACAAACTATATTTTATATGTGATATCC TGGCTTTATTGTTCATTGACGTAATTCATGTTTTCAGTCATGATGATGCAATGATCCTAGGGATCTGGAT TGGTTAATCCTTTGGGGAAATCATGGGGTGGAGATTAAGGGCTTGGGTAGATCATTGTGACAGATGAGAA GACAAACAGGAGGAAGCACAAATATTAAGCCCTGGTTCTTTATGCTTAGGGTTGTCTACTGGAAATTAAC TAATCTTGAAGCAAATCTTCTTTTGCAACCATAGGAAATGCTTCAAAGTAATCTGAGATTATGATTTGCG CTACTTTTAGATGAAGGTCTATGAACTGCAACGACACGAACCAAGTTCATTAATGCGGTGAGATATTGTT TAGGCATGCTTTCTGCAGCTCGATCTAAGCAGCTTCTGCAACAATATATTAAAAAAACTTCATTGTGTGA AAGTCAGTACACAAAGTTGATCATGTAAGAGGTTACCACTTTTCTTCTCCGTTATGACAATGAGTGAAGC CAGTTGGGAATATGGTTTAGAAGGTATTATGTTTGAGCAAAGGTTATACCTAAAGATAGGTGTAGAATTG GTACATGTTTGAGTAGAGGTGTAGAGGTGTGGTGGTCTAGTGGATACGTCATCGGACTGTGGATCACAGG GTCCGCGGTTCATCGCTGCTTCACTAATGTCCTTTGACAAGACATTAATCTACATTTGCCACTTCCCACC CAGGTGTTAAATGGGTACTGGTAGGAATGAACTCCTTGAATGCTTTGAGCACCGAAATCTGTAGCCTAGC AGAGCTGGTGTATTATTGGAGAGCCTTGAGCACCTTGCATGGTGAATAAGGGCGCTATGAAAATAACCAA TATTATTATTTACACTCAAGTGTTTACGAGGTAGATTTTAAAAGGCCAACAGGGCACATGTATACTATCT GCTGAGCAGATAAGAGAAAACATGTTAAAACCTTGCTGTTGATGAAACATACTGTATTGATAAGATATAT TGGCCACATAAACATTCAGATTACCATGATCCAAGTTGGTTAGTAAGAGCAACCTGAGGCTTTCTTTTAA GTTTTGACACTTGCTACAGGTCCTGAAGAAAAACGAATTGGATATATTTGATTGTTCTGACAAGTATCTA TTCTGAAACCAAACTTCCGGAAACTCATAGCTCCACTTTAGAACACACCCTTGTGAAAGGGAAACTCAAA ACCATAGTTCAGGAAATCAAGGTCGGGTGAGGAAAATTGTAGAAGAGTCATATGAATACCTGAGGTTTTT AAATTTATTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds