Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998240.1 PREDICTED: Strongylocentrotus purpuratus SUN domain-containing ossification factor (LOC754542), transcript variant X2, mRNA GTTAGAAAGAGATGACGCGATGCACGATCTAGGTTGTCGCATTGAAGAGGAATGGTCACCTAGGATAGTG TGTGTATCAAGATGACGACTCTAAGTTGTCTTGTAGCATGGTTGTTCATCTACCTATTTGCAGTGTCTTC GTTATCACTTTGTAGCATCAATGGCAATGTGGGAGAGGCTTCACAAGATGGACTTGCTATTGGACAGTCA AAGCAGACTCATGCACAAAAGAACCATGTGAGCGCACTGGAGCTTCATATGAGCAATAGTGAGGGCAGGA AGAGAGAGAGGGAGGAAGGAGTCATTGAGGATCAAGCTCAACAGAATTCAGCCAAAGAGCAGGATCCAGG CTTGTTTCCATCAGAGATCATTGATCAAGATGGAAAGCATGCTGGACCACTGCCATATGAAGAACCTTCA CCTAAGACTCTTAAAGAGGATCATATATTTAGTGACAGTGTCAAAGATGCGGTTAAAGAAGGGAACGATG GATTGTTAGAAAGTGATGAGGGAACAGAGAGATCACCTATCGATGAAGATATAATAAGAGAAAAAGACCC CAGCTTATCAGACGGTGAACCTAGCCATGACATTGACCCAACACCTGTTAACATTGATACAGAAAGGTCA TCTGAGGTCAAACTGCATCAACATGATACATCAGGGCCTGATAATGAAAGCAACACCAAAGATGCTGTGG ATGATCTCCAACAACAAACACATGTCGTTCAAGAAGAGGCAGAGGAACATAACAACATTGCTTTAGATTC TGATAAAATGGACAAAAATGAAACATCAAGTTTAGATCTAGATGCCGATCCAGATCCAAATCAAGCATCC AAACCTGAAGAAGAATCAATAGATGCCATGATAGAGCTGGATCAGGATGAATTAGATGATATCAAGACAG AGCTGGTCAATAAAATTTCAGAAGAAGAAGTAACAAATGCATCAGCAGATGTGTCTGAACTGAACTCTGA ACTGCATAGTGATGATGAGAAACTGGAAGATACAAGCAAGGGTGAAGAGAAGGATATATTAAAAGAACAG TTAAGTACAGAAGCCCTTGGAGAAAAAGGTGACATCAAAACAACAGAGGATGGTGAAGATAAAGGAAAAG AGACATCAACGGTTGATCAGCAGATAGACATTGTAGATGAGAAGGTCAAGAGAAAAGATGAAGAGAAGCA CAAAACACAGAGGAAAGGGGATGAAAAAGAAAAAGAGAAGGAAACAGAAGGAGAAAAGGTTGAAGGAGCA AAAGAAACAAAGGAAGAAATAGTTGAAAAAGAAGAAAAAGAGAGGGAAACAAAGGATGAGGAAGATGAAA GAATAAAGCAAGATCAAGAGGAGAAGAAGGACGTAGAGGCAAAGCCTAAAGTGGAGTCTGATGATGAGGA GGTCAAACCTAAAGAAGACGGTACCGAGGAAGAGACAAAGTCTAATGTGACAGACACTGTTGTAATCAAA ACTGAGGAGATGCCATCGTATGATGAGTGGAGGGAGAAGAAGTTACAGCAAGCTCAAGAAGACTTTGATA GAGAATTGGGCCAAGGTGAGCGGAACCCTGTTCCATCTCCAAAGTTCAATTTGAATGAAAACAGTAAGAA CCATGCATCAGCTGACTGTGGTTCCAAGATCCTAGGAACCAATCCTGATGCCCAGAGTGCTTCTGCTATT CTCAACAGTAATAGGGATATCTATATGATTAACCCTTGCTCTGCCAAAAGCATCTGGTTTATTGTAGAGT TGTGTGAGCCCATCCAAGTAAAGTTGATAGAGCTTGCCAACTATGAGCTTTTCTCATGTGTTCCTGAAAG CTTCAGAGTTTCTATCAGTGACAGGTACCCTGTGAGAGAATGGCATCAACTGGGTATTTTCGTAGCTCGA GATGAGAGGTCTCTTCAGAACTTTCCTCTCAATGAAGAAACCATGTTTGCTAAGTACATGAAGATTGAGA TGCTTACTTTCTTTGGCTCAGAACATTTTTGTCCTCTTAGTGTACTCAGGGTGTTTGGTACAAGCATGGT GGAGGAAATAGATGATGCAGAGGGAGTCAACTCAGGGACTCCAACAGAACAAGATGTGCTGCCTGTCCAT CCAACACCATTAGCTGAAGATCTAAAGGGGAATGGTATACTAGAAAATGCTAAGGATGCTATCTTCAAGC TTGCAGAGAAAGCTGCCAAAGTTTTAACAGGGTCCAAGTCAGATACAGATGCTTACACTGATAACATGAC TGATGGTGCTACAGATGAGATATTGATGGAGAGAAGCCTTCCTGATGACATAACAAAGGATGACACTCAA GACCCTGACAATGAGAACTTCAATGAAACTCACAATGACAAATGCAATGGACAAGATGTGTGCTTTCAGG AAAACTACTCCACTATGTCTCAACATTGCTGTCTTAGTCTCTTTGCCCAGACTGCTGGATCCATTCTCAT ATGTTGCAAGGCACTAAGACGAGGTCCTAAACCTATCAAACCAGAAGAAGAGACTGTAGAGGAGACAAGC AATCTCCTTTTGCCCAGTCAGTTACCCATGGAAGTGATTCAGACCAAGATAGAAAATACACAAGCAAAAA TAGAGGGCAGTATTCGGACGTCTATTGTTTTAGAACCAACTCCACCTGAAATGTACCATGGAGAAGATGA AAAAATAGAAACCAGTTCTCCTCCTGTGCTTATCTTGTCAACAAAGACACCAACAGGTGCCACAAAGCCA AGTGAGACCCCACAGTCAGACATATTAGCAACAAGGACCAAGACTGAAGAGATACTGCATACACCAATAG AACAAACAAAGAAAGTCGTTGATGATGTTAGTGGTCAGACTGATAGCACTCATGAGGAAGGAAAAGAGAG CGAATCTGACATCATTGTTAAACCCATTCCGGCCCCACCGACTGTGGATTCTCTCAAAGAGGAAAGCACA AAAGAGAAAAGCAGTAGCATTGATGGGCATGATGTTGAACCTTCTGCAACTGAGCCAAGCAAATCAAATA TAAATAAAGAAGATCTTGCTCCTCCAATCCAAACACTTAAGAGGTCTGAAAGAGAAGAAAATGAACAGCC TACAGGACAGACCTCAGAGAAAGATACTGCCAAAGCTAATGCTGCACAAGATGTGACCTCATCTAGCCAA AATGTATCAGAATCTGAAATTAATGGTAATGTCTCAGAACAACTTACGGATAAAGATCCCCAATCCACAG CTGATACCAAAGAACAAAATGGTGCAAATAAGAATGTTTCGAACAAATTACAAGAGCCAAAACTTGAGAT GAATGAGTCAACAAAGGTCTCACCATCTAGCACACTTGGTGAGAAATCAACCACTGTGACTAATAACAGT AAATCTGCAACACCAGATGTAGGAAATGGGTCGTTCTCTCCAAGTGCTTCAAGTTTATCCGGGTTAGGCC CTCTTCCTCATGGAACCCAGAAGGAGTCAGTACTGATGAGACTCAACAACCGTATCAAGACACTGGAAAT CAACATGTCACTCAGTGGATTATATCTAGAGGAACTCAGTCAAAGGTATCGCAAGCAGATGGATGAAATG CAGAAAGCTTTTAATACAAAGATCAAGAGTGTACAAGAGAATGCCCAAAAGGCACAAGAAGTTGTTGTGG AGCGTCATCTCTTCTTGATGTTATGTGAGGTTGTTGTCATGGTGATTCTCTTGACCTACTGTCTGAGAAG GTCCGCCTCCCAATCATCTCTCACCATCAATAGTCCTGTTGGCATGGCAACAAAGTCGAGCGGTAAGAAA CCAATTGAGAGTGTTGGTAGGAGGAACTCTGATGGTCTGATCCATGTACCCATGAGGAATAAGATCACCT TGAGTCCTGGACTTGGGACGGAATTTGGCTTCATGAAGGATATCGCAAATTCCAAAACGGGTAGCTTAGA TGATCTGCTGATCATTGGACCCACAACACCTCTCAGGGAGGCTCTAAGACAGGCATCTGAACCGTCCAAG CAAAAGAATCGAAACAAGAGTAAAGGGCGACATAAAAATATTCAAAGACCATCTTCAGCAGCGTCGGCCA CCTCCAATGAGAATGTGTACCAAGGTGCTGCCTCATCGTCATCATCAAACTCCTCCATAGCCTCCACCCT CTCACTATCATCAATATCCAGTAACAAGGGGTTGTCAGGGGCAACAAGTTCTAAACATTCCACTGCAGGA CTTCTATTCAGAGGCTCCGTTGAGGTGAAGAAAGGATCACAAGGGGGGCAAACCAAGCAGGGTGTCGGTG GTAAGGGTGGGAGTCGGCAAACACAGAGGGGTGCACCTGAGAATGTAGGACCGGTGAATGGGGTGCATCA GGGGGATAAGAATAATGGGGTTGGGGTGAATGGATACAGTGGGGCTGCTAGTGGGGGAGGCAGTAAGAAA AATAACCCGTGCTTTAACGGCTATGGGAAACGGTGATGAGTGAAGAAGATTATGGACACAATCTCCTTTC TGCAGCTTATAAGAGTTTGAGAAAGGAAAGGGTATTAGATCACCCAGTGTGGAATATGTGATTTTTTGTA AGACAGTTTGAAGACAATGTCATCATTGATTTGATGCATCAAAACAGTATTTGTGAAAATTTAAAGCTCT TTTAATTACATTGCACTCAAATAAGTATTAAAGCCAATGATTGTTATATGTGATGTTGTTAATATGAATG GAAGTTTGTTGTTATCACGTGTCAAATGATAAAAGGGACTAGGCCCTACTCTTCTTTCAATGCTATTTTC TGTCAGTTCAAACTCAAACCTTTTTGTTATAATTGGCCACATTGCTCACTTGCAATTGATAACAAACTTG CAACTTTTATCTTGTTGATAGAGAGTTCTGATTAATATGAAGTTGTGATTGATTTGGATCAATCACAAGT GCTTAGAAACATTTGTATTAAGCACGATATAAATGTATTGTTATATTGCATATTATTGTAAGTGCTGTGA TATAGTGTGCTATGAATAGCATAGCTAAATGCCTTATAATAATAATAATGTAATTTATTATTAAGTGTTT ATGAGATGGGGTTGGACATCAAGATATGAATATGTTAATTCATTGAAACTTCTTTCAGTTGATCATTGAT TTTTTAAGGTTTTTTTCAGAAATTTTAGATTGAACTCATGTAGAAATTTTTTTTCTTCCAGTGACCTATG TTTTTATTTTGCAGTACTATCTAAGCTTGTAGACAGTTTGTCATAATTTAAGACACAAATGATAAATGTG AGGCAAGCATTCTTGCATGATGAGAAGAGCTGATTTTCATTTATTTTTCAAACAAGAGCTGCATCTGTTT CTACACCGGGGGTATTCTTATTTTGTTGTATCCATCATCTGATTACTGTACATGGCATTTATGAGCATTC TTGTGTTTTGACTTTTCGATGCTGCGATTGTCTTTTTTTATGAATCATTTTCTACAGCCAATTTATTTCC AAATACTGCCTTGTGCAATTTCAAGAAGTCACAACCATGATACTTCATTATAGTCATGATGATAAAGAAG CACTGTTACATACCGGTATGTATTCATTTAGAAACAGTAACTTCATGTTGTATATGAAATACTGTGTGTA TAATGTGCTCAATAGACCATTTCGTAGTTGCACATGGGTAAAATTACCCCAAATATCCACAGATCTTTTA CTCATGGAGAAGTCCCACTTTGTGTATTTTAGAAAAATCAATGTCAAAGTCATGTATGTGCTTTATGAAA ACTTTTGATTGCCCTCTTGTATCATAACAATGTACCGTAGGTGCACACATGAATAATGATTACATAACAT AAGCACATATCCCTGTCGGTGGGTTTTACAATTCTATCAGAAATGACCTTTATCTGCCCATGCGCAGATA GTATTTACAAAAAGACTTATTATAACAAGCTCAAACATTGCACCCAAGTGTTCATATTCCTGTTTTATGA TATTAGTCATGTCATGATCATTTTGTGAATATGCCCTCTCATCGTGATGGGTCACAAGTAAATTGAACAT TTCTTTCATTAGATAACTTGTGAAAATTGTTTTATGGTCCAACATAGGATAAAGTGGTATTTTTATAATA CTAATCTAGTGTATACCATGTATCTATTGGATGTAGACTCCAAGGTGAAATGCAATAGGGTTCATTTCCC CATGGCTAGTAAACCATTGTCTGCTGTATACTCCAAATGATCATATTTGGCTTTACTGCAATGTATTGTA AGAAATAAGCTTTTCATTTGATAAGTACTTACATATTATATTGATTGTAGTGTACTTCTCATAGCTAGAT ACCTTCTAAAGCCTGCTTTATGTTTATGTACAAATGCTGTAGTGTTCTATTGGTGCTAAAAGATTCAAAG AGACATACACTCTCTCTCAATCAAGTGATATCATAGTTCTATGATTTCTATTTCGTTTTGTAAGAAACTG TCAGATTGGAGATAGTAAATACAGAGAGCAAATTTGCCTTTTGCTATATATTTATCTGAATATTTATTTA AAGTATTATCTTGTTGAAGAAAGGTGTCTCTTGTTAGAGTTCAAATACTGTATCACTATATTTTCATCTT CATATTATAAATTCAAAGTGGACATTACTTTAGTTTGATCAATGTGTGTGATAAATAGAAGAGATTCTTA TTGGCATTCCAAGGATGGTTATTGTATACCATCTGATGTATTTGGTCTATTGCCTTCTTTCTTTCTTTCT CTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTCTTCCTCTTCCTCTTCCTCTTCCCCTCACATCTCCT TTTGTAATTGGTATTTTGCTTTTGCTCATTTTCAGCTTGGAATTTGTTGTTGGAAAATGCAGAAAATATA CGAATATCTAGTTACTGTAAATAAGAATGCAATGTGGACAATGTCTATCAATCATAACAATTCAAATTGG CTGTTCCTGATCTGTGAACATGACATTTATACTTATTACAGTGCTATGGAATGCATTGCTATCAGAATGA CGCCATATTTGAATTGAAAGCTATGCGGTGAATGAACAGTTCTGCAGACATCTTGCTGCAGTTGTTTATG TCCTTGATTCAACATTTATTGTATTAACATATTCTTTATAGATTACCAGGTTTTGATAATTGCTGTTGAA ATGTACTATTTTTCTACCCCTTTTTCCCTTTAATTAGACTTTCTAAACATCCAATAAGATTTTCTGTATT TTCTAGCAGCAATGTTGTTCCCTAGTTGCAATCAAAGTACTGTTGTGTTTATGTCATTGCAAAGCCATGT TTGGTTTTTGTTGTTATTATGCTTGTAGAGAACATTTTGGCGATCCAATTCTTTTATGTACAATATTTTA TTTATATATCAAGACATTCTTTATTTAAAGTTTATTGCTTTAAGCTTATTTACATTTTGTCAATGCTTAA TTGTATTAGTATATTTCATAGTAGTTTGTTTTATCATAACATTACCTAACAAATTTGAAAGGGGATATCT CATTTATACTTGTGCATCCCCAAGTGCTTTGTAAAGACGTGTATTAAACAGGATCATTACAGAAGTCTTG CTAAAATATGTGATAGAAGTTCCATTGGAGAATGTTGTATCTCTGTTACTTGTAGACTTGAGTGTGGAGT GCACAGTTTTGTGTACCAGCAAGTTGTGAGCAGTAAAAATATATTAAGAACAGTCTGACTGCAGCCATTA TTGTAGATACATAGATGTGGAAGTAGTTAAGACATGTTTAAGCCTGTAGAGTTACCAATAACTCACCTAA TTTGAAAATGAATTGGGATTTTACAGCTCAATTTTTCATATTATGATGTCCTTTTGGCTTTCATACATTA CTCCTGCCCCCACCCCTTTGTCTGTCTGCGTTGCTCTCTCTCTCTCTCTCTCTCTCTGTTTCTCTTTCTC TCTCTTGTTCTCTTTCTCTCTCTATCTCTCTCTATTTCTCTCTATTTCTCTATCTCTCTCTCTCTCGTTC TCTCCTTCCCTTCAATTTTCTTTAATTGATTTAACAGCTGTGCCTTTGATTGTAAGAAATAATGTTTATG TTTAAATAAGTCTAGTATGATATAAAGAATTAACAAAGTTACCATTTGTTATTATGAAAAGCATTTTTTG AATAGCAACAGGGTTTAACACTGATTATAATATTATAAAATGTGTATCCTTAAATATATTTTGAGGATTC TTTATATACACTCACTGTAGACATATTGCACTTACTTTGATCTCTGCAATATTTGATCTCTCCACAAATC ACCACTATGTCATCTGTCAAGAGCCTGAAGGGCATTAACTAATCCCTTTTCATTAATGTCCTTGAACTCT CAGCAGATTTACTAGATATGGAAATATAGAATGAAAAGATGATTTTATTGATGTAAAAATGTTATATATT CAAGAGTTATTATTTTTACAAGGGATCCACATCATTGATAAAAGTTGTAAAAATCCTGAGATGGAGATGT GATATTTGTGATTGTTTTCACCTTGCATTTTGACAATAGTAAGTTGTATATTTGAACCAATCAGAACAAA TCATAATTATGATGTTTGTATGTGATTCACTTTGACTTGATACTTCTGTTTGGTTTACACTCATAAATGA AAATTGTACACATGTGTGTGGGTCTGTAGATGTTTCCTGTTGATATGTTATCCCCAAACTTTTCAATTAT AAAAAAAAGTTTCATGATTGTTATGTGAAGAGTATTACAAACTAATAAAATGCTTTCAATTACTAAAATT AAATATAAAGTCAAAGAATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds