Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997861.1 PREDICTED: Strongylocentrotus purpuratus serine/threonine-protein kinase N2 (LOC582022), transcript variant X1, mRNA CCAGTTGTCACGTGACTTCATCGCTGTCGGTTGTTGATCAAATTACACGGACGGACTAGGGATTTTGAGG GTATTAATGTTCTCCAAAATCGATGTTTGAGTTAATACCAGGGACATGGAATAATGTCATTTAAGGAAGT AAGAGAATCGAATGCGGAATCTACTGTGATTTTGACATCGCCTGGAATTTTAAAGGGATAATTTCAACTT ACAAGGTGTGATCGCAAACGGGTTGTGTGTTTGAGCACCGCACCTACCTGAGGGAGAGCCATTCGCTCAA AGACAACGCCCGGCTGAGCTACGGCAGCGGTCAATACATTGTTGTAGCCTACGCAGCTGCGGCCCACCGC GGGTAGGAAAAGAATTCCATTCAGATCGACTGCTTGAATAACATGGCTGCTGATTCGAGTGCTGTTTTAC CACAGCACCATGGTGACACTCTAGGGACCTACGTGGAGCAGTATGGCGGCCATGAGATCCTGGACCTGTC TGATGCCAGCTTCCAGCAGAAGCTGGAACAGATCAAGGACCAGATCAAGAAGGAGATCCGCAAAGAGCTC AAGATCAAGGAAGGGGCGGAGAACATGCGCAAGGTGACCACCGATAAGAAGAGCCTGGCCAATGTGAATA ACCTGGTCAAGCAGGCCAACGCGAGGCTGCAGGAGCTGCAACAGGAGCTGAACGAACTCAATGCAAGGAT AGTGGTCAACACGGAGGATATGGCACCTTCAGGTGGGGAGAGCGACCCCCTCTCGCCGGACCAGAATGAC GCGCCCCCACCCAAGCCCAACCCTAACAGCCGCATCGGTGCCCTGGAGAAGCAGCTTAACATCGAGATGA AGGTGAAGCAAGGGGCGGAGAACATGATCCACATGTACTCCTCCGGACCCACCAAGGATCGCAAGCTCCT GGCTGAGGCTCAACAGATGCTCCAGGATAGTAAGACTAAGATTGAGTTCATCCGCATGCAGATCTTGAAG ACGCAGCAGGCGCAGCAATCGCGGCAGATCCCCACCGGGGAGAAGGAGGCAGGGGAGGTCTCTGATATGG GTTTCCGGCGGACGTCAGCGGTTGAGCTTCAGCTGACTCCTATTGAGTTCCGTGTAGAGGAGGTGAGACA TCATTACAAGGTGGAGCTAGCCCTGGTAGAAGGCTTCAAGAATGTTATCAAGATGTACAACAATGCTAAG ACTTCAGACAAGAAAGGATTAGCAGAGGCACAAAAAGGTTTGGTGGAAGCCAGTCACAAGTTAGATATCC TTAGAGAAGGGCTTGAGAAGAGAATACAGGAGCTACCTCCAGATCAGACCAGATTCAATCAAATCAAGGA AGAACTCAAGTCGGGCAAAATAAAGTCTGACAACCCCCTCCCTAAACCTGCTGCCCTGACCGGCGTCCTA GAGGTGAGGATTATGGGGTGCCAGGACCTGCAGGAGATGATCCCTTACAGGGCCAGGAACAGCATCACCT CGTTGAACAGTCCCAGCGAGAGCAAAGGGGGCATCCTCAGGGGGAAGGCATCCTTCCATGGCAGGAGCAG TTCACGATCCTCAAGCACAAAAGAAGAAATATCAAATGAAATCAGTGCCATCATGAAGTTAGATAGTGTA CTAGTTGGCCAAACACCATTCAAGCCTATTAGCAACCAATGCTGGGATCAGAAGTTTCTCTTCAATCTAG ATAAAGCCCGTGAATTAGAGATCAACGTAAGATGGAAAGACCAGAGATCACTGTGTGCTGTCAAGTTCCT CAGGCTGGAAGACTTCCTTGACAACCAAAGGCATGGCATGTGTCTTAACCTAGAACCTGAAGGATTATTA TTCACAGAAATCACATTCACCACACCTGTGATAGAGAGAAGAACTAAACTGAGGAGGCAAAGGAAGATCT TCCCCAAACATAAAGGAAAGAACTTCCTAAGGGCAGGTCAGATGAACATCAATGTAGCTACATGGGGGCG CTTGATGAAACGGTCCATCCCATCCTCCCTCACTCCTTCGGGGACGTCGCCCCCGACAGCCATCAGGCCC CGTCCCCCTATCCAAAGGTTGAGCTTCGGGGAGGCGGACTCGTCTGAATCAGTAGGAAGTAACTCGCAAG AGGGCGGTGCAGGGTCACCGTCAAAGGACAAGATGGGCGGAGTAGAAGTACAGGATGCCCTTTCATCATT TGACTTCCTCAACAATAGTTCCTCAAGCTCACCCAAGGTCAGTTCACCCCTGACCCCACCAGCAGCAAGA TCCTCACCCCCTCCGTCACCCCTGAGCCAGACCCAGGGACAACATGGAGCACAAGAAATCTCGGCCATGG ATGACGGAACCCTGATGACGTTGGAAAACTTCCGGTTAATAAGTGTGTTAGGGCGTGGTCACTTTGGTAA AGTGCTGCTGACGGAGTACAAGACAACGGGGGAATTCTTTGCCATCAAGGCCTTGAAGAAGCGCGATGTG GTTGCACGAGAAGAAGTAGAAAGCCTCATGTGTGAGAAGAGGATCTTTGAAGCTGCTAACTCTATCCGAC ATCCCTTCCTGGTGAACCTGTTTGCCTGTTTCCAGACTGAACATCACGTGTGCTTTGTGATGGAGTACGC GATGGGAGGTGATCTTATGATGCACATACACAATGATGTCTTCACTGAGCCTCGTACTGTATTCTACTCA GCGTGTGTGGTATTGGGTCTTCAGTATCTCCATGAAAACAAGATTGTGTACAGGGATCTGAAGCTGGACA ACCTACTCCTGGACCAAGACGGCTTCCTGAAGATTGCTGACTTTGGTCTGTGCAAGGAAGGCATGGGGTA CGGGGACAGGACCAGTACCTTCTGCGGAACACCGGAGTTCCTAGCCCCAGAGGTGCTGACGGAACCCTAC TACACCAGGGCGGTGGACTGGTGGGGGCTGGGTGTACTCATCTTTGAGATGCTGGTGGGAGAGTCTCCGT TCCCTGGTGATGATGAAGAAGAGGTATTTGACAGCATCGTCAACGATGAGGTGCGCTATCCAAGGTTCCT CTCTACAGAAGCTGTAGCCATCATGAGAAGGTTACTGAGGAGAAACCCAATGAGGAGGCTGGGTTCAAGT CAAAGAGATGCAGAAGATATCAAGATGCAAGGTTTCTTCAGGAATATCAATTGGGACGACCTTCTCATGA GGAGGGTGACTCCTGCATTTGTACCTAAAATAGCAAATTCTGAAGACGTGAGCAACTTCGATGAAGAATT CACGGCAGAGCATCCAGTCCTAACGCCGGCCAAGGATCCACGAGAGTTAACCGATGAGGAGCAGGAGCAT TTCAAGGATTTCAATTACATTGCAGACTGGTGCTAGCTAGTAGGGTAACACTTCTGTAGTGACACCAAAG TCACTGTGGGACTTATAGACAGGGAATGTTGCTTGTGCTTTGTGGATACCTCATATGGATGACTCAGTTG AAGTCACATGAAAGTAATTGAATGGGACTACAAAGAGAGAGAATGTTGCTTTTGGTTTTGGGATACCCTA CTCGAATCAGTCCTCCATTGTATGTGATGACACCAAAGTAATTTTATGGAACCGCTGCGATGGACGGCCT GGAGCTTCTTCAGTCAGACCTCAGGAAGGGTTTAGAAGTGGCGAGTGAGAGAAATTAGTTAAGTTTTGAA GGCTACTTCGGAAGAAAGGTGTTCAGATACTCATAGGATCTGCACTGCCTGAGGACCAAGAAATGACTTC ACCTAATGATGTCTACATATACATGTATGTTGCTCACACAGCAGCAACCTTTTGTATTTGTGGGTCGGCA TAGGCAGAGTGCCTGTGGAATATCAAGAGGACCCCAGTCATCTTTTGCTTAAAAGCATACTATGTAAAGC AGTGATACCAAGATGACAACATGGACCTACAATGTATGTGTGACCTGATAGCCCTTATCAGAGGACTTCC AAGGAATCAATCAGGAAAGATCAATCGATGTCAAAGCAACAGCAGGGTGTTAAGCCTAAGTTTGGCATAG CAAAGCTTTCAACCATGACTTTAAGTTTTACAATACCAAGTTTCTTGAATCCTGTTCCAAGCTCATGGGT CATGATCACTTGTAACTTGTCACATAGATAGAGAATCATAGATATGTGGTCAATGTCTTTAGTTTTACTC TCAAATCTCTCGTCACATTTTTCTACAAATAGACACAAGTGACTTTGTAGAGAGGAGTATATCACCCATG TACAATTCAACGAATCACCTTTCGTCCGATGACTGGCTATCCTTGACGGTTGTAACCTGTGGTGCTACGG CTACGATGCGTCAATACGGTGCTTGGATCAAGATATATGAATTTGATATAAAATATATATATATATATAT ATTGGAATGTGTTTAAGGAAGGATATATATATATTTTGAGGTGATACAATTGTTGATAAGATGTCAGATT TGGTTCTTAGATCATCGCATAAGCTTCCATGTATCGATAAGCATACCCATCATATCGCTACACCTTGCCA CGCATAGATAATGTTATACTCCAGTCACGGCGCCAGACTGACTAATAACCAAGAGGATCGTGGTCTTGAA AATTCTCTTTTTTTTTTAGAAACGGTAGAAAATTACTTGTTTCAATAGGCTATTGCTCGCCATTCTGTAA GATTCGTAGCTCTGAAGGAATTGTAGCACGGCAAGCAAAAGCTTACAGAAACAAGTATTTTTCCTACTGA TTGCGAAGAAAGAACTAACTTTCAAAATACATCTCCAATCAGATGAACCTCTTCAGTGATTCAAGGATCT TGGCCATTAGGAGTGATTTAATTTTATTTGGGCTGTTGTTTGTCAGGTGTTGGTTTCAGCGGTGTGCCTG TGGTATTAGGCTAATTCCCACTGCTGATTGTTGCACATAGTTTTTCATATTGCATGGTCATCATGTTAGG AATTTGGTGAATAAGTAGGGGTAGTTCAAGCTACTGCAGTGACACCCAAAATCTATTAGAATATGCCCCA ACCTTCATGAGCTATTTCATCTTTGTTCCGATATCACCTTATTAGGTATACCGCATTGATGATGAGTGAC ACATCGATTGATGTGCATCAGAAATTGTTGCATAACAAGAGCTTTTGAGATGTTACCTCAGTGGGATAAT ATATATATATGATGAAACAGGACCATACAAACATGTTTTCATATATGTTTTGTGGAATGCTAGAGGACAA AAGAGCCGTGTGAGGAACCTTTTATTCAGAGTGATCACCTAAAAAAAAAACGATTTGCTTCCTTCATTAG AGTCTGTACAAGCAGTTTTAATATGAATCATTTATAAAATGATTGCTTTTTGGGCCTGATGAAAAACACA TTTTTCGATTGAGGGTGTGTTCTGAAGCCCCTAAAAAGTTTGTTCATGAGAACAGCCCCCAAATTTACTT CCTATGTTAAATGTAGGTGTCAACTTGATAAAAGATGTAAAAACAGAAAAATGTATGTGCCCTGCACTGT TAGGTATTGGTTTGGATATTCAATGGAATAAGGCAGCAGTTTTCTTATCAAAGGCTACCATTTTTTGTTA CAAATTGGTATCGATCAAGTTTTGTTGGTTTTGAACGAGATATTTGATTGGTGTATTTAATGTTATGAAT AAAAAGGACTTATTAATGTTTCCATCCACATTTGACAGTACTTTATCACTTGATATTGTAGGGATTGGTA GGACTTGTCATTGTGCCAAGAACTGCAAAAAATTGTATTCATTTCCGCTTCTTGTTTTTCTTATTTCAGT TGGACCTTTGGTCTCTCTGAGAAATCTCTGGGGATATCTCACAACTTTGGCCAAATTTGTATTTTGTAGG ATTTTGATTATGAAATATACTCTCACACATTTGTGGTGATGTTGTTGCCAATTTAACGAGACAGGCACAA AAGAGGTGCATATTATTTGGATAAACAAGTATGTATGCATCTGATAGTACCTTGGTGTGTTCTCCTAGTG TGTGTTGGGAATAACGCTCATAACCTGTGCCTTTAATTTCAAAATGAGTTGTTCTAAAAATGATTTTTAT TCGGAGGCACTGTCTCTGTGTCTTAAAGGTAATACACATTGTTGCTAGAAGTCAAAAAGATAAAAAGATT TATCTTCATTTTTTCACTTAATTTTGAAATACATGGTTTCCCTCATACATGAATAGCTTTTGAAGCTAAA TGAAGGGAAATTACATTTATGTGGTCATTGATTATATAGATTCACGAAGAAAACATGTTTGACCAAATTT ATGACCTTGACTATTAAACTCTTGTGTATTACCTTTACGAACATACTCATGCCTGCCTGGTTTGTATTTG TTGAGCACTTTGTGTTCATTTTTGTTATGAAAGTGTTTATTAGTTTCTAAATTTCCTGATGCCATTCACA AGTTGCATCAATAGAAATTGGCCGATGACACTTGAAAATGAAACATTTTCTATTTTAGAGAGTAGGAATT TAAAATCACAATTGTTTGATATGTGAAATTGATAATTGTATGACTTATGGTATCCTTTTTGTACAGTACA CTTTATTTCTATCAAAGTTTTTTTCTCATTTTTTTTAAATTCCAGTACAGGACTCTATAAAGGCATTTTA TATCATATTCACTATTTTGTGTGGATCAGCTATTTATTAAGATATTGTATTCAAATTTATTGCTTTGTCT GAAAATTGGCTATTTTGAATATAGTCTTTGTAGGTTTAAATGCATTATAAAATGTTTATTTCAATGTAGT TATTTCTAACTATGTTTGGAACACATGAATTTGTAAATATTTTGTATATTTTTCTGGCTCTCATATCTCA CTTTTGTGATGCAATTTTTTTATTGGGAGAAAAAACGACCAAGAAGAAAAACTTATTAGGAGTTTAAAAA CTGTTTTCTCGTAGAAGTGAAACTGTATTGCTGTTTAGTCCCATGTCTTCCCTGAATGGAGTGGTTTCCA ATTCTGTGTATTTAGTGGATTGAAACACTGAATGATAAAACGGACACCATATCTCTTTGTTGTAAAGTGT AAGAGATGCTTGTGTCAAATTATGATACGACTCTGGAAATCGGAATCGATACCATTCACTTTTTTGTAAT GTAAGGCACAGTCGGAAAGCTTGTTCTTTAATAGATGTGTTGTCAGAAAACTTAAATGAGTAAACCCTGA ACAATAGATAAGCAAAGTTTACACCAAACACCTAGTTGGTGTTTATAGAAGTGTGTTGTTATGATTATGT TTTCAAGAGTGGTCCTAGTGTCCTAGTTGAACTCTCATGTAGTCATATTCAACACCAAATATTGTTGGTG TAAAGTGCTGAATTTAAATAGCAATGGTCAAGTCTCTACTCTCTGTCGATACTTAAGTGTTTGTTTTAAC ACCAAGGTCAGAAACAAACACCTTACTCAAAATTATCCAGTGAATCATGTGTTGTTGCATTTCAAGATTA CCGGTCAGAGATGTTTTTGTTTGTTTTTCTATCTCATGTGTGTAAAATTCATTATTGATGAATTTACATG TGAAGGTGTACATGTCCCCCAACTATGCATTTCTTCAGGTTTTACGTTTAATAGTCCCCTCTGTACCTAT CAAAAAGTTCTATATCATAGGTATATTGGTAGAATAAATGCTTCTCTTTTTTAGAGGAGGGGGAAGGAAG AGGAAATGTGAGAGGCTCAAGAGAGGGGGTTCATGTTGGCTGTCATTCTATTTGAGCTTCTATTTATTCA GATATTCAGGGTTTCGTAACAATATACACAAGCAGGCTGTAAATATGGCCAGTTTAAGCAAGCCTTTTTT TATTCGCTTCTGATTATTGTCATGACAGATATTTATTCAGCAATGCGTGAATCATAATGGTATACTCTAG CTCATGCAAGATATACCATACATATATTGAGGTGAAATGAGAAATTTTCTAATTGAAATCATCTTTTTGA AGGGAATCCTAGGTATAAGCTTACTGAACCATTCTATGAAGCTTAAAAGGAGCTCTGTAATTTTTGTAAA GTTGAATTTAAAATTTAAAAACCTATTTATCAATAGATGAACATCAGCTGAAATGAGCAATAGCCAGGGT AGCGTTTCACAAAACCAGTTCACCAACATCACATTGAAGCATGTGTGATGTTGATGAACCTGTACTTACA ATTGTTTCGTGTAACCAGGGACATGCTCCCTGGTGTAACAATGCACTGATTTCTGAACTGCATAACACCT ATTCGTACTAATATAAATCATCAAATATGAAATGTGTGTGCATTTCCAAAACCAATAAACATTGATAGAC ATCACAAATTAGAACCAGTAGCTTCTATAAAAAGTGTTCTCACTGCTTAGTGAGTTGTGTCTAATAAACA TGCTCTAGTAATCAAAATAATACATTGCTCTTAGTGCCTCATTCATTCCATTAAAAGAGCAAAATTCTTT GGCAATGAGAACAATGCTTAATTGCAAGTCAAGCCACTAGGTAGTCGGTAGTCAATGATTTGACTGATAA GAGTAGATGTCATTTATTTTCTCCCCTTTTTTGTCATTTTTTTTCCTTGTCTGTATGAGCCACATTTGAA TGTGTTTGTATGTTGGATAACATGTCATTGTATAATAAAATATTTTGATATAACAAGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds