Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT096518.1 TSA: Strongylocentrotus purpuratus WHL22.479775.3 mRNA sequence CACAGAAAATGGTGAAAGAGAAAAAGAAAAAGGACCAAGCACAGAGGAAGTGTAGCTACTGTAACATCAA GCAACCAGTGAGGACGAAACACTGTGAGGACTGCGGGAGGTGCGTTCGACGGTTCGATCACCACTGCCCG TGGCTAGAGAACTGTGTAGGGGAACGCAATCATAGATTCTTCTGGTTCTTTCTCCTCTGTCAGGCAACGC TCATCATCTGGGCTATTAGAATTACATGGGGTGGGTTCCACTGGCATCCAACCATCCAGGACTGGTTACG CTCCAACGCCCTCTATCTGATCTGCATGTTGGTGCTCAGCGTCGGGGCGGCGGCCGTCATCTCGCTTCTC TGTTGTCACACCTTTATGCTCTTCACAAACCAAACCACGTGGGAATTCATGTCGCGGCATCGTATCACGT ATCTTCGGAACCTGGACGAGTCAGTGAACCCGTTTGACGAGGGATACTGTCGCAACGTCCTCAAGTTCTT TTGCTACTGCCCGTACCGCAGTTGGGATGTCATGCTCGTGCGGTACAGCGATCTTGAGAATGCCTCGTAA GACTTGACCCTACCGATTATTTATTTTGTCCCATGCTCGTACTGTCAATTCATTTAAAGGCCCACTGCAC TACCTATAGCTACTTGCACCCTCTATACAACAAACAATGTCTAATCAGAATGATCATCTTTTTCTTATGT TATTTGAGAGCTGAGTTGATGAGATAACCACCTGTCCAGTGACCTTGCAGGGTGCTCTAATCTCTCCTGT ACAGATGAGCTTTAATATTTCTGCCAATCAACATATTATAAAGGGATATACGTGTGTAGATGAACCGTTC GATGAAGGACAGTGTCGCATTGTCATTGAGTTCTTTGGCAATTGCATATACCACAGATAGGATGTCATGC TGGTGAGGTACAATGATCTTAACAATGTGGATTATGTTTCATTTTCTCCCAGGCCCATACCGTTGATACA TCTCATACTTGCTGGTAACTTAGACATAAAGGGATGCACACATCTAGGTGTTTGTAAGAAATACATCTGG GGGGTGTTTCACAAAGATCCTAAGTTGAACTTACGTGTATCTCGAAGTTGGACTTTTATGGAAAGCCGTT AGCATCTTTGAAAATATTTTGAAAAAGTTATTTTAAAAGGCATAAAATGTTGATTCAAATCATTCATATT TTCTATTATCAAGGAGATTTCATGTTCTTGATGTGGAATTTTAAAAAGTCTAAAATACTTGAATTTTTGC TTTTGAATATATTTCATTATAAGGCTACAAATGGCGCTCCATAAAGTCCAACTTAGAGTTAAGTTGGACT TAGAATCTTTGTGAAACACCCCCCTGTTGCAGCTTTGATTCATGCAACGCTGAAATAGATTGAAGTCTGC AAGATGTCTGCTCATGATATAAAGCGAGACTAAGATTAAATAGACATTGAAGCTGGAAAATATGGGACGT ATTGCCAGTTTGAATATTTGGTTCAGTTTGTATATTGTGAAACTAGTGGTGCAGCAAGAGAACATCCAGA GAGGGCTCTTCTTACTTTGCAGTTTGCACATACATGCCTAATTACTCATGGCCCAATTACATGTACTTAA ATGTACCGAAACATGTTTGAACCTTAGAGACCCTATCCGATGAAAATACAACTTTATATCAATGGAAAGC TGAATGAATGTAGAAAACAATTATAAAGGAATAACAAGATATTTTCCCTTTCAGTGTTGCACAAAAGCAA ATTACAACCTCATTTTCAGGTCAACAGGGGTCATTCCAGTTACTGTGATGACGTAAAATATGAACCTGAT TGGCTTTCCTATATAGCCGAGGTGATGAGCCGTGCTTAATCAATGCAAAGTCATCTTGAATATGCATACT CTATATAAGATGTCATCTAGTCGATAGCCAGTTTTAATGTCGACAACTTCTGATTTTCAAAGCTTTAGAT TTCAAGTTTTCAGAGAGTTGTTTCTCCTCCGACACAGACAATAAAATAGCATAAAATTGATATTATTGTA ATTTATGGCTTATAAGCTTTCTGTTGATACATGTATGTAACTCATCTCTTTCATTTTCACTTCTGACTGG GTCTTTAATACACAATTTGTGACATACTGTACTTAGTGCAATCTCTACATTAATTGCTCTAAATCTTGGT AGGCTATCAACTTCAGATTGGTGTAATATTTCCAGCGCTTCTTATGAACCATATTGTATTGTTACTTATT CCATCGATATATTCCATACACTTTTTATGTGCTGATTATTAAATGTATATTTATGTTTCAACAAAATTCT TTTTAAGATGACATGATTTCCGTTGTGAGTAGAGAGTACATACGGTACTACAGTCAAACCTGTCTATAGC AACCACCCAAGGAAAACACAAAAAGTGGTCTTTGTAGACAGGTTCCTTTAGTACATAATTCAATGAGAAC CATTTTCAAGGGAAACAACAAATGTGGCCTTTGTAGACAGGTGGTCACTAAAGCAGGTTTGACTGTACAT TTACATGTAGTTAAATTGTAAAATGTATGAGTGTCTGTCACAGAAAGTAAAATGTTAGGATCTAGCATGT AGGCAAACTTAACTATGCTGTCTTTAAAAGAATGCGTACTTGTTTTCACCAGATGTGTCTTCAAGATTGA AATCTATTCAAGAAAATAGTGATGGGCTTGATTGTTGATTTTAACTTACTGCTGGGCCCTGTTTAAAGGG ATAGTCGAGTTCTGTTGCAGAGGGCGCTACACAAAATAATGTTTTTGTGAGATAATGAAAAACTGAGTGT CAAATTTGAAAGAACATAATATTTAAATGACAAAGTCATCTTTGTTTGAACAAATTCTGTTCAGAGACGG CTGAAATTTAACGATTTCTAATACTTGTGTACCACCACAAGTATTAGATATTTTGAAAAATTTGAAAAAA AAATGTTGAAAGTAACAAAATAACGGCTTTTATGTCGTATTTCAGCCAATGCCGATGTTGGCTATTTTGT TGGCATTTTCGTGTTGTTTATATTTCGCACAACCAGCCGGCCCATGTATTGTTATTTTTAATTAAATAAT TAATTATCGGTCACCGTTTTTTTTTTAAAGTGGAGCTGAATTGGTATGCTCGTATTGGCAAAATTTCACA CATTTTGGGGTCTAAAATTACCTTCATAGCAATTTTAGGTTCTAGAGGGTACTAGAAATGTCAAAGATAA GAATAAGATCAATAACCATGCACTTTGAAGACATTTGCGGTCTTAAAACAGAACTCAACTATCCCTTTAA TAAACCTGTTATCAATAACAAATGCTGCAAATCTGTTACAAATTAGCTCTCGGGCAATCAGATGCCACCA TTTCAGTAGCTTAAACAGTTTTTGTAACTTGTTATTGATAACAAGTCTGATGAAACAGGACCCTGATCTT TTGTCTTAAAAGAATGTCGAGGTGTTGTGGTCGAGTGGTTAAGTAATCGGACTGTCGATCACAAGGTCTG CGGTTCAAGTCCCGCTGTGGCACTAATTGATCTACATTTGCTACACTCCACCCAGGTCATGTAAGTGGGT ACCTAGCAGGAATTAATTCCATGAAATGCTAGAGCGCCTTAATGGCAGCACAGCTAAAGCTGGGGTAATA ATCTCCAAGTTTGGAAGCGCTTACAGACTTAATAGTAATTCGTGCTATATAAAAGCCGAGTATTATTATT ATTATTGTTGACATGTTAATCTGTATTTGTTATACCACTGTGTTCTATGTTGATTGTCTGGGCTCGTCCA AGCTGTTCGGTCATTCTTTGACACATATATGTTATGACATTTCATGCTTTTAGGAACATAACAAGCATTG AAAGCATTGGAATACATGTTGGTTTTACTTTAACAATTAAGCTAGTGTCTGATATAAATATTCTTTCGAC CAGATCTCTTCTTAACCTGCATAGAAACTGGGTATTTTGTATTGTGGTACACCGTTATACATGTTCACTA TAGATTAAATGTCCTAACTTTATGTTTTCTAGAATGATGATACATGTACAAAAATTATTACGCGTATTGT TAATATTCACACAATTATATTATCTGATATACAAATTTATCTATTTTCTTAATTCTAATGTGAAGGGATA GAAATGTAGGTCTTGCATACTCATTTGTATACATTTGTGCCCATCAATTGAATATATAGGACAGTGCAAT CAACGTCTTCATTAAAAATTAAAAGCTAATATTCCAGTTTCTTTTTATTAAAGCATTCTTATTTACATAT ATGTTGATTTTTCTATGCAATGCAGTCAAAGGAGCATTTTTATGTAATATATTATGCCTTGCTCTCGACG TGTGCACTAAATGTAGAGTCAAGTCAAGTTTATGAAGGTATTTGTGCATGGAAATGTAATGTGAATGTTA TTGGTATGTTCGACATGTATCTGCTTTTGTCAAATGTTGTTGTCGAAGTAAGCGTTATGGTAATCAGTCA AATTTGACTATTATTATCAAATTAAGTTTAAATGCCCTTTATAGGTTGATCTGACAAAATTTGCTATTTG CTCTTTTATTTTATCAAAAATGTAGGGTTGTAGTAAAGAGTCATGAATGGATGGTATGTTAGGGTTAAGG TTAGAGGTCAGGTTAAGAATGAGAAATAATGTAGGAACCAAGGTAGAAGCTAAGACACATTTTAATGTTA GAAATTGATCATTGAGCGATTGTTGCTGGAGCACGAGTCTTTCAATGTAGCAAAATTTAGAATAGACGCG CCGGAACTCAAATGGCATACTAGTTTGTGATATCTGTTTACTTTGTGAAAAGTTCTTTTTTTGACATGCC TGACTGGAAGTTTAGGTAACATTAAGCCTACCGTAATGAAGATAGTACAAGTATGCAGGGGTGGCGCCAG GGTATGTTGTTAGGGGAGGGGGGGGCGGGCAAGACACCCAAGTATATAGTCAGGATTTCATTTTGGGGGG TCAAGGGCTCAATATCCTAACAATGTGTGGCACTATGATTTTCAACAATTACGCATTTTGCGTTGCGGAC GCGTCTTTTCGTGCGACTACATTTTGCCAAGTGATCATAATGAGCAACTCGTTAAACTATAGTACATTAT AATGCACATATAACTGAAATATTATGTTAATACCACACAGATTGCTAAGCTAAATCAAGGTAAGCATTGA TTACCATCTACAGTGTAATAAGCTATTGTATCTTTCTGTTTTTTTGGTAGTGCAAATAGAAGTTTGAGAA TTTCATTTTTCAACATGATGCTTTAATATCTAAGTCTTCTTTTCCAGCTACGTGTACATTCCTTGTACCA TACCTGGGTTCTATTTCATAAAACTTGTTATCAAAAACAAGTTACGATACGGTAACTGTTATAAGCTACT GGAATCGTAGCATTTGATTGGCTGAGAGCAAATTTGTCATAGAAATCTAGTATTTGTTTATATTGATAAC AAGTTTTATGAAACATTGCCCTGTAACTGCTAATGCATTCCACACTTTAAGAAGCTTCATACTTCAATTT ACCTTCTATCATGTACTTGTTATAATTGTAATGTCACCCGTTCGCTTTGTTATCATGCAAAGATGAATAA AGTGCAAGATTTGAAGTCCTGGCAGGACCCAAGCTCAAGCTGGTTTTCGATCATTACTGCCCATGAAATC TGAAGTTTACTGAGCTTGAATTTCATGTACATCGAAATACTAGAAAAGCAGATTACATAATGTAGTCTAC TTTTTCCAACATGGTACAGTGCAACCTGTATATAAAGACGACCTAAGGGAGACAAGAAAAGTGGTCTTAA TAGGCAGGTGGTCTTTATGTACAGGTTCCTTTAGTACATGTTTCAATGAGAAACCATTTTCAAGAGAAGC CAAAAATGTAGACAGGTGGTCTTTCTATACGGGTGGTCACTAAAGCATGTTTGACTGTACAATTATTTCA GTAATAGCAAGGAAAATCCAATCCATCTGGAAGTAGGATAGATCTTCAGAGCTAGAGATATACTAGTTTG ATGAAGTAAAGTAGGTGCTTTAGCAAGTTCTATATTCCTGTGAATTGGGATTGTATACTTATTTATGGAA GTCGGTCGAGCCCTATTTTAAGCCTCGGTCACAAATGCCATTATGAACAATTTTCAGACAATGGAAATTC GAGAAGACAATGGAAAAACGGAGATTCGTACGAAATTATCCTTCGTACGAACCTTTGTGACTTTGTGACT GTAGCATAACATGGTTTTGTATCTTTATCATTTATTTAATTTCACAGGGTTCATTTTTTAGCACATGTAT ATAGACTTTGTGCTTTTGATATCCTTAGTTTACAATGTAGCTTGAATTTCTATGTGACCAAGACTCGTTC AGACACGATGCAGCAAAAATACGTTTTTTTAATGCCGCCATAGAAAGTAATTTGCTTCACGTTTCTGTAT CTTACAACACTGAGCTCAGTGAATTTGTGCAAGTCCTTTAGTGTGTGCAGTTGCCATTTGTTTACTTGAA GAAGAAAAAACTCGCCATGATTTTGGGGGTGGTTTCCAGCACCATATCTGAACAAGCCTTTAGTGTACAT TCTGAGCGTGTTTGTCTCCATAACACTATGCGTTACCGCAGGACCAAAACGATACCATTCATTTCACTAA GTTTTCAACATTTTATTTAGTAGATTTATGAGTATTTAACAATTACATTGTATTTCATCTTTATTGAAAG ATGTACTTGCAATTACTGGAATGAATTGTTAAATTTATTGTAGATATATCGTGCCAAGCACTTAAGAAAC AAATATATATTTTAGCACAGGCAATGGTAGACAATAAAATGACACAAGTAACATGTTTTTTTTTTCAATA GAAATGTGTATATATATTTATTGATAATTATATTTGCAATGTAAGACCACAGCTTGATTTATTAAAGTAC TAGAAACGAACACAGTAGTCATATTTAATAGTTCATCAGTCTTTTTGCCTAGTAATTAAGAAATAAATAT CCCCATCCCACCTCCACCTCCTCATTTCATTCACCCTCTTGTGTCTCTATGCACATGTACATGAATATGG ATCATATAGGTGATTTTCAACTCCAACCTCCCCCCCCCCCCCCTCCCTCTCTTTATTGATCTATTCCTTT CTTCTTTATGCACATACATAAATAGGTATCATATAGGCAATGGTTTAGATCCCCCTTCTCTTTATCTATT TCAATCTCTTCCTTTCTTCTCTATGCACATACATAAACAGGGAACATATACCGTAGTTTATTTTTAACTC CAACCCCCCCCCCCTCCCATCTCTTTCTTTCTTCTATATGCACATACATGAATAGGGATCATATAGGTAA TTTTTTAACTCCCCCCCCCCCTCCTTCTCTTTATCTTTTTCAATCTCTTCCTTTCTTCTCTACATGCATG TGGATCTTACAGATTCATTTTAACCCCCACCTCTCTATATTCCTCTTTTCTGTTTGCACATGCGCCCCCC CCCCCTCCCCTTCTCTTTATCTTTTTCAATCTCTTTCTTTCTCCTCTATGCTCATACAATTCAATTCAAT TCAAATTGCATGCATGCATGTGGATCTTATAGGTACTTTTTCAACCAACACTCTTTTCTATATAGATATA TTTTCAACATCTTTTTTTTTTCTCCATGCACACTGTACACACATTGTAGTTACATGTTCACTCGTCAAAA TATTGACCAATATAGTCCAAAGCGTGATTGGCAGTAGGATTGGCAGTAGGATTATACAGGCAGAAATTTG CTCATATGAAATTACTTCTAAAGTAATCTCAGTGAATGGCATACCTTGCACATTTCCATTGTGTCATACG GATCATGTAGAAGAAAGCTTTCTATAATATTTCCACAGAACTACATGTAATTTCTATTCAGTATCATACA AGGCATCCTCTATTAAAGATAGCGCACACAAAATACCAATGCACAGGACCCCACATTTCAAATGCTTTAT AGAGGTACAGGTATTTTTAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds