Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997351.1 PREDICTED: Strongylocentrotus purpuratus ras-related protein Rab-14 (LOC762909), mRNA CATAGACTTGCCATAGCCGCCATATTGAACGATTGGCCAATGACTGTTGTATGATGAACGCCTCTTCCTC ATAAAACGACATCTGTGTTGAACCTTTTAAATGTGATCTGTTCATTAATGAGTTGATGTAGGCGATTTAA AGGACTATTTTACCGTTGCTTAACACATCCTCCTGCCAAATAGGTCAATAATTTATCTTCAAATCGGCGA ATTGTACATCTCATCATGGCGGCGGGGCCATATAACTACTCTTATATCTTCAAGTATATCATTATAGGAG ACATGGGTGTCGGCAAGTCATGTCTCTTACACCAGTTCACAGAGAAAAAATTTATGGCAGATTGTCCTCA CACAATTGGTGTAGAGTTTGGAACAAGGATAATTGAAGTTTCCGGACAGAAAATCAAGTTACAAATATGG GATACGGCAGGACAGGAGAGATTCAGGGCGGTGACTAGGAGTTACTACAGAGGAGCTGCCGGAGCATTAA TGGTCTATGACATCACAAGACGAAGCACATACAACCATCTCAGTAGTTGGCTTACCGATGCCAGAAATCT TACCAATCCAAACACAGTAATATTTCTTATTGGCAACAAGAGTGATTTAGAGGCACAACGAGACGTCACG TACGAAGAGGCAAAGCAATTTGCAGAAGAAAATGGACTACTGTTCTTAGAAGCCAGTGCCAAGACTGGTG ACCATGTAGAAGAAGCATTCCTGGATACTGCCAAAAAGATCTACCAAAACATCCAAGATGGAAGTCTCGA TCTGAACGCCGCCGAGTCGGGAGTCCAACACAAACCCGCCGCTCCACGTAGCAATCAACTTAACACTGAC CAACAGCCTGGTAAAGAAGGCTGTGCGTGCTAACAGCGTCTCGTCATCGTAGCTTCCGCCGCCTCTTTCT TTCTTTCTCTCTTGTCCATCTGTCTATCTGTCGAGGGTGACTCTACGTCACTTATCTTCAATGCTCACAG GTCTCATTGGTTTTCAGTTTGGGAATAGAGAGGGTTTTTACAATTGAGATATAAATGATAATGAAATGAA TTATTGAAATGTCACAGACTCTCTAGGTGATACTCTCAACTCTTTATCTGCCACTTGGTGAAACCCAATA TTGCCACACTATTTGGAGTATATTGTGTGTGTGCCAAATGTTGACTATGGCAGTCCATTGTTTGTTCCAA TGTTCGGTCATAGTAGAAAAAGGGTTAAAGACAGAGATGTTATTGGCATTTTGAATACACTGACAGGTTT TATTTGTAGTTATACATGTAGACTTGGTAGGTAGATAGAAGAAGCATGAAAAGGTACATGTAAATTGTTC TTCCATATGAATTTCTGTTTTTAAATTACAACATCAAGAAAGAAACAACACTTTTTTGTAATGGTAGAAT TCTCATACCTAGTTTGAGTGATATGTCCTTTTAATTGGTACTGTAATACTGATACTACCTGGAAGATCAC TTTATTTGGGGTTTCAGCCAATGAGATGACTAATTCAGTCTGATCTACTCAATCTACTCGCTTCATGTGT GAAAGTATTTTTGCAGGGATGTAAACATTTTGTGTATGTGACACAATACTGTTTTGATTCTGGCTTTCTT CTTCTTTCTTACATTAGAAAAAAAAAAGAACGATATAGATATATATCCAAATGTCACAATGTGATTTCTT TTCCATTCAATATGTAGGATTCAATTTATATTTGTTTGATTGGGGCAATATGACCCAGATAAATACCATA GTGCATACCACATGATTTTTTTTTCTGCAATACAAAATTCATGAACCTTTTGAAATTGATTTATGCCTGG ATGACTTTTCAGCTTTTTGAAAGTGGAAAGTATTTCATTTTAGCCTGTAAGACTCGTGAGCATTGAAGAT ATTTGTGTGTTTGAATCCTCAGAATTCTGTTTCTCAAATATTATGGTATGGAAAGAGAAAAAAGACACCT CTTTTGTTGACTTCGCTCAACTCAACGCAAGACAGTCTGATCGGCATTCTGTTTGCTCTTTTTCTTTTTC ATTCAAATGCAATATGTGTACATTACTTAATCATATGATTTGTCAGAACGTGGTGACTTGTGTAGACTCC TTTGTTAGTAATCCCGTTACATGTGCAGTAACCCAAATTATCAGAGGATTTTGATTCATACGAGCACTGC AGAATGGAGTATACAGCAGTGGAGTGAACAAAAGAGGTTTAGATTTCTTTAATTTTTTTCATTTTCCGGT GGTTTAATTACGTTCTTTGATTAGATAAGTAGCATGTATAGTTGTTCAGTAAATGGTGTGATGTGCTACA TTTCTTAGCATTGTGTTATTAATATTGATGAATAGAAGGAGATTGCCCTTCGCCGGTCCACGATCGGCAC TTCATAGACTGTACATTCAGCGCAGAGCTTATTATGAGAAACCTATTGTATTGTGTAAATACTTATATAT ATTATATAAATGGTACTTGTAGCAATGAGCTGCGTCCCCATTGCTGCGATCTTATCGGTTGGGCTGCTCT TCGCAGGGGTACATTCACATTGCCAAGTATGTATTGTTGTACAGAGCATGTGTACTCTTGTGTACCTGAT GCTCTACATGCAACTCATCAGTTTACATGTGTATGCAGTGTAGCAAGGGGACTGGTCCAGCCTGACAGTG TTGCATCACAAATGCGGTGATCGTGGGAACAGCTTCAAAAGGGATGTGTAAATCATGGCTTTGCCAATCT GTAGAAAACTGTGCTGTCTTTTTGTACACTTGACTTAACAGAGAAGTAAATTACCAAACATTTTGTATGA TTAGCTTAGCGACGGATTATATATATTTCAAGATATGTTAGGTTGTGGAACAACATGTAATGAACACATT CTCAAGACATATTGCACATGACTTATATAGTTTTAATCCTGTTTATCTGTACATAGATTTTCACTAGTCC AAAGTAGAAAAGAATACACCGAAAAATTTATTTCTTAACAAAATGTTCCTACCATTTTCTCTGATATTTG ACTAATTTCGTGTGTAATTATCATTAAGGAGAGTTCACTATTACAGGCTGTTTTACTCTATCACACTTTT GAAATTCTCAGTATCTTTTCTTCTATATACTTACCTTGCCTGTCTTAAATTTTGGCTGTATAATACACGA ATATCTCATTTACTAACACTGCTTTAATATTTAATTGCATCTTTTAAAATGCAATTAATATATATGTTTA TTTGGTGATGCATGATAATACAAATGGACATTCCAAAGTTTACTTATGTCAGAAATGAATGGACACAAGT AATATAGCTGTTTATTGTACTTGATGTAGTAAGATTTGTTACAGTTATATTGTGGTTGATTTGGTTGCAC AATTTTGTGAATTGACAAACTACAGATGAATTAACATGGGGATTCCCCTTACAAAAGAATGAATGACCTT TGATCTCAAGATTTAATTCATCAAGGTAACCATGATGCTGGTATAACCCACCATTATCAGGAGCTTTATT TTGTGATCAATTTTATGACCTTCCAATTTATCAAGAAAATCTCAAATTTAGTAAATAGCTTTGACCGTTG AATGTTGGCATCCATCCATATCTGATTGTGAACATGTGAGAGAAAATAGAAGTCAAATAACTTTGCTTTT ATAAAGTAAGATGCTTTAAGAATCTGTGCACCTACAGTTTGTTGAAATTAACACCAAGTTTGAGTAGCAT CATTATGAGCATGTATCGTTTCTGCTGGCATCAAGTTGGTGTTATTAATAGCAACTCAGCTTCTCTTGTA ATTGCTTATTATACACACTCTACTTAGGAATTGCTTTGAAAAATACATTATTAAGTTCAGTGGAAAACAA GGAAACAAGATGCGGTAAACAACATTTTATATCCATTCAATGCATATTGTCAAACTTATCAGCATCTCTG CATTTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTCTCTC TCTCTCTGAATCTAACCTAGGTGGTCATGTATTTAGCTTTTCTCAAATTTTCTTAGTCTCGGTTCATCCA TGCATCCATACTGCGAACATGCTCTTTAAAAAAATTATTGCTTATATTCTGAAATCAAAACCTTACTGCA GATTTTCCTGCTCAACAAACAGATAAGGGTTATTATCTTCAATAGGTCATAGTGTAGTCTTATCATTTCC TTCATAGCTGATTACAATGTATATTCTCGTACTTGTGTTGAACCCATTGTCTGCAGCTGTCTACCGTCAT GTCTTGTGGCATTCATAAAGTGTAGTTCCAACGAATACTGCTTGAATTTTTATTGACATTCTGGTGTAAG CTGTAATTAAAAAATTAAAAAAAATTATAACATTTCAAAGATGCATCATGCAGCCTTCATCTAGGATATT CTAACTCATCTAAACCCTTCAGTATACTGACTGTTCTCTTTCATTTTCAACGAGAAAGAAAAGAGCTTAT GGCTTTGAATACACTTGTGCATTGACAAGAAATGCACATGGGTATGAATACAATTGTGCATTGAAAAGAA GCTACCAAGAAACTTAATTACCGGTATGTACGAAGGAAGGGCTACCTCATGTATCAGTAGTTAGAATTAT ATTTGATTTGTTATGACTGCAATTTTTGTTTCTTCCTTTAAGGCATCTCTTTTTCTAAATTTAGGAAAAT CTTTTGATGAAAAGTGGAGAAATTGTTGGTACCATTGCCACGATAAGTTCCATGACAACATCAAGCTTTA ACTGCTGAGAGGCACCAACATTTTTGTATGAAATATGCGAAAATTTGTGGAATGTGCTAGCAGTCTTGGT CAATAAAGAGCACATGGGTAATAAATGAGAAGTTTGGAGTTAGTTCCTTCTAGTCTTAAAGTGATCAGCG TACTGATGATTTTAGATGTATGTTGTGCTGTATGCGCTAGAGGGTACTATGTAACAAAGACATAAAGTGA AGATATATGGTGTTGAATTGTAGCATGATGATTACTTCAAATTCTACAGGGATACTCAGCATGATCCATA AGTGAGGATATACTGCTAAGGATCTTATAATATGGGATGGTTTTAATTTGTTTCACTTGTTTCAAACCAA TTAATATATGAGGTAACATTCCAATAACATTGATTACATAATTAATATAAGTCCTGTTGGAAATAGCTTG AATGTACACCCATCGAAACATCCTCATAATGTTTGTGTCCTGAAATGACTCCTGAAAGAAGGTAGTCCTC TATAAATTCACTACTTTACTCTCATCATAACTAATTTATTTGTTGTATCATTATATTATTGGTTTTCCTT CTTTATTTTCATGATATAAATCCTGTATTAGTACTCCCGATCCCTTCTGTGTTTCATACATTATTCATAT TATAAAGAAAGTAAGTAAAGGCAGTGTAATGATTTGTAGAATATATTTTGTTGACTAATATATTTGAACT GGTTTTATTGGTAATGGACAGTAAATAATTGAATATTAGGCTCCCGGTATGTACTTTGTATTTTATAGAA ACCACATTATTGAATATGATGCAAATGTGTTTGTTTAGGTAACCTTAATTGAATTTGTCTCCTTGTGGAT ATTTCTTTTTATATATGGCAGAGAATAGTGGTTGGTTTAGATGTAAAATATTGATTGGGTGTGAAAGAGT ATTTTAACATTTTCTTTATTATGCACCCGTCAGCCCAGCCGCCCCCTACCACTCCAAGTAAACATTTGTG GATTCAAAAAGTGTATAGTGAGCAATTTATGTGTGTATGAAATACATTTATTATTAAATGGTATTAAATT GATGATTCTGTGACATAATAACAAATTAAAAGATACATTGAGACGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds