Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT097602.1 TSA: Strongylocentrotus purpuratus WHL22.547533.0 mRNA sequence CTGGTATGTTGTGATACGGATGTAGATTTCTCTCATCGTACGAGTGCGAGCGCTCATTGTTTTAGCATTC TATCGTCTGCCTGAAAACAATGAATTTGTACACCGTGCACCAGACGGAAAGCCCGCTTCCTACTATTACT CAGTTGGCGTGTATGGTGAATAGCTGACTGAACGAAAGTTCGCACCGAGTTGATTTTTTTGTCTACATCT CTCGCCGCCGATTAGAGGAATTCTGGATTTAGCCGAGGAAATATGGTACTGGGACTGTGGACTTGGTGTA TTTTGACTGTGTTCAATTTTCACAGACGCTTTGCGAGTGTTCTGTTTGTAGGTTTGTCTGTCATCCTCCT GTTGCAGCTGGACCAACGTCACCACCATGCCTACGCTCTGTCATGGGGAGAGTTGTGGGCAGGGAGCGGG AGAGGAGTCGGTGGGAGGGAAGCACCGTTACATCGCCACGTACGAGAGCCAGTACCCGCGGGCATCTTTC GCTGGAGTGACTATGGACTCTGGACGACATGCACCGCTTCGTGTGGGACCGGGGTCGAAGGAAGACGACG AGTTTGCCTCGATGAAAGGAGTAATGAGGTAGCCCCTGAAAAGTGTGTCGGCTATCAAAAAGAGTATAGA CTTTGTAGAATACAGAATTGTCCTAATTCATTCGATTTAGGATACCGTGCTGCTCGTTGCGAGGAGATGG CTCCACCTGGTCATAGATGGAAGCCTTTCTACCCTTCAGAGAGAGACGGCTACAGCCCATGCATTCTCGC CTGTTACAACGAGCATAACCAAGGGGAGGTTCGTGTTGTAGAACACGGTGTGCCGTCGGGGACCCGGTGC GCCAGGTTCCGTAACGGGGTCCCCGAGACGGGGGTCTGCATCGATGGGACATGCTGGAGCGTTGGCTGTG ATGGGTACCTTAACTCTACCAAGTACCCCGACCGATGCGGCGTATGTGGCGGTGATGGCAGCTCCTGCTC GTTGGTCTTCAGTGAAATCATCTCGGAGAATCTACAAGTAGGCTACATTGATTTAATAGAAGTTCCAATT GGTGCAACAAATATAAAGATATCAGAAATTCGTAGCGTGAGAACTTACTTAGCACTGATGAATTCCGATG GAAAATATTTGATAAACGGCAACTTTAATGTGGAGACCGAGTTTACCAAGTACCTCCAGGCGGCCAACTC TGGAATACGTTACCAAAGAAGGAATATATTCAATGGATTACAATGGGAAGAGAGAGAAGTTATCACAGCC AGAGGACCACTTAATGAAACACTTCATTTACAGATCTTAATCCTTAAAGACGGTTCATCAAATACCTTAC AATATCAATATGTCATCCCCATTGAGACATCAACGCCAATACCCACCACAGAAAATTCTTCGGAGCCTCA ACAGCATTTATTAAATTCAACGACGAGTATACCAAAGCACTATGAAGCAGTAGAGTCGCTTTTAGAAACA GAAAATATAAACCCACCTATTTATCCTGTAAATATGAGTGAAATTATTCAAGGGGATCCAATGTTATCGG AGGAGAGCTCTGCAAGTTCGCCAACTCCTATCGAAGAAAACTCAGAAGTTAGTCACTTCAATAGTTCGAG TAGGACCAGAATAGACCTAATTAGTAGGAATATATCGAGTGATTTTCGGGAGGACGACATCCCCAGTGGA ACGAACACAAGAACTCAAAGGCCTCCTATACAACAATCAGTAGGAGATAGGGTGAACGAAAACGCACATA GTACTGAAAGTACGCATTACGCTAGCAGCGTACTTCCAACATACAATACACCAATGCATAATACAACACA TACGCATAATACTACGCAAATGCGTGATGATACGCATACGCTCAACACTACGCGGGCCATTGACTTCCGA GATCCACTTCGCCAGAGTTACGCGGCGCGTCCGGTGGTTAGTCCTTGGGGCGAGGGACAGGAGGGAACGA ATCCAGAGTGGCCAGAAGGATGGCCAGAGATAGCGTCTCTGGAGGGGGCTGATAGAGGCCGTATTGTCCT GGAGAGAGACGGCGTTCAGTCTGGCAAAGCTTGGTCCACGAATGATGGAGTCAGGCAAGAGGGAGACGGA CTTATTTACGGTCCACCGTATAGGACGGAGGATTCCCCTTCACATCCTTCCCCTGAGGTGATCACGAGAG ACATGGTTACCGTCGAGCTCCAGACGGAAGAACCTAGGGATGTCGACGAAGTGATCATTGACGTGATCGA CGACCAACCCATCATCAAGCAGCACCAAGGCGACAACAAGCTCGGTTTCGAATCTCAAGTCCCCGAAGAT CTCGACATGTCGGAATCTGATTACGACGACGATTTCTCGTCGTCCGACGTCGAAAACGGATTGCGATATT CAACGCGAGCGTCGTCGACGACGGGACGGCGCAGCACAACAACTGTGTCACCTACGACTTCATCAACGCC ATCTACGACCATTGCTACCACTTCTGCGGGGAAAACGGAGGTCCAGACAACCTTTGAGATGGCCACATAC CTCACTTCTGAAACTATGACTTCGAATCCAAGGACCACCACCACTGACCAAATGACCACGATAGCTGTCA CCACCGAACCACCGCCGAAATACTTCTGGAGGATTACAGCGAAGATGCCATGTAGCGCAACTTGTGGGAG AGGTATCATTAGGGACTATGCGTACTGCGTTGATGCGGAAGAAGAACAGGTGGACGATACTAAATGTGAT ACAGAAACCAAGCCTGACGTCATCGCTAAAGAGTGCGCGGGAAAACCATGCGAGCCCAGATGGGAGGCCG GGAGTTGGAGCAATTGTCTTGGGGACTGTGATGCCAGCTACCGCTTCCGTACGGTCCATTGCTGGCTCCT GATGGGCCAGGGTCTCGATTCATCGGTACCCAATGAGCGATGCAACCAAACCACCAAACCAGACATTACC GTGCCGTGTGATGAGAATGACTGCGGACCGCAGTGGATTGTTTCCGAGTGGTCTCGGTGTTCTGAGACCT GCGGACAAGGTAGAGAAACCCGTCGGGTGACGTGCTCCGATGGGAACCGATGTGACGCAACAAATCGACC CGAGTCTGAACGATCGTGTATCATTACCCCATGCGTCTGGACTACTTCATCGTGGAGCCCGTGCACAGGT ACTTGTGAAGTGCAGTCTCGTCGTGTGTTCTGCATTGCGGAGTCCACTAACAGTCGAGTGCAGGATAGCT CCTGTGCTGGTATCGAGGTGCCCCTCTCCATCCAGATCTGCGGCGGGAGCCCCTGCCCTTCGAAGTGGGT GCCTCAAACATGGGGACAGTGCCAGGGTGACTGTCAGAACTCATTCCATAGACGAGCAGTGGTGTGTCAA GGCATCAGTCGATCCGCTCAGCTCATCATCTACCCAGACTCCTCCTGTTCGCTGAACCCGCCAGTCAAGA GGTTGCGGTGTGTAATGCCTAACTGCCAGGAGCAGCGAAGAAGCGCCGCCGATTGGATGTCGTCAGCCTG GAAACCGTGTTCTGTTACATGCGGTAAAGGGATGCAGACTCGCGAGGTGCGCTGTCTAATCGGTGGACGG CTCAGTGATCACTGTGATGCAAGCTCGAGGCCGACGTCTAACCGGGAATGTTTCAAACCGGCATGCAACA CTGTCCCCGGAAATACAGCCCGGGAAAACTGCCAAGACAGTAAGAGCGCAGACTGTGACCTTATTGTTCA GGCGAATCTCTGTCGGTTTGCCCGATATAGCAAGACGTGCTGCAGGTCGTGCCGGAACGTCGCCGGACGA TCAGGGTCTCGAAGTCAAAAGTGACCCAGACACTGACATCATCATCGTGATCATTGACGGTTTCGTCGGA CTTTTTTCGATGTTGTCGACTGGCAGCCAACCTTGATCGATGAAAAGGAATCGAAGGTTGATGACCGTCG TGAACTTGTTGGATATTAATTATATAAAGTGAATTCGTGGTCGAATCGCTTGACGCTTGTGACGATCTCG CCCAAGAGAGACGGAACCACTGAATAGAAAGAATTGCAGCTAAGACATCTTACCAAACTCTACTTGTATG TTACCACATAATACATGTAGGCTACCTTGGCATTATAAACATTACGACGAACAAAAATTTGCAGTATTTC TTGCCATTTTTATACCCCTTACTGAAACGTAATTGTTCCTGTGAATGTCGATATAGTCAACAATTTTGTA TAGTTCTACGAAGTTAGATAGAAGAAAATAGGAATCAGACCACCCAAAACCCTCTCCGTCATCATGCACC TGTTTATTTAAAAATTCGTTTTAAAAAAAGTTCTTCTTCTGAAGTTAGCGTCCCTATCATTCACCGATTC GCCAGAAACTCATCAAGTCTATTAATTCTTCAAGTTGTGCATCGATTTTATTCACCGGTTTGTGAATATG TGTATGACACTTCAGACGCTATTGGAGGTCTGACTCAAACGAGGGGAAATTACCGAATAGAAAGAAATTC AGCTAGGACATCTTTATCATTTTGAAAATCGCAAATAACGAAACGAGTATTTCTTGCCATACTCTCTTGC CATTTCCTTACTGAGATGTCATTATACTTTGAAACTTTTTTTAAAAGTAGGCTATGTCATGTCGTAGTGA GAATCTGGATCACAAGTTTGTTTCAATAAAATTGCACGCTAAATTCAACAATGCTAATTTGTAATTACAT TCCCAATCTGTTTAAATTGTATTTGTCTCCAATATGCGCAGTGATATTGTTAAGTTTCCATCTCGTTAGG ATCGCATCAGGTTTTTATTTTATTTTTACATTTAGTTCGCCTCTTCGTCATCCAACATTTCGTCTGATAA AGTTGTCTCAAATTAATGTACACCATATAATTTACAATTCCGTCATAGTGTGATGAACATCTCTGATTTA TTTTCATAGATTAAGTCCAATCTGATGTCCTATGATGACATTTTTGACAAATCATGTAGAGCAATGATCG GCAAAATCATCCATGAGATCGCAGAATGAGTTCGTCATTGAAGTTTCTCTAATTACGTGTGGCAGAAGTG TGCCTAATTTCTGTCCGTGTCAACTTCTTCCTCTCATCAGTATCCAATGCCAGTATTTGAAATTAGTTTA CTCACTGTATCTGAAAAGATTGGGTTTAGGATTCTGTTGCATGATAATTCCTTATTCTTTGTCACCATTT GCAATTTATTTGAACAAACATAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds