Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998186.1 PREDICTED: Strongylocentrotus purpuratus coiled-coil domain-containing protein 180-like (LOC105437276), transcript variant X3, mRNA TTAAATTACTTAGACGTTACCAAGCAACATCATCGCTCTCGATCAAGAAATCTTTTTAAAAAGATAGGAA TTACACATTATACGTGCACATACTGATTAAAATCATGATATGATCGAATTCTGAGGTGACAAGAGCTAGA GCTTGAAATTAAAATGATGGCAGAAACGAAAGCTGTACGGGTAGTACCCTCTGGACATATCTACAAACAG ATATTTGATGCTCAAGTACAATTGGTAAAGACTTTGGAGCAGAATGAACACCCTCGTCAGCAGTCTGAGC CTAAGACCTCATCTATTCCCCTGGTTCATGAGAACCGTGCAGAGATGGGCAAGAGTCTGCTGCCCTCTAG AGATATTGATTGGATAGAGAGTTTGCCGAACAACCAGCTAACAGAAAACCCGGTCCTTTACAGGCATTCT GTTGAGACTGCTGATAGGAAAGCTACGGAACCTAGATCGGTCATCGCGGCTAGGGAAGTCAGAGGACTCG CTGATACTATCGAAGCAGAGAAACTTGGATCAGATATCATAGAGAGACTAGCTGAGAGCAGGAGAGTAAG ACACGATGAAGCTACCGAAGATCTGCATCATGAATTCACAATCATTTCAAATGATATTGAGCCCAAAATA GCAGCTGGTGGTGAATTTTTGATCAAGAAACTTGAAGATAATGATAAAGAAATTGACAAGATGCTTGCAC TGATAGCTGATGATGATGATTTGAAAGGTTATGCTCTCTCAGAGTTAGTGAGTCTTTGGGCTCAGGTAGA AGAGCAGGCATGGATCCGTAGAGAGTACATTGATGAAATGGACATCGCATTAAATGTCCTGGAGGATGAC AGGCTGGCTAAGCTGAAAGATATCCTCAAGACGTATGCTAAGAAGATGGAGGACATAGCTTACTTGATGC CTCCTGACGTCCAGCGCCTCATTGAGAAGGAATCAACCGTTATCAATCAAACACTGCTCACAAACAGAAG AGCTTACACAGATCTTCACGCTAGGTTAATGAAGACTGATATTGAACGGGATAAGAATCACAGAGGCATC TGGGAAGACAGGCTAGCGGACTGGCGTAAACTGAACATTGAGATTGCCGTTAAGAAGTTCATGGACTTCA TGCAGAGTGAATGTATTGTGAATCCGTCAAAGGTCAACGCACTACTGGAAAAAATGCACCATGAGCAAGT TCAACTAAACATTGAAAGACTCCAGATCCTAACAAAACTCAATGAGATGAAGCCTCCCAAATCGACCAAG ACAGCAGCGTATCAATGGAACAAGGAGATTGTGAACTCTTGCCAGCGTATTGAACAGCTTCATGTAGCCT ACCTAGATGAGTTACATACAGAGTATGAACAGGTCTGCAAGGAATGCCTGGACATGGTGGAAAACTTTCA GACCGAACTACTGGATGCTGGAGTCTGTACAGAGCTAAAGGTCGTGGAGGTCACAGAGGAAAGGATTCTG CCAGAGGTTGGTCTGCGCCAGGTCTCGTTTGAGAAGGCTCTGGAAGACATGGATCTCTCTCTTGAGAGGT TAGCAGAGCATCACGCCCAGGAGCTACGATCACTCTTCAAATTCACCCAGGGTGCAGCTCACCTCTGGGA CGTCCATGAGATCAACCTGGCTAAGAAAGAGCGCCACCTTCAGGAACAACTGGAAGAGTGTCGGAGAAAA CATGACAATCTCAACCAGGACATGGAGGCTAACCTAGACATCTTGATGGACAGACTGAGACAGGAAAGCA GTGAGGAAGCTCTCAAAACAACCATGGACAAAGCTCATCAAATGCTCCACAAGATTCAAGAAAGCTATCT GCATTTCTATCAGGACCAGGAACTGATCGTCCAGGACTATCCTGGTATGGTACAGGAGGAGCTCCAGCGC TATGACGGCTCTCTGTGTATCTTCTTTGAGGTTGATCGGGTGGACCCACAGGAGAAACAGGGAAAAAGGA AGAGCAGCATAAAGAGCCAATCTCAGGATTCACCTAGATCATCTAGGGCAGGTAGTCAGGCCGGTAGTCA GGCTGATAGTCAGGCCGGTAGTCAGGCCGGCAGCAAAGCAGCTAGCCAGGCCGGCAGCAATACAGATAGC AAAGCAGGTAGTCAACCACAGGACCCCCAGTCTACCAAGTCGGAGTCTTCTGCCACCAGTGAGGAACCTC CCGTTGTCACTGAGGTGCTCCTAACAACAAACGGGACAAACTTCTACGTCTTAACGGTTGCCGGGGAGCA TGGGATCGTATCAGATGGGGACCGGAATGAAGATGGGACGGAGACGGTGTCTGGGGAGGATCAACCAGCC TATCTAGCAAATGTTACCATCCCGCAAGAAACATTGAAGAGCATAAGAGAAATAATGAGGATGTCCTTTC TGGAGCATCTAGAGGAGTGGATGATCTATGCAGTACAGAGAGCACACAGTGTAGTAGCTGCTAAGACCGA GGAGCTAAAGAGTGAGTTGGATCTGAGACTGCACCTTCATGAGCCTCGTTCACATCGCACTGAGCTTGAC ATCCATAACGTACGTGCCGCTGAGCTTCTACTTCATCAGGAGCGGGTCACCAAGCATTCTAAGGGTGTCT CCTGTGCTCTATCAGAGGTCAAGCAAAGATTCTCTGCTATGCAGAAGGAACATGATGGTGTGGTGGAGAG GTTCAAGCAGGAGATTGATACTATGGAGAATGTGTTTGTGCATGCTTCAAGATCAGCTGACTTGGTGTCC TTATCTCACCAAGTGAACACCAAGGTAGAGAGTCACATGGATGTGATCAGAGCATCCCTAAGACAGTTCA GGACATACCTGGATGATACTCTACAGATGCTCAGAGAATCTAATGCTAGGTTCATCAAGTCTTTCAAATT GTTTTCTGGTGGTGGTAATTTTTCCCCGGAGGAGGTAGAAGCATACAAGAAGAAGTTAGAGAAGTTAGCG ACTAAGATTGATTCAGCTGAAGGCTTTGTGATGGCTGACTTAGAGGGTATGGAGGCAAGGAGATTAACGC AAGCTACTGATATAGCTGGCAAGTTTGAAGACAGGTTCAAGAGTCACCTGTTTGATCTGACCTTCATTGA GAAGCTGAGTAGATGGCTCAACAACACACAGGTCAAGATCAAAGGGGAGGTCGCAGAGAGTAATACACAG GCTCAGACACTCATGAGAGTGCTTAACAAACTAGAAACTAGAGTGGATGCATGTGAGAGACCCAATCAAG ACAAAGAGCAAATAACTCCTGGTGAGTTACTTGAGACGCTACCATCTATCTTCCAAGCGTTTGATGAGAG AGCACAGTACCTGAACTGTGCTATACACCTGCTCTTAAACGCCCCTCCACTTCATCCTGCTCCATTGTCT AGAGGCAATCAAAACACAACTGCAAAGGTTGGCTTTAGTGGTGAGCAGCAGCAGGGCCCAGGAAGCCATC ATCCATCTGGTACAGCCGTAGCCCTGACTCCTATCACGTCTACGACTACAGCAGCTCTTAAAGCAGCTAA ACTACAGTCGGAAGATGCTGCCGTCTTGGTCATCAAGAATATCCTGACATCGCAGAAGAACAAGATGAAA GGCCAGGATGAGGAGACACCATTGACCACTCCATCTGTATCAAGACCATTAGCATCCCAGCCCACCTCTA CTGCCGGTGACGCCCATGGTAAAGGCGTGGCTAGACCCCCTGCTAAGCCTGTGGATAAGGATAGGTCAAA GGTCAACAATCCAAAACGCACCACCTCGATGACCTCAGATCATAACCCTAGAAGGAGCGCTTCCGGAACT CAAAAGAACAAGAATAATGGTCTCAAGTTTGATCCCAAGTATTACATCTTTGGAGAAAAGCCAGAAAAAG AAACTCACTTGTTAGCTGTTGTGAAGAGGACTTTACAAGATGCACTGGATGGCCTACTTACTACTGCTGA TCTGTACTACCGACAGAAAGGCAGTCGTGCTGTGACCCGACCTCAAGCCATCCATGAGATCTTTGAGCAG TGCGCCGATGTGATTGTCACTAAACTACAGTCTTACTACAAGCAGGCTGATGATTATCATAACCAATGCT TACAAGAATTCCGTGAACAGCTGGAGAGGCTTGAGATTGAGGTAGCCAAGGTCCCATCACTGGTTATCAA ACAGCTTCTCAAACATCACATTCAGAAAGCTAGTGGATTGATGAAGCAAGGTGGTGGACAGTTCACACAG AAACTAGGACAGTGGGAGAAAGCAAGGAGCCAGCATAAACTTTTGCTGCGCCCGACCCTAGGCCACCCTC ACAATCGCAATGAGCTTGTATCACTGTGTGATCAGGAGGAGGAGAGAAGGAAGGAATACATGGCTGGAGT AGAGGACAATGCTAAGGCCCTCAGGGATGCAATGAAGAGCTGTGGAGATGACTTTGTGAAACAGCTTGCT ACTACCACTGAACAGCTTCTACTCCTACTAGATTCAGAGCTAACAGTTGATGATGTCATCACCGGCAGGG TTGATGCAAAGCGTATGAAGACCAGCGCCCTGATGCGACGCAAACAAGCAGGGCTCCCACTAGAGGACAA TGAATATGTACCACTCATCAAGCGAGGTAGTCGTCAATGGGAGGGGCTTCCCCTTAGCATTCAACCAGAG CCGACGCCCCCTCCTAAGATAGAAACATCGCAGACTCCAACTCAGGCACGTAGCCGTAGCAGACTGGCGA AGGGTAAGAAGGTTGAGAGTGAAGTAGCTCCTACTCCGACTACAACAGCAGCTGTGACGACTCAGAAGAC TGCATTAGCACACCAGGCAACCTATGATGCAAGGAATCATGCATTCCAGCAAAGCACAACGGACTATGAG CAGCGCTTGAAGGAGATCGCCACCAAGCAGGAAGAGCAGACCACGGCGGAAAACAGGTGGACCGGTAGCT GGCAGACAGCCGTCCAGAAAGTCAAAGATCTCTACTGAAACAATTCAATGACTTCACCTTGAGCATGAAC AGAGAATCACTGGGAGAACTATGGAACATTGTATGGAGCAGCCCAGTGACATATTAAACAAACATATCCC TACAGAATATATTATATTCTTGCAATTGTGTTTAAAGCCTATCTGCACTAGTTGGCCAGGAGGGATTAGA CCTCACTGCATGGTCACTGGCAGGTGGTTATCTCATCAAATCAGCTCTCAATTTAAAAAAAAGCGGACCA TTGGTCACCGATTAGGCATTGTTTGCTATACAGAGAGTATAAGTAGTGTAGTGGAGCTTTAAGAAAGTGT TTCCGTGATCACTTTCCAGCTTCATCCATTTATTGAGTCAATGAAAGACTTTCATCTGCACTCTTCCAGT CTATAATTATGTAAACTGTGTTGATGATGTCGGCAAATTCCTACCTTTCTTATTGTCATTACACCACAGG ACTCACAAACAATGTGATCGTGTCGGGGACGCTTCGCAATACAACACCTCTAATCTGACATTCAAGCTTA GCTCTGATTATTTGGAGTTTTAGTTGGTTTTGATTTTTGGAGTTGTGTTTATTCACCCCTTTTTATACAA GAAACCCCACTTGCAATATATCAAAAAGTACATGTTATATCTATAAGACATAAGCGTATTGGGTTTAAAA AAAGTTACAACAGGAACAGAATATTCATATATTTTATTTCATACATGACAATTCACGTTTCTCAAGTTGA ATATAAGGCTTGAGAAAATGAGGAATAATAATAATAATAATAATAGCCTAATAATCCACTCCAAATTTTA TTAAACCGAAACGGATATTCCTTTTGCCCAATTGATCGTAAGCCCGGCAGCAATAAGTATCAGAATGGGC AAACATACAATATTAAAATAGGTGACGCACTATAAAATTATGATTGTAGATGATAAATTGCATCATCAAC TTCCTTTGTATAGAGTATGTGTTGTGTGATGACATGAAGCATTATACCGAAGAACTTGATCTCTATCGAG TCACAATGAAACCACCTTGCTCTCTGTATATACTGTATATCTAATATTGTATTTTGATAAGCTGTCCATA GATGAAATTATATAAGATGTACATATGTATATACTTGCAAATTCTTTCTATTTAAAAATGTTTTGTCTAT TTTATTGTTGGATGCAAGTTCATTGCAACACTGCAAACATATTCTTGATCATTTGCCAGACATCTTCTAC TTTATATCCGTCCATTGTTAGATATTGCAGTGTGTGAATACATTACCTTAAAGCTTTATTCCTGTTCAAT AGTGCCTGAATTATCTACATTCATGATTTATTATTTTGATAATTTTGCACTTCTCTCTCTCTGTACTGGA TTCATTTGAAGTTGTATCTTTATGTTTTGGCTATGACATAGTCTTTGGATATTATCAATGGTCATACACC TTTCATTGGCAGTGCAGTGAGAGACTGAGTGCTTTATTCAATCTAAGAAGTTTCTTGATCATACTAACTG TATATACACATTGCTGGCCAGGATAGATATACATGTATATGTATAATGTAGAATAAAAACTATTATTGTC AATAAACTATCCTAAAACCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds