Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998123.1 PREDICTED: Strongylocentrotus purpuratus bromodomain-containing protein 3 (LOC100892105), transcript variant X2, mRNA TTATCTGGAGTCTGTATCATGCCAAAATCGGTCTAAAACATTTGAAAATTTGACAATGGTGATTTGCACA ATGGAAATGCCGCGTAGGTTACTCGAGTGGGATGTGTAACGCCAACGAGATAACAGAAAAAGTGCAGAAC TGGCGACTTTGTGACGCAGGTTTCCACCTGCAATCAACAGGTTACTGTGGTCTCAGTAAACGGACTGTAA ATGTACAGCAAGGAAGCAAAACTTTCTTTAATGAAAACAGAAATGAACGACATGGCCTCAGCTACAGGTC AAACTCAAAGTAGGCAGCCTGGGAGGCAGACAAACCAATTGCAATATCTTCAAAAAGTGGTGATGAAGGC ACTATGGAAACATCAATTTGCCTGGCCATTTCATCATCCTGTCGACCCAACCAAGCTTGCTCTACCGGAT TACTTCAAAATCATCAAGACTCCAATGGACCTTGGTACAATCAAGAAGCGATTGGAGAGTATCTACTATC ACAGTGCAAAAGAATGCATCTCAGATTTCAACCTCATGTTTACAAATTGCTATGTATATAATAAACCTGG AGAGGATGTTGTTCTTATGGCACAAGCCCTGGAGAAGCTCTTCCTGACAAAGGTTGCACAAATGCCACAG GAGGAAATTGAGCTGGCTCCCCCAGTGAAGCCAGGGATGGGAGACGACATATCAGGGCCAGGCAGGAAAG GAAGAAAAGGCAGAGTACCAGGAAGGGGGATAAGTGCAAACTCAAGGTTAGGTATTCAAAATGCCTCACC TCAACCATCGGTACCCAATGCAGCGACGACACAGCTCCCAGGTCCGCCAGCGAAGAATGCGTATGTTGCT CCCCTTGCCATGAAGTCACCTACAGCAACACAACCATCAACAGAACTTCCTGTGCTACCCCCAGGAGCAG CGAGTACACAGGCCACGGCTGCAGCCATGTCAACCTCACCGCTGGTTTCATCCCCGCCTCCTATATCAAC TCCAGTGGAACCAGTAAAGCAGAACTCTCTTCCAGGACCTCCGAAAGTAAGGTCGCCTGCCAAGACAAAA GGAGCAAGGGGAGTAAAGAGGAAAGCAGACACAACCACACCCACAACAGTAATAGAACCTCCTGAACCCA TAGTGGCTCCAAGTGCCGACTACCACTTAGCCCAGGCCAAGCCAGCTAAGATCCCGGGCAGGAGAGAGAG CAGTAGGAGAAACATCAAACCTCCCAACAGGGAACTCCCTGAATCAGATCAGCACCAGAAGGGAAAGAAG GGCAAACTCACAGCTCAGCTCAAGTACTGTTATGGTGTCATCAAAGAACTCATGTCAAAAAAGCACTCGG CATATGCATGGCCTTTCTTCAAGCCAGTTGATGCAGATGTACTAGGACTGCATGACTATCATGAGATCAT CAAGACTCCAATGGACATGGGTACAGTAAAGGTAAAGCTCGAAAACAGGGATTACAAGAACGCCAATGAT TTTGCTGCAAACGTCAGGCTGATATTCACAAATTGCTACAAGTACAATCCGCCGGACCATGATGTTGTAG GAATGGCTAGAAAGTTGCAAAATGTGTTTGAAGTCAAGTTTGCCAAAATGCCTGATGAACCATTGGACCC ATCTGACCTAGAAAGTGACGATGAAAGCAAGGATGAAACCAAGGCAATGGATAGTCCGTCTGATGCTTCA GCTTCCAATAGTAGCTCAGAATCAGAAGACAGCGAAGAAGAGAGGGAAAAAAGGTTGTCAGAGTTACAAG AGCAGCTCAAGGCGGTACATGAACAGCTTGCAGCATTGTCATCACAAGCACATCGGAAAAAGAAGAAAAA GGACAAAGACAAAACTAAAAAGAAAGAACGAAAGGATATTGAAAAAGAGAAAGAAGAACTTGAAAAGGCC AAAGAACTTGAAAGGCAAAGAGAAAAGGAAATGGAAGAGATGAGGGAAAAAGAAAGGAAACTTTTAGAAG AGAAAGCTAGAGATGAGGAGAGGTCAAAATCAGCATCGAAAAGACCAAGGAAGCCTGCAAAGAGCACAGA GGACAAGGCCAAACCCAAGAAAACAAATAGACCGAGGAAGAATGCAAAGACCGCAGAAGAGAAGCCTAAA CCCAAGAGAACAAATAGTAGAAGAGGAGGTGGAAGGAAAAAGAAGGTTCCAACGACGGGGCAACTAGAGA GTGATGATGAGGACACAGCAAAGCCAATGTCATATGATGAGAAGCGGCAGCTCAGTCTGGACATCAATAA GTTACCTGGGGACAAACTTGGCAAAGTTGTACATATAATACAGTCAAGGGAGCCCTCACTCAAGGACTCT ACACCAGATGAAATCGAGATTGACTTTGAGACCCTCAAACCGTCCACCCTGAGGGAACTGGAAAAATATG TCATGCAATGCCTCAGGAAAAGACCAAAAGCATACAACAAAGGCCAGACGAAGTCTAAGCAGGATGCACA GAAGGAGAAGCAGAAAGAACTGGAGGATCGACTGAAGGAACTTGGCGGGCCATTTCCCAAGAAGGCCACA AAGAAAGCTCAACAAGATGCTTTGATGAATGAGGGGGGCAGAACCGAGCGCCCACTCAGTGCCAGCAGTA GTAGTGACTCTGAGAGTGATGCAAGCAGCAGCACAAGTGCTAGCTCCAGCTCCGACAATAGCGAATCGGA GTCAGGTACTCCAAAAAAGATGAAGAAAGGAATAAAGGTACCTCCTCTTCCTGCAAATCGACAAGAAATG CAGAGAAGACTATCCGGTCCTGGACAGGCTCCAATCACTACACCAGCCGGCTTCCATCCAGAAACCCAAC AGCAGCAACCCATGAGTACAGGACCAGGTCCTAGTCCATTCTCACTGGGTCCACAGGCCACTGGTCACCC CTCTGGGCATCCCTCGGGTCAACCTGTTCAACATCCAGGACAACCTTCACCAAGACTGACCAATGGACAA AACCATATACCAGCACCAAGACACAGTAGCTTGCCAGCCTTACCAGACCGACCAAGCAACAAAGCAGCTC CACTTCAGAAGAGAAGTCAAAGGAAAGTTCTGACATCGCCACTCACGTCTCCGGGTCCACTCACATCACC AGCTAATACACGGGGCAGTACTACTACTGCTTTCCCTTTGCCATCACCAACTCTTCCACAAACCAAGCCA GCAGTGGTTGCCCCTCCTCAATTACAGCCACCTGCTGTTTCCAAAGCCCCACCAGCAACCCCTCCTGCAA TGGCTCCTTCAGCACCAGTGGCACCTCAACCTGCACCAGTAGCTATCCCTAAACCCAAACCAGAACCAGT GGTGAAGCCATCCAAACCTGCTCCTAGTCAAACACCACCTGCAGCTGTACCCCCTCCATCATCAACCAAA CCCTTGCCACAACACCCACCACCGCAGCAACACCCTTCACGCCACTCCCCGCAACCACTACCACAACAAC AAGCAACGTCTAAGCCTCAATCCAAGCCACCACCTCCAACCGATATCCCCAAACCCCAGCCTCCTGCTGC TCAGAGACCAATACCAGCAGACACCAAGAAGACAGCACCACCTCGCTCGGTGACACCACCGTCTCCGCCA CCACAGGTCAAACCAGAGGTCCCGTCTCTCATCCAGCAACCAACCCTCATCCCCAAGGTGGAGGATAACC CAATGTCATTCATGGTTGGTGATGAGGATTTAGAAGGGGAAGGGGAATCACCTTCTACTAGTCCTGTCAT GACTGGTCACAAGACAGAAGAGAGCAATGGTTCATCACACCCTGAGGGTGGTATGCCTTCCAGTGCTAGC TCTGAGAATCTATCTAAGATGGAACAGAAAGCTAGCTCTAAAGATAAGAAGGACATGAAGCTACCAAACC GTTATTCATGGTCTAACCTAGCCAACACACCGTCTTCAACCAAGCCTTCCAGTAAACCTACCAAGACCTC TCATCACAGCTTTGAACTCTTCAAGAAAGCAGCCAAGGAAAAAGAAGAGAGGACCCGTCAGATCAAACAG CAAGAGGAGATGAGAAAACAACAGAAACACCTTCAGGAACAGGAAAGAGCAAGGCAGGAAAGAGAAAGAC AAAGGGAGAAGGAAGAGGACGATGCACTGGAGAGGGCTAGAAACTCCCAACAAGAAGAGGCCAAGAGAAC GCAGTCTATGAAGGAAAGAGAGAGGCTACGGGAACAAGAGAGAAGGAAAAGAGAAGCTATGGCTAATCAC ATAGATATGAATCAACAGAGCAACATCATGGCAACATTTGAAGAAACGTTGTAGCAGCATCACTTGTGAC TAAAGAGCAACATTGTGGCAACATTTGGAGAAATGTAGAAGTATCACTCGTGTCTCCAGAGCAGCATCTT GGCAACATTTGAAGAAACATTGTAGCAGCATCACTTGTGACTAAAGAGCAACATTGTGGCAACATTTGGA GAAACGTAGAAGTATCACTCGTGTCTCCAGAGCAACATAGTGGCAACATTTTTAGAAACGCTGTAGCAGT ATCACTTGTGACTGACACGAGAGCAACATTTGAAGAAAAATGTAGCAACATCTTAGCACAACTTGTGACA TGAGAGCAACATCATGGCAATGTTTGAAGAAACATTGAAGCAACATCTGAGCACAACTGGTGACTTGAGA CCAACATCACTCGTGACATGAAAGCAGCGTCATGGCATCGATTGAAGAAACTATGTAGCAGCATCTTGGC ACAGCTTGTGACTTGAGAGCAATCTTTTTGAGACCAGCAACTCTGTTCAAACTTTCAAATACATCAGATC TCTGTAGCCCAGCTGGACCATGCTATGGGGTTAAGATGCAGCGGTGTTGTTGCAATGAAGTCTGAACATT ATCATAAATTGCTGCACATCATACATTCGCAATCAGTAGATAATACTTGTTCGTTGTTTGTTTAGCTGGT ATGTATTTAGACTGTCGTGTACATCAGGAGTGCTGACACCAGCATTATTTGTTGCATCACTTGGTATGAA TTGAGTTCCTTTTTATTTGTGTATATTGTATTTGGTGTAGAAGATAAGGATTTTAGTGGAGATACCATGA CATAGAGGATGTATGTGTTTACATGATGTCATTATCAGCAGCAGCCAAGAAGTTTAACAATCACTCAAAC TGTGATCGGATAGCTATGGGAGTACAGCCCCATGTTGAAATTCCATTTTTGTGAGTCCAGTTTAAGAATT TAAAAGACCAGAAAAAAGAGGATATAACACCTACCATTAAAGAGATCTGTTTTTTAAAACAAGGCAACGT AAAGCAGAGAAAATGGAATTGTTTTAAAGAATTTGACTACTTATTGCAATGATATTCTGTCTAGCCATGC TACAGGTCTGATTCATTATGCAGGAACAACAACATTTTTTATCTGACAAACGACAGCAAATAGCAAGTGT TTTATACCCACTGAGCTAGTGCCAAATGGGTTCTTTTTTTATGATGCTTGTCCGTAACACCACTTGAATA CTAACTTATGAATCTGTTTAAAATCGACCCACATGTTATAGAACCACACATCATCAAGGTTTACTGGCTC TCTGACCACTGGTCTTGACAAACCTCATCATCATCATCATCCTCTTTCAAAAAGTATTGCTTCTCTTTTA AAAGGTTGCAAAATATTAGTTTAGTGGCCATGGACCAACCCATACGGATCTGACGCATAATTGTTGATAA CAGATGAACTTTACTAAAATCATGTTTGTAATATTGTCTTGATTTGTCTGTGTGTATTAATGTTCAGGAG GTATATGTATATGTGTAATAGATAAGATGCGAGGTTGAAGGGTAGTCATATGCTCTTGAACCATTGATAG CCTAGCGATGATTCACAGAAGATAGAGAGAGATAGAAGAAAGAAACTTGGTGCCTCTAGATGTTATACCC TGAATAGCCATGTATGTATCAGCTTGATAGTGATTAGATGTCTTGTATAGACAGTGGAATATTTTATTAA GATGAGTCGCCAGGGAGTAAAATATTTGTTTGATATTTATAGTGTTGTGTGGAACGGGTGGAAGAATATG GCTGTAATGCCTCGAGAATTGTACAGAATTTTGTTATAAACTTCCAAATTGTGTTTCCACTTTCCGTGTT ATAAATATATATAATATATAACAGTTTCTTGTCGACAGAGAAACTTGTGTATATACTTCTAAAGAATTTT GAAAATTGTTGTACTGAATTGATTTTTTTTTTAGTAGCTTTTGCACAGATTATTTGTGTTTTCATTTCAT TATTCTCTTGAAGGTGTAACTTTGATTTGTTAAAGAGAGGATTAAATCGGCTACTCTTATGTACTTGTAA TATAGATATGCCATTTGTTGCTACCAATTGTTAAAAAACTCTTTGTACATGAATTTCTTTTGGGTTTTTG GAGTAATTGCAATTTTTTTCATGAGCTCAAGAATATTCTCCTGGAGAAAAGATGTTTTTGTTCTCATAGT ATAATGCTATTGTTTTTGTGTCTAACTTCTCTATCTTATTTAATCTGTCTTAATTTGAAAAACAGAGAGT TTTCAAAGTTATAATTCTAATCATATGTGGCAAAGGGAAATTGATTTTTTGCTATTGATACACAAACTCT CGTAAAAACTAATGACATACGCCTGTATAATCTATGCAATGCATCCGTATCCATGTTCCCCCTTAGAAGG TTTTGAAACCAGAAATGTGTCCTTCTAAATATGATCATCTTACAGTCTATTAGAAGGTTCACACATGTCT GGCTTTCAATTACTGGTAAGCTTTTACCCTCTTAGATATACTTTGTCATACGCACCTTGTAATACCTGTG CAAGATTGATATATGTATATATGACTTTTCATTGCATACATGTAGTCTTTGCATTTTGAATGAGATGTGG CAAACATTTTGAACAGTACAACCGCTTAGTAGTATTGTCTTGTTCCTCACATAGATTTTAATCATGAAAA GAGCCTTAGTCATATTTCTGCCAGTCGGCTTGAAAGGACGAGAAGTAGCGTTGATCCGTAGGAACAGAAA TGTAGGAATTAGATCGCGAGAGACCAATTATTTCATGCTTGTTTTCTCTTATTTTTAATGATGTTGAAAA TATTGGGAAAAGTTTGTATTCTTAGTGTTGATATCAACCATACCCCAAGAAAACTGTGTGTGTATTTAAA AGATATTTGTGTGGCATAACTACCTTGCTGTAATGTGCTTATGTATTTATGATAGCTCTTGTAGTGTATG CTGTCCAATAACATGTTTAAAGAGTTCGCAAGAGTAGCATGTTTTTAAAACATTGTAAACATTGTTTTTC CAATCTAGTATTATAACTTCAATAACATTTTTTTGCTTCTCATAAGATAACATCAGCATTTCTTCTTATC CATTTTTGCAATCAATTAGTCAATGTAGTCTTTCTTGAAACACCATTATTTCAATTATTTGGGTTTATCA GATGCAAACATTGAAGATATTACTTTAGAAAAAAGTCAGCTATTGATAAATGATTATGTATTATATTAAT GGTTTGGACATTATAATCTGAATTGTTTTTGTGTATATACTTTACAAATTGTATATACAAATAGAGTGTA CATAATTACTTAGTCAGCTTTATGTGACAGTAATTACGTACAACAGATCTACAAAATGTATTTAACAACA AAATGGCAAGTTTTATAGGCTTTTTCAAATCCTTTGTGTCTCTTTGTAATTGATATTTTTTTCTCGATTC AAATTTTTGTTGTTCTGATGTTGGACCAATGTTGAAAGGTTACACACTTGAAATCAGCAAGTTTTATAGA TATCACTCATTAAAAAACCATCAAGGAATTTACTTTTATTTCATATAACCCCCAAACCATGCCTGATGTT AAACCAGTGCATTTTTTTTTTTTTTTCAGTCACTAGCTTGCATTATTACACTGTACTAAGCCTATCGGTA TGAAATGGATTCAACATAGATTCAAAGTCCTTAAGTATCAGTTTGCTCATCCCTTTATACACATAATCCA GTCTTGTTTTCAATTGTAGCATGGATGACAGTATAGCAAGCTGACATGTGTAATTGTGTATCAATGAACA AATAGTCCACTAAATCATACTGGACAACTGTTCTTGACAAATTTATAATTTGTTCCAATCTTATGTTGTA TTGTATGCCTGTTTGTTCCCAGCTCTGCTTTTCTGTAAACAGAATTATTTGTAGTAGTTTCGACGACATT AAGGACTACCAAGTATTCTCTGAGTAGCGTTGTGTCGATGTTAGGAGAAAGCAAACACTCCTCAGCTCCT CTCTCGTTATGTTTCCATTAGGCATCACGCTCGTTGATGGGATCTCAACCTTAGGCAAAGAAATTAAAAT CTTTGTTTGGAATATCCATGTTAGTACAGTCAAACCTGTCTACAAAGACCACCTGTCTACAACAAGCACA TTTTTTGTTTCCCTTGAAAATGGTTTCTCATTGAAACATGTACTAAAGGAACCTGTCTACAAAGACCACC CGACTACAAAGACCATCTTTTGTGTTTCCATTAAGCGGTAACTGTAGACAGGTTTGACTGTACATACATT TGCAGATTAGATTTCAACAAAACTAAGGTTGACTTACAATGTCAATGAAACGGATTGGAAAAGAAGGAAA AACAATATATATATGTATTTAAATGAAGGCATAATGTTCTTTCCCCACAATCCATTTTTAATGAGTACAG ATAATATGTGATTTGGTTATTGTGGGTAGTTACTTTTTTTTGGATATTTCACTAGATTTAGGCATTTTTT GCTGGAATTCTTCTTTGTCCACTGTTACAAATTTCAGACTGTTTTGTGTGAAATGCTCAGATTAGATTTG CTGAATTCTGATATTCTTTCGTATGTTTCTCATTTGTTTCCAGTTTAACATTTTGTGTGGTCCTTGTCAT GTATGTTGAATGTTATGTTGATTATTGCTCCTTTTTCACCATTTTTGTTCCATTTTCACCATTTTTGTTT TCTCTTCCAAATGAGGTTATTACTTTGTTTCAGAATGTATTTAAGGGGAAAAAAGGAAACAGTCTTATAA AGTGAGAAGAAGAATTTGTGTACATGTATATCAATTTATTTAAAACAAAATGTATGTCCGATGTATTGTA TAAAGAGCATTCAATTTAAATGTTTTCATTGTTTTTAAGTTGATAATAAAACAGAAAAAAATACAAACAT GACAAAAAAATGATATTGGCTTAATGACCTTGTTGAAGATATGCCTGCATGTACTTTCTTGGCTTGTATG TTTAGTGTGTTCATACGCATAGTTTCTTTTTTCACGCCCTTGTGAACATGTACTACATCTACTATTACGA TTACTACTACTACTTCTACTGTTATTGTTTCTTGTAAATGATAATGCAATATTTTTTATGTACAATTCCA ATGGAGACATAAAAAGAGAAATGTTGGTGTCTTGAACTAATTAAAATAAAATCAAACAAACAATGTAAAA AA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds