Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT096402.1 TSA: Strongylocentrotus purpuratus WHL22.519961.1 mRNA sequence TATATGGGACTACCCTATATCTCTCACAGACCATGAGAAAAACAAATTTACCAAATATATGAATTAGTAG GCGGTTTCCCGGCAAATTTTTTATCATCATGTATTAGTCAAAACATATTCTTTCACATGATTGGTAATGA GAGCTTCCATTTCATTTTTTGAAATTGGGGCGTTTCCAATACTGGTCTTTACCTTTAATTGCTTATAATA ATTTTGATCCATTTATCCCACCCAAACTTATCGAAAGTCAGAATTATTTGATTGTATTGGGGTCGTTCGG ATTAAACGAAAAAATAGTCATCAAATAACATCAATCATCATTAAAGGCCCACTGCACTACCTGTAGCTAC TTGCGCCCTATAACAAACAATGCATACGGTAATCGGTGACCATTGGTCCCCCTTGATCCTCTTTTTCTTA TGTTAACTGAGAGCTGAGTTGATGAGATAACCACCTGTCCATGACATTGCAGAGCGGTCTAATCCCTCCT GTAAACTAGTACAGATAAGCTTCGCTTTAATATGTGTCCTTTATAATATTGTCTAAACACATTAAGTCTC GGAAATGGATTGCTTGTAAACTTATTTAAATTGCTGTTTTATATCAACTGTCCGGATGCGCTATAGATCT ACGTGGATTGAAAAACAAGAAAGAAGATCACTGCGACATCAAGGCAAAAAGCGACCTCTACGCTGTGCGT ACTTTCGTGCGTCGATGCGTCGTCGTCAAATTCCAGTCTTTGTTTGTAAACAAGTTGAACGTTCGCTCTC TGTTTACGTGCTATGCATATAACGCTACGTGGAAAATCACTGGGAATCGAATCGGGCTTGTTTTTGTGTA TTGAGGTTTACTGTACGAGAGGACTACGAGGGCGAGAGGACTGCAAGCGAAGGGCCGGAGAGGCATTATA ATTTGACGGCCTATTTTGGCCCCATCAAAGCCTGGTCCTGTGCCAACAAGACACCAACGCATCCTCAGAT ACCTCAAGAGTCATGTCGAATATGTTTTTCAGTCTTCGTTAGCTTTATAATTAATTAAATGAATCCCCTT TCCGAACGAATTTTTCTCGCGAAGCCTTTTCAGTTGGCTTGTACTTGTCCTGCGTATTCTCTAGATCCAT TCAGACGTCCTCACTGCACTGAGACTGAGTTGATCTTCCAAGCTCCACGGGAAACGGATCAACTTCAACA AGTTAACCCAATCAACTCATTCGTTAACATTCCAGTTCACTACTTCCAATGACTACTTTGTTGCCATTTA GGTAATGCGTTCCTTTGTGTTCCCGACCGTCTGCCCTCAGGATTCTTACCCGAGCCAGGAAACGACACCG ATAACCAAGATGCCAACAGGTGATAAGATGACCGTCTCTCAGCGCCCGCCTGCTACGGCAGCCGTCCAGA TGCCCGATTGCAAGGCGACCGCTGAGAATTACGCCAACAACAACATAGCCGATGAAACATGCTTGCTCTC AGAACAAATGGACCTCATGATGAGTATTTCGTCTGTGGAAGACTTCCACAGTGGTCTAGATGACAGCAGG AGGAAGCGCAAGAAGAAGAAGAAGAGGACTTCAGGAATCGTGCCAAATAGATTTGAAGATGTGTATGATT TGACTGGAGAGCTTCTGGGCTCTGGGTCGTATGCTTCAGTGAGAACCTGTCGACAGATTTCTTCAGGAAA GGAGTATGCCGTCAAGATGATGGAGAAGAGACCAGGAAACAGTCGTACCAAGATCTTCAGGGAGGTAGAG ACACTCTACCACTGTCAGGGACATAATAACATTCTGCAGCTGATTGAATACTTTGAAGACGATGACAGGT TCTACCTCATCTTTGAGAAGATGTACGGAGGTGCCTTACTGCAGCACATCGAGCAGCGCGGGACCTTCAC TGAACAGGAGGCTAGTCAGGTCATCCGAGACATCGCCAGTGCCCTCTCATTCCTTCACAACAAAGGTATT GCCCACCGTGACCTCAAACCAGAGAACATCCTGTGCGAGAGCATGTACAGCATCTCACCAATCAAGATCT GTGACTTTGGCCTTGGAAGCGGGATCCACCTCAGCAGCCAGTACAACACCCCCGTCACCACGCCCGAGCT ACTCACCCCCGTGGGCTCGGCAGAGTTCATGGCACCGGAGATTGTGGAGGCGTTCATCTACGACCTACAG GCCACCGTGTATGATAAGAGATGTGACCTCTGGAGTCTAGGAGTGATCCTCTACATCCTGCTGTGTGGCC ACCCGCCCTTCGTAGGGTCCTGTGGTGAAGACTGTGGCTGGGATAGAGGAGAGGCCTGTCAAGACTGTGA GGAGCTGCTGTTGCACTGCATACAGTCTGGGGAGTATGACTTCCATGGTGCGGAGTGGGAACACATCTCT GCTGGGGCCAAGGATCTTATCTCACACCTGTTGGTTCGGGATGCCAAGCAGAGATACACCGCAGGCATGG TCCTCAATCACCCATGGGTCAAACAGCCTCCAAGCACACCTCTTCTGACCCCTGCAATCATCAAACGCAA CAACAGTGCCAAAGATCTGAGCCAGTTTGCAGCGGATGCTGTTGCCTGCAACCGCCTCGTCGCTCAGAAG GAGGAGGACGAGATTCAAGAAGAAGTGATCGAGGAGGATGTCGATACCGAGGACGACGGCGGCATCTGCA TCATCAGACCCTCTGGCCAACTCAACAACGGTGGACTCAACAACTTTGGCCTGTCGCCTCCGGGTCAGTC GGCATTGGCCAAGCGACGTGCAGCGATGCACAGCCAAGGGAGGGACCAGTGTATTACGATCCAGGCATAG AGGAGTGGTCTTTGAGACGGACTAGATTTAGGACAGTGTGTGAAAGATTCTTGGTAAACCTCATCCATCA AAATCAGACTAATTGACGCTTTCTTGATAAAGCATGGAAGCTTGCAAAGCTTAACGGACTTGATGTGTGT CTTGAGCAAATTGTGACCGACCAAAGTGTAGTTGATCTTAAGGCAATGATTGAGGTAGGAGCCTAGCTCT GCTCGTTTCGTTGGCCTGTAAGTTTGTAAGAACGGATTCAAGTGTAATAAGGAAAATGGAGCTTTCGTAG AGTAAGAATTCCATGCAGACAGTGGCTTGTGCTTCATTACTTCTGGTTTGTTTGATTTATTTAGAGCTAT TTCCTTGTCGGAAACAGATTGAATTTCTCTTACCTCTGTTGTACCCAATGCATAATCACTGACTTGTTTT TCACATTGTGTATAATTTAAATCGAATGTCACTTATGGGTTATCGACTTTGATTTGTTTATGTATATGAT TATCATGTACAATTTGAAAAAGAAAAAAAAAAGAAAGAAAAAAAAAGAAAAACAATAGAAGGTCAAATAA CCCACTGACTAAGGCAAGCCAATTTGCAAGTAAACTATGAAGCACGGCTACGTGTTCTGTGGTGACTTTT TCTATAACAGCATTTGTGTATTCGTAAGCCAATGTGAAAGAGAAGATCAAATATTTTTTAAACAGTCTAT TTTTATTTGTTGGTTGATATCGTGCAAGATTTGATAGTCTTCCCTCTAGGAGGTAGAGATGTGGGACGGG GATCCTAATGTGCTAGTCATTTCTCATTAGATAAACATGAAATAAAAATACAATAAAATGGCTTATTAAA GTGCTGTTTTTCGTGTATGAAGGACCGAATAAATTCACATTTCTGAAGCCATTCGTGCGAGAAACATCAG CATGTTTAGTAGTATTTCAAAAATATCAATATCGTTATTATTTTTGATCGATAAAACATTCCATGTATTT GAAATTTGGCCTTTTACCAATATCAAAAGGTTACTAATGTTTTTGTTTACCAGCACTGAAGTTGCTTCAA AATAATTATAGGGCTCCTTTTGTTTTGTTTTTAGAGGGTGGTTATGTTGGCATTAAAATTTTACTTCAAA TTCATAAAAGTGGTCAGTTCCCTATGAAAAATCATGCAAAATGTTTATTTTATTCTTTGTACCTTTGTGA AATTCATTTCTTGTACATACTGTTTGGATTGTGTACAGATTTGTAAATAATATGCAACAACAAGAGAAAA GGAATCATTATTGCATGAGGGAGAACGTTGAAAGCTTGAATTTGAAGTGCTATTAATAGATTATGTTCTA TAAGTCAGTCGGTCATGGGGCATCGCCTGTTAATGAACAGAACGGTATACTTTTAACATTACGTCTGGAA AGTTAGATTTAAGATTTAATTTTGCAAATCTTTACTACATTAGATTACTTGCACAATTCAAAGAACAACA AAAAAAGAGTTAACTTTGTGTACTCTTATTTGGAAGTAACACAAGAATTTTCATGTTTCTGATCGAGTCT GACGTGCTAAAAATGGTGATGACAATCTAGGGTAAAGTCCGCCATATAGCGGTTTAAACAGTTATGGGGT TCAGGCTCTTTCAGATATGACGCGGTAAACCACAAACAAAATAATCCACGTTTGTAAATGAATGGCAACT CAACTGCTTGCATTAAGGTTCAGTGCACATTTATTGAGTCTGTGTCATAAGATAGAGAAATGTGCCAGTG TATTACTTTAAGTCAACATAAAAATGATGCTGTGATTTTGCCTTGTCATATCAGAATGAAGCCTTAGATC TTCAAAACACGTAGAGAACCATTCAAGTCTTCCTTGTACTTGTGTGTTAAAACAAAAGACAGTACACACC TTAAGGTACAGTTCAAAGTTCATTGCTACAAGACTCTTTCATTCAGAGTGCACAGATGAGGGACACTGGT CACCTGATCGATCCTGTGCTATCTACACTGGTCACCTGATCGATCATGTGGTATCTAAAACGGGGGCATT GTCTGTCATATGTATCTGCTTCATAATGCGAGTTTTAATTGTGAAGGAGACATAAAACGGGATATATGGC TAAAAATGTTAAACGGGATTGGAAAAGAACACTTTGCATACCTTTATGAAATGAAGGAAGGAAAAGCTGT ATTTAAAAAAAAAGGGATATGTCTCCAAAAGGGGGAAGAAAAAGAAGAAAAAAAAGATGGGACAGTTAAG GCCAATGCGATTACTAGTAAGAAAAGCATGTCCAGTTTTAACACTAACATTTTTTTGGGAAACTTTCCTG TGTCTTTAAAAAGGGATCTTCAAATCATGCAACTCTTGTTGGTTCCCTATCGCAATGACAGGGAAACCTC ATGCAGTCCTTCCAATCAAGAAAGCCCCCTTGTACCACTGAACTCCCTTGTGATGTGTAGTACCTTTTGA TAGGAACCTGGTGCAATTCTTGTGAGCGATGTAGACTAATATCGCTCTAGGTTTATTTTCATTATGGGTA CAGTTCAAAATTACACTTAATTCTTCTGATGAATCATGTGGAGTTGTTTTTTAAAACAGTTTCCCCTGTG AAATTGCACGTTTCTGCTAAATGTTGATTTATAGAAAGGCATTTAGAAGCAGGTCTTCTAAGGCTTTTAT AGATCTAGTTGGGGATTACTTACTCTTTGCGAGTCATTTAAAATAAAGGTTTGAAATAAAATTGAACAAA GACGCTATGTGTGGGTCTACGAGATTAGGTTGTGATATATATATATGAAAATATATAAGTAAAAAATAAT AAGTAAAAGCTAGAAAATTTGTTTAGTTTTGGTCTTGAATGGAGGTACGATTCACATACGTATTGGGTTT ACTTGTGCTCAAGAACACATGTGCAATATAAGTTGAGCTTTACACATTGTTGATCTAAAATATATATCAA GTTACTGAAGGCATTATGTCGTGTGAAATGAAATGCAAATTCAGATAAGAAATTTAACTTTTTCATTTCC ATTATCATTAAAATCTTACCAGATATGAAACTGGTTTTAATTTCAAAGTGATCAGGTTTTCATTTCCTTT GGTGCATTTTAGAAGTTTATCATTTTTATACCGATTTGCTATCCTTTTTGTATTATGTTTTATATTATTT GTAACTTTTGGCCCAGCCGGGCCGTTAGATTTCTTTTTTCATTTTTCTAAGTTTGGGTATTAAAACTCTC TTATTTTTCTGTAATGCAAAACCAGAAATCTTCTGCAAATGGCAAACAACAGGGATTTTTCACGGCAAGG GATTTTTGGAAACCCAAGTATTAACATTGTTGTTGTAGTTGTCATTCAGTTATTATGTGAATATTAAGCC ACTCACAACATCTATGGTTATTTCAGGGGAGAGTAAGTTTCTGGTTCTGCAAGATTTTGTTTGAAGGTAG GGTTAATAAGACATGGCCACATCGAGAGATGTCGAAAGCAGTGTAGTTGATGTTCATTCTGTAGGGAGTT AAGGACGCTTTTCTTTCCTGTATTGTATGACGTGTACTAGCTTTCAGCAAAGAAGTTTCATGTCAGCCTG CTGGCCAGGCTTATGCTGTTGATTTTAAGAGAAAATGTGACACCTCTACAATGTTTTTCATAGAACTTTA TTGAAACACGGCATTGATTAATTGCGTTTTCTTTTGGTACAATATTGATGTGAGATCAAAAGCATTCAGG AAACGTGACATGTTGGCATGAAGGTGATCTGAATGAATGTCTTCCTTCATGTTTTCATGCCGTGCAAGTA TTTTGGCTTTAGTTGGAAGCATCAGATGATGGGATTGCTTAGCAAATATTTTGCCGAGAATTCAAGATGG GTGCACTCATCTATACATGGAGTGTGTCGTTTTGGAGAGTTATGTGAAGGTCACCTTTGACTTCCTTTCA CGTTATGCCAGCAGGTCAAATTTTCTTGTCTAATATGATATGTAGATGCCATATGCAGTGCCTTTTTTAG GAGATGTTTTGAAGAAAATGACCATTCCTACCAATATGTGGTGATAAATTTAAGGGGGGGGGGGGTATTA AAAAAAAGCTATCATGTTTGTGCTATGTGAGAAAGGAGTAAATAATGTGCATTCGTTTTTTTCTTGGAAT GGGGGCATTATTATACGATTGGTAATTTGTTTTGGAAAAAAAGTTTTTTTAAACGAAAACGTGAAATTAA ATATTCAGGGGGGTTGGGAGAGATATGCAGGTTATCAAGATGTGTATTCTACAGTTTACAGAGCTGTGAA AGGATTTCTTACTTTCAGAATGGATATCATTATCAACACCAGACAGTACTGCTTACTCACGCCATCGGGG TCCAATTTAGGGGTCTAATTCTTTTGTACGTTTTGTGTGGGATAAGTTTTCATTATCCCCCATCTTCTTC ATGGGGTGTGTTAACATGATTTCATCCTTGGTTTATACATAAGAATGATGTTTCTGTGTGAATTTAAGTT AAGAAGACTCAGATGTATGGGTTTTGGAGGTGATTTTGGCTTGAACTATCAGTATTGTAGTACACACATT GTCTTTATGTTTCTGTGGAGAAGAACTTTTAAACACAGCTTTATTTGAAAAACACAATGTATTTGAGAGA TCCAATAAAAGTCTGGAAACAATATCTTGGTTGCGTTTCTATTTTCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds