Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011678956.2 PREDICTED: Strongylocentrotus purpuratus lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (LOC582235), transcript variant X1, mRNA GCCTCTTCCTTGGCTTACATGTACCCATGTGTATGGTCGACAGTTTCAAGGAGCTTCTTATAATTATACA AAATGGCGAGCTTCATGAGATTTTTGCAGCCCAAGAACGTGTTTGTTTACAACCGTTTTTCATCAGGTCT GCAAAGCTCACTTCGACATCATTCATCATGCATGAACCAACAAGAGAGAAGCCAGCCATTGCCTAGCTGT CTGTGGTCCAGCTCAAGACCAACCAAGAGGGCAAAGCAATCAATGTCATGTTCTAGAAATGGACCTACTT TCTCAACAGCCATCAGACAGATATCAATTTCATCAAGATCCTGTGGTGAGGTTGTACAATTTAAGCTATC AGATATTGGAGAAGGCATCATGGAAGTAGTGGTTAAAGAATGGTATGTCTCAGAAGGAGATACAGTTGCT CAATTTGACAGTATATGTGAAGTACAGAGTGATAAAGCCTCAGTGACCATCACCAGCCGATTTGATGGGG TCGTCAAGAAGCTTCACTACGAGCTCGAGGAGACCGCCAATGTCGGCATGCCTCTGGTTGACATTGAATT AGCAGGAGGTGCATCTGCGAGTCAAGAAGAGGATGTATCGGGTGAAACATCAAGTGACTCAGATAGCGAT ACAGAACGGGGAGCAGTGTCCACTACCAGAGGCAAAGCTAGAACTCTGAGCACTCCAGCAGTCAAACGTC TTGCCATGGAACATAATATATCATTAAATGATGTGCATGGCACAGGTAAAGATGGACGAGTACTCAAAGA GGATATGCTACGTCATGTAGAACAGCTGGAATCAGGAGTACCTCAGTGGAAACCAGTTGCTGAGGAGCTT GAACCTCCACCACCGCCATCGTCCACAGCCAAACCTATCAAAACCCCAGTCGTACCCCCTTTCACTCCTA CCCCTTCACCTCCAAGAATCCCTGTCCGGGCCGTAGTTGGCCAGGACCGGACAGAACCCATCAAGGGTAT CCACAAGGCTATGGTCAAAGCCATGGTCCGGTCTAACGCCATACCTCACTTTGGGTACAAAGATGAGGTG GATGTGACAGAGTTGGTTGCACTTAAGTCTCACTTCAAGGCAGCTGCTGCAGCCAGGGGTATTCAGTTCT CTTTCACACCATTATTTATCAAGGCAGCTTCAATGGCCCTCTCCTTCTTCCCTGAGATTAATATGAGTGT AGATGAACAATGTGAGAACATGACATATAAGGCAGCTCATAACATCGGCTTTGCCATGGACTCACCTCAA GGTCTAATAGTACCCAACGTGAAGAACGTCCAAGCCTTGACCCTGATGGAAGTAGCCCTAGAACTCAACA GGATCATGGCCCTTGGGTTGCAAGGCAAGCTGGGACAAGCTGACCTCACAGGGGGCACATTCACACTCTC AAATATAGGCACAATTGGCGGAACATATGCAGATCCTATCATTTTTGCACCAGAGGTAGCTATAGGAGCA ATAGGACGAATGCAGGTACTACCTAGGTTTGATGCAGATGGTGACCTGGTCAAAGCCCACATCATGAAGA TCAGTTGGTCAGCGGATCACAGGGTCTTGGATGGAGCAACCATTGCAAGGTTCTCAAACCTATGGAAATC TTACCTAGAACAACCTGCTACCATGCTCATGGACATGAAATAATATACTCATATGCTGCAAATCTACAGT GTAATATAGTACATGGTTTCTATGGTGTGTGTCCCCTGAACACAGTTCACTTAAGCAACATGAAGCCAAC TTCAAATCATCATTTTCTTCAGCTGATGGTGGCGGGAGAGTATTCACCCAGGCAGTGAATAAAAGAATAT GTCTGCTAGAGTTTGCATGTTGATTGGTGTCATGTGTAAGATTGAACCATTATTTAGTTATTCAGGGGGG TGTTTCACAAAGATCCTAAGTTGAACTTATCTGAAAGTTGGACTAAAAAATTATTGAAAGCCATTAGCAT CTTTGAAAATATTTGGTAAAAGTTATTTTGAAAGGCATAAAATGTTGATTCAAATCATTCATATTTTCTA TCATCAAGTAGATTTCATGTTATGGATATGGAATTTATAAAAAGTCTAAAATACTTGAATTTCTGCTTTT AAATATATTTCATTTTAAGGCTCCAATGGCTGTCCATAATTTTTAAGTCCAACTCGGTGTTAAGTTCTAC TTATGATCTTTGTGAAACACCCCCCCTGGATTGTAAGAGTGTCTGCAGTGTGTGTAGACTCCTTCCTCAG TGTGTTTCATAAATATGAGGGCCATTCAAGAAATGTATTCAAAAACTTCGGTAACCCTAATACATGGAGT ATAATTCTTTGTGAAAGAATTACCAATCTGTTGAATAATAAATCTGAAACAACTTTGGCTGGAGGCTGTC GATGCAAGATACATATTATACCAAAATCAGCTTTATATCTAATGGGTTTAACATTTTTGGTCTTTTTCTA TACTACGTGAATTGTATGATGAATTTAGTAATTTGTAATATTTTTGAAAAATTAGTTTTGGCTGAATCTC CTTTCTTTGCTTTTTAAATACGGGTTTGTAGCTGTTGTGAGGTCTAAGGATTCCTCAAATTTCCTGCCTA ATACAAATTTTTAGTGATTGTGTACTTGTTATATTGCATCATGGATATATCAGACTGGATTTATTTGTGA AATTATCAAACCAATTGCGCAAATTCAAAACACTAAATGAGAATTATCGAGTTTTCTCTCCATCTCTCTT GTATCTGGCAAGTTATTGGAGCTGATGTGTGCTATTTTGTATGATATATACAGACAGACAGACCTGCCAA CCTTTGGAGTTCAAATACTGTATTCTTTAATCCCAAAAGTTGTATTTTATTGACAAAAGTTGTATTCTTG AAAATGAACACAAACTGTTGCGCGGAGCAATGCCTCTTACAGTTCCTACATACAGGAAGAATTTTTTTAA TTGGATCATTGGTTGAATATGCATGATTTCGTCATGACTGGTGTGTTCGATGAACCAATGAATATCCCCA AATGGCCAATGTGAGATTCTTGAAGGATACTTTACAGGACAGAATGGGCATTTTTGCCATTGAAAATGGC ACACAAACACACACAAAATACAAAAGAAAATATTTATTTTAAACAAAATTGTACCGTCGTATTTGCTTCT AAAGATCGTACAAAATACGACTAAATCATACTGGTTGGCAGGTCTGTACAGAAAGATTCACTCTTGGATT GTATTGTTCTATTAAATATCATCGTACATTGTCATTCACATAAGTGTATCTTTAAAATTCTTATATCCCA GAGGAACAAATAAAAAAATCTGTATTTTTTATTTTATATGTACATGTAGTTTTAATGGTCATCCTTTTAT TTTGCATTTATGATAGCTTTTTAAAGGTATAGAATGATTTGAGGGAATTTGCTGCATTTTGTGTTTTTTT TCCTATTATCCACAAAAAGGATAGGAATGTCCTTTTGTCACTAATGATACTTTAAACATGATCTGCATGT TGATGCATTTGATTGTTCATTGCCAATGTTTTCTTTGGGAAATATTACAGCATTTTTTGTTAAGGTAGCT AGTTAAATTATTGAAAAACATTAACGATTATGAAAAAAACTATTTCAGCTCTCTTTTTTTGTAGATAGTT TAAGCCTCGGTCACAAATGCCATTACGAACTGTTACGAACAGTTTTCAGACAATGGAAATTTGGGAAGAC AATGGAAAAACGGAGATTCGTACAAAATAATCGTTCGTACGAACCTTTGTGACCGTAGCTTTAATCATCA CAGTGTGTAGCATAAATCTACTAATCAATATTTATTGTGCAATTTTCTAAATTTGTCTGGATAATGTGGA AAGGGTTTGGATATTTTTTTCGTTTTGATATACAGTGTTTCAATAAAAATAAAATAGTACTCCAAACTGA TTTTTCTAATAAAATTATGGTTGAGGGTCTATTTAATTGGATACCACTAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds