Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030996743.1 PREDICTED: Strongylocentrotus purpuratus sodium bicarbonate transporter-like protein 11 (LOC579418), transcript variant X1, mRNA CTTGTTTCATTATTTTCTTTCATTTACAGATGAGGAGGAGGAAGTCACATTGATGTATGCACAGCACGAG AGGATCCCTATGAAGGATTTCAGCGCAGAGGTCAGAGCCTCACTAGACGTTGGGAACTTTGTGAATCGAG CCATTCTCCTGCTGGACATCAACCAGACCAGTCTAGAGTCCATTGTGACCCTTCTCCTGGCCAAGATGCT GGCTGGAGATGAACGCTCTGACATGATCATGAAGGAAGGTCGGGCTGCATTGATGACCCACGATTCAGTT CATGTACTTGCTAAGACTGTGCAAGGCACCAGTACAAGCGAAGGCGGAGGTTTCGACTATGATCAGTCGT GGATATGTGCATTATGCTCCTTACCATCGCTGCAGAGACGCAAGGTGGCCATCGCCAGGCTGAAGCACCC TGCCAACTTGGGACGTACGAGTCAAGAGATCCGTTTCTTCATCTTAGTCCTAGCTCCCATGAGGGAGAAG GGTACTAAGAATGCCCTGGAGACTGCCAGGACGTTTGCAACACTCCTGGCTGACATCGAGTGCAGGCAGA AGCTCCTGGAGGTTCGATCAGCCCCCGAGGAGTGTATGTCTTCCACATCCTCTAGGATGGACACTAAACA GACAGATAGTCTCTCTGTTCCAGAGTCTGCTCCTGAGACGGACGTAGAAGCAGAGGAGGAATTCAAACAG ATGCTTCATCAGCATGCCAAAGATCTTGCCATCCAGCAGAGTTACCCGCCCAGACACTCCCGAACGTCCA GACCCAGTGTAGGACCCTTCGACAACTTCAATGAACAGGGCAGCAGTCAGAAATGTTGTATAGGGCGTGG CCTAAGGTCAGACCTCAAGAGGAGGCTCCCTCACTACTGGAGTGACTTCCGTGATGGGGTCATAGGTCAT AAGACGTTGCAGAAGGTCATCTCCACGACGCTGTTCCTCTATTTCGCCTGTATCCTTCCATCCATAGCGT TTGGAGTACTCAACGACAAGAACACCCATGGATTGATTGACGTGAAGAAAGTGATCATCTCCCAGACGAT ATGTGGCATCTTCTTCTCGCTGTTTGGTGGACAACCTCTCATCATCATGCTGACTACCGCTCCGCTTGCC CTCTACATCAAGATTCTCTATACGATATGTGAGGACCTGGATCTCCACTTCTACTCTATGTATGCCTTGG TCGGGGTCTGGAACTCTCTGTTTCTCATCATATACTCTTTCACCGATGCAAGCAAGCTTATGAAGTGGTC TACAAGATCAACGGAGGAGATATTTTCTCTTTTTGTATCAATAGCATTTTGTGTAGATGCTTTCAAGGAT TTGGCTGCCGAATTTGAAAAGCATTACCTTGCAAGCGAGTGCACGGGGGCAACCGCCGTGGCGCTGTTAA GCACTACCACACCGTCCAGCTTACTCTACAACGATAGCAATACCGACCCCACCACCACCCTCTTGAGCAA TATCTCCACCCAACTGTCCACTACCCTCGCTTCCACTCCGGAGTGCCATAGGGATTCCAGTATCCTCTAC CTGCTACTCATGCTGGGCACACTCTGGCTTGGTGTGACGCTCTACAACTTCACCAAGAGTCCATTTCTTG ATGCAAGCAAGCGAGAGGCTCTGGCCGACTACGCCCTTCCAGTGGCCGTTCTCATCATGTCCTTCGTCGG ATCCTACGTCTTCAGGAGTACAGAAGCGGACTTGTTTAGCTATAACGATGGTGAAGCTCTGAAAGTGACC AAGTTTGAGGGGATCACTATCGGTATGGTAGCCGGCTCCATGGGGCTAGGATTCTGTCTCTCTCTACTCT TCTTCATGGATCAAAACATATCTAGCGCCCTTGTTAACAATCCTGCTAACAAATTGAAGAAAGGGACAGC GTACCATCTGGACCTGTTTGTAGTAGCCATCATGAATTGCTTTGTGTCCATCTTTGGTCTACCGTGGGTC CACGCTGCTCTGCCTCACTCTCCGCTGCATGTGAGGGCGCTAGCCGACGTCGAGGAGAGAGTCGACCAGG GACACGTCTACCACATCGTGGTGAGAGTACGAGAAACGCGTCTAACCACACTCTTCTCGCACATCATGAT AGGACTGTCCATCATGATGCTACCAACCCCTCTCCAGTACATCCCCAAGGCTGTCCTCTACGGTCTCTTC CTCTACATCGCGTATACCGCCCTCGACGGCAACCAGCTCTTTGAACGCATCGTTCTACTCATCACAGAAC AAGCTGCCTATCCTCCCAACCATTACGTGAGAAGAGTACCACAGCGTAAGATGCATCTCTTCACCGCTGT TCAGCTTCTTCAGCTCGGCATCCTCTGTGGGTTCGGCTTCTCCCCGTGGCCCTACCTCAAAATGGTCTTC CCTCTCCTCATCCTCACCTTTCTACCTATTAGGCACAAGTTAGTACCATTCCTCATTGACCTCAAGTTTT TGGACGCTCTGGACCGTAGCCACTAAGTCGGTCATCGGAAAGGCCGCTCGCTTTGACCGATGACGACGAC AAAGCATCCAAGCTCCATCCATGTGTGACCGTTGCTCGTTATTTCTCATGCATTATTCATCATCATCATC ATCACCACCGGTCTCCACTCCACAAGAGACGGTGGGCAAGAAGTCATCGTGCAACACCTAATGATTGTAG TTTCATAGACATCCCCTCTTTGTATGTCTTTTAATGTCCGTCTGTGTGTCTCTCTTTCTCTCTGTCTGCA TGCATTTCTTCTTACAATACAATTAGGGATATCCCCTCTTCCAGGGAAGGCCTGCTCCAGAGGGCAGCAT TTAGGATGGGTCCGTACAGAATGCTATGCGGAGGTCTGCACGATCTCGTCTATTTCGCAGCTGAATAGTT TTGAATTATTAGACCAAATGTATTTGTAGTATTCTTCGATGAATCGAATGAGCAGTGGTATCTCTCATTA GGAAAATCATCGTACATGAATCCAGGAATCATTGTGAATCTAGTGATACAGGAAGCATGTTTCCCATCTT AATAAAAGATCTGCATGTAGCATTTATCTTCAGCTTTTCAAAACAGTCATTCTATTCCTTATACTGATAA GGATTCAGGTGAATGAAGAAGAAAAAAAAATATGAATAATCCCCCCCCCCCCCTCCATAGGCAAACATGG TTGCAAGTAATTGTTGACTTTTGGTTCTTCAGCATGAAGAGTTCAGTCAACTATCTTTTTTTTTTAAAGG CATGCAGCTTAGTTTTTGACTGATACACATGTTGTAACAGCCAACATCTTATTAAATTATGATATTTTAT GCTAGTTTTACTCTCTCTTTATCCTTGGGTTTAATGCTTTTCTGCCCCCAACATACTTGATTTCCATAGA ATGGTTCTAAGGAGGATCGACATAGCTGATGAAAGTTTTGATCACCTTCCAGTAAAACTTTGTGTAGAAA TGGTCTCCCCTTTATGGAATGTAGATAGTTGACAGCTTTTCTGTTTTAAATCTATACACTTTCTAAAGGC TTGTTTAGATATGAAGCAGTAAAACACAGTGTTTTTTACAATGTGTAAAAGAATGGCGTCTACATGCACA TAGATCTTACCTACGCGTATCCACTGAGGTCTGTGTTATAAGAAACAGAAATGTGATGTGTACACTTACA TCATCATTTTAAAAAAAAACGCTGCTGTAAACTGCATCACATTTGAACAAGCCTTAAATTGTGCATGCTT GTTTCAATGTTATTTTATTTTGTATCAAGTCGACAATCATTTCATATAGCCCTTTATTTCTGAAAGTATA GAAAAAACACTTTCCCAAGTTCCCGAACACGAGGGCAAGAAATTTGATAAATATATCTTGTTGAAAGTCA AGCAAACAAGTTATTTTGTTGCAACCGTTCGCAAAGTTTCATAGGATTACTTTAATAACCTGAGATACAT ATTTCCTATGTAAAGCTAGGTATTAATGCCAGTGAAAAGTTGTAAATATGTTGTTGTTCATTTTCATGTC AGCGGACATGAAATGTATCTTGTTCTATGCAGGAATTTTTTGTAGAATTCCCATGAATATGTACATATGT TATTTGAAACGAAAACAAAAAAATAGAGTTCGGACATATTTTTGCTCTTTTTGCTGTATGTTAAAATACG GGTGGAAAATTGGCGTGTGAATGAATGAATTACTGTACCGTTATTAATTACTACTTGAGAATTAGTACTG TGAAAACACCTTTATATCTATTTGTCCTTCAAATGAATTACACAGTTATTTATATTTATTCAAATACCGG TAATGATGTAATTGGACTTCTGATAAAGCGTGGCATTATTCTATACTCTTTGGCATTTCATATTTCATGT AATGTGTTTGTTAACAGACGTGTTCTAAATCTTCCTGCTGTTGTGTTTCACTGTCAAATCTACACGTTCG ATATGTTTGGTTGAAGTGTTCAAATGTACACAAAGAAATAGTAAGATACCTTTGATACGATGGCTTCACA ATCAACAGTTTCTTGTGATGCATTATGGGAAAGAGTCGGCATAAATATCAGCTGTGGCACTATTATAGAT ACAGGCCTTTAATCAGAAGTTTTTGTGGGGAGTTTTGAAAAGCTTATCTGGGGTAACAATTAGTGCTGAT ACCAAGACAGTCCATCTCCTGGAATGTTAAAAGATGTTTACCCACGAGCTGAAAAATTGACCTATTGCGG CTTGCCATTGGGGGCGCTGTTCATTGTGAATCCAGCCTCTTACACATCGTCACCCGTTATGAGAGCTATT CAAAGTTTAATACTCCATCAGTTTTAATGAACATGTAATCAGTACCATGATGAATTGGTTTACAAGGTAT ACAGAAGACCAACAGTTGTGAGAATGACAAGACATAGGAATTCCTTCGGAAGGCCCGATTTAAGAATGTT CTTGTCGAGAAGTTGGATATCTGCACTGACTTTTGTTGCTTTGTAATTCTCAGTTGAAAGTTGTTTGTGA CGTGAATAATAACCATTCACTAAAGATCTTTACAATCTGTGTATGGAACTGTGTTTGGCGGTTACACCGT AATACTTTCATGACAGTTAAACTTGAAGTCGTTAGTTAACCTTGACAATAACACCTTTAGCTTGGAATCG GATGGCTATGATAGTTTGTGTTGATTCTGAAGATAACAAGTATCTACCGGTAGTTAAAAACCATGTACCT TGAGTTACGCACAATCAAAAAATATTTTTTTCATTTTAAGCTTTGAGTTCATGCTAGTTGCATTATTTTT CTTATAGAGTTGTCAGTTTGTTTTGCTCTTGCCCTCAAAGTTATCATTTTGGCATTGGTGTGCTTTGCAT TATAAGCTCCTATTATAGCTTGTTCAACAGAGATTTGTGTGTTGTATGAAGTGTTTCCAAGTTGATTGCT CTTTGCTTTGTTTTAATTTGCTTGTTTGTTTGTTTGTTTTTATCTAAAGATAAAATTGAGTTCTGGTCAT GCGATCGCATTGTGACAGAAATGGTGTGGAATCGATCAGAAAAATTTGATCATGTAGCATATAAGTATTT TTAAAGAGTGAAATATTTGCTAATATTATTTAATTCGCTTTACATTTTGTTTTTACATTAAGGCTACCAT AGGTGAAGCATGTCTCTCAGTGTAAAATCTATCTACCAGTACCTTTCAGGGGCTGCTTTACTATGAGTAA TTCCATGATCAAAATTTGGTAGCAGACATAACTTTTTTGTTCATTACAAGAAATTAAACTCTGGCTATGT AAAGAATTTGGATCTGTTCAAGAAATATGACAATAACATGCAAAGAACAGAACTCACAGAGTCATGAAAA TGATCATAATTTCTTTTAGTTCCATTTAATGGAGGGTTTCACATTATGTACATGTATTATCAGGTCATGG AGAAGGAATAGAGAGGCTTGTTATTCTACAGGGTACAGCTGTATTGAAAGTCATATTCTTGATGACCTGT CATTATTAACCTGAAACAACAGAAAAGAAAATAGTTTGTGCTTTGTTAGCGATTTTAAGAGTTACACATG TATGTGCTTTTTAGGAGACTCCTACTTTTCGTCCGCTTGGAGCTACATAGGCAATATTTCATATCGTCCC ACACAGAGCTATATGTAATACCCCTGTGGATCGTGGCAGACAAAATTTGCTAATCTTACCACTATTAACA TCCATATTTATTTCGATTCTGGCTCCAAACAACTCTAAATTGTATTTATCAAGCCTGTAATTGGACTGTG TAATATACTGTTAACTAACATACTTCTCGTCGTCAATGACAAAGTCAGACTTGGGCCATTATTAAAAGGC ATGTGGTAAGCTGCCAATTTGGCGATGCAATAGGGTTCATTTCGTGCAATGATCTATCTTAATCATAACA AGCATTTACCCAGTATACAGAAAGGCATATGTAGCTCACTATTTTGTTTTGTCTTATTTATTGAGATGGA CGCTTGCGTTGTATGGTTTCTTTGCAGTTGTTTGCAGCTTTTTGACCCCTTAAGGCTTATTCAGATATGG CGCGGTCCGCAAAAAATGCCTCTGCGTTTTTTTAACATATAAAATGAATGGCAACAGCGTGCGTCAAAGG ATCTGAGCTCTGTGTTTAAAGTTACAGAAATGTAATGAGTATACTTAACATTTTTTGTCGCGTCATATCT GAAGAAGCCTTTATGGTACCCCATTTATGTTTTGTTTGTGAGTTTGTATTCTCAATTTACGTTTAATCGG AGGACATTCCCTTTTGAAAATACCTGCGGCCAAACTATCAGTAGTTGCAAATGTTTTCCTTCTCTTATCA CAATACAATGCATGAGGCATATGAGGGTTTAGTTGATTCTACGATATTTATTATTTGCACAAATGTTGTC TTACGCTAAGAAGTTTGTGACATGTACCAGCAATACTATATTAATTTTTTTTTAAATCAGAGAATTACTT TATAAATACATGTAGTGCCATCCTAGCAGTATACGCACATGCATTGTGTACTATTTAGTATTCGTGATGC AATGACGATATATTTATTTCAGTCCATCCGTACCTGAAACGTAACTTATAACGCAACAAAAAGTCGAGAT AGTGGAAACATGCTTTATCAGTGTGACCAAACAGCAATCTCTTGTGCAATCTTGTCAGGACCAGAATTTT TGTGACATGCTTAACCACGATATAATCGGCATTATAAGAAAATGATCAGGTTAATGTATACCGCACAAGC AGTAATATAGCAACTGTTTGAATATACATACGTCTATGTACATTGGGGTTGCATTTTATATGCAGGGATG TCATATTTATTGCTTACAGTTTGAGAGATGTGGTGAGACATATCATTACCTATCTTAGCCAGGAAATTAG AGGTACAATAATAATCTTCAATATCACCAAAGAGATGCCATGCATTATTGGGTATTTGAAAATGTGTAGT GCATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds