Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030995570.1 PREDICTED: Strongylocentrotus purpuratus glycogen debranching enzyme (LOC592988), transcript variant X1, mRNA AACTTTGTCTGTTCCTTCTAACTTTTTAGTGAAGTGCAGTTTACTATTTCAACGTGTACCTTTACAGCTA TATATGCAGGAGGACATTGGCACAGTGTCCAGCACACAGAGTTTAAAGTCCTAGCTGGAATCTCACTTTT AGGACTTAAAAATTTAGAAGTCTGATGTTACAGACTAGATGACTGGTGAAGTAAGAAGCTTTGAACAGAT TTGTGGAGTTGTTTTGTTGTTGTAAATCAGGTGTTCAAGTGTGTAAAAGGATTTTAGGCCAAGCTGATCA ATGCTTGGCAGATTTATTATGGCCCTAGAGGTTTGCAGTCAGTCAGGGGTGACTGGATGCAGTGATCGAG AGGGAAGTAAACAAAACCAGCTCTCTGTGTTCTGTCCTGTTCCTGGTACAGTGCTAGAATGCAGTTCTGC AGTCAGTCTGATCATATGACTCCTTGGTCTGATCTATTTTCTGTGGATTCAACTGAGAATGGGGGCCTAT ATTTATCTACTAGTTTATTCTTTGAACTGTGTTAGCCTGTTGGAACCATATTATTCACTGGATTTGATAG ATTGTAAGACTGGAGTCAAGAGGATGCTTTCATTTTGGACTTTGAAGGGAATCGTGTCAAGTTCTTGTGT TGACCATGACATTTATAAGCACTGTATAGTAATATTAGGACAAGCCCTGTAGTGTTAGATGCAGGCCTAT ATCAATGCCTTGGACTCCTTCTGTTGGATACATGTATGTCACTCACAAGTTTTGATTAGGATCGAGGGTG GAATAATTGTGAAATTGGATCTGCATGCACATCCATGGTTTTAAACACATCAGATCAAATTGGACATACC AAAGGCATGCAAGGTTCTAACCAAACCAACAATGTGATGTTGATGAATGCTGCAATTAAAACAATTAACT CATATGATTTCATTGATTATGTTTAACTGGCAAAAAGAATGCTTTGAACATCTGTGCCACCATAGTTCAT GAATCGTGATTGAATAGTGTGTACTTTGTAAATCAGGGAAAACATTGGAAATTGATCTGTGACGTTAGAT AAGTGTTTGCACAGTTTTTGCATGCATACCGTACTGTATATTTGTGAAGCGTCACATGATAAAATTTTTA TTCTAATCTAAAAACAGAAGAGGACCATTCTAAGCATCATCTGCATGTCTATGGAGTTGTTTTTTGTCTG TTAATTGCTCCATTTGGCTCTGACTGTTGCATCAATCGTTTAGCATTGAACAAATACTTACTACTCCTCT GACAGCTAGTAGTTTATCAATGATCATGTCGTCTCAGAGGCTCGGCACACATGGTGGTATTGACCTTTCA ACCCGGGGGTCAACGATCATCATGGCCAGTCAGATCAGGAAGATGATCCTCAATGAGGGGGAACATAAAA ACACAACTCTCTACAGACTTAAAAAAGGATGGACACTGCACTTCCAGCTAGGCCCATCCCTACAGGCAAG GAATGTGAACGTCTTCACCAACCATCCCCCCACAGGTTCAGGGAAACCCTTCAGCCGTAAGGAGTTCTAC CAAGTCGGTTGGGAGATGGCATCCCAATCGCAGTGTGATACATCAGAGAGATTCTGTAAGGTGGAGCTGG GCCTTGCAGGAGCATTTCAGTATTACTTCACTATCGATAACAGTACCAAGGAGGAAGGCTCTGGGTTCTT CTTGGTAGACCCTGTCCTCACCATTGCTTCAGAAACAGACATCCTTCCTCTGGACTGCATCACTGCACAG ACAGTACTCACCAAGAGCCTTGGTCCATTCTCTACCTGGGAGGATCGCCTGAGAGTCAGCCATGAGTCCG GTTACAACGTCATCCACTTCACGCCAATCCAGGAGCTTGGCGCGTCCAACTCCTCCTACTCCATCCGCAA CCAGCACGCCATCAACCCCTCCCTCGATTGCAACGGTAACAAGGTCACTCTTGCGGATGTCCAAGGTCTG GTGTCCAAGATGCAACAGGAGTGGGGCGTCCTCAGCATATGCGACGTTGTCTGGAACCACACCTCCTTTG ACAGCCCCTGGGTCAAGGAGCATCCAGAGTGCGCTTACAACGTCCAGAACTCACCGCACCTTCGGCCGGC ATACGTCATGGATCGTATCTTCTCGCATTTCAGCTCGGAGGTGATGAAGGGGAAGTGGGAAGGTATTGGT GTCCCAAAGATCATCGACAATGAGGAACAATTGCATAAAATAAGACATATACTGACACATGAAGTCTTCC CTCAGTACAAGCTGCAAGAGTTCTATCAAGTAGATCTTGAGAAAACCATTGAAGAATTCAAAGAAAGATG CAAAGCTTCCAAAGAAGCCACGCCCCAGATGGAGAGTAAACCTTGGGAGGTGGCTATCATCCAGGATAAA GGATACAGGAGATTAGCTAGTACTATCGATATGAACAAAGCCTTGGACAACTTCAATATACAGAAGCCTG GAGTCGACGAACCAGAGGCTCGGATACAGCAATGCTGCCAGGATCTCCACAAGCATCTTGAACGTCTCAA CGGCTTGGCTGCCAACGTGATGGGCGAGGATACACGACAAGCCATCGAGAATCTCATATCCAACGTCCGC TATCATCATATAGATCCTAGCGGTCCTAAGCTGGTGGAAGTCACCGAGAAAAACCCTCTCGTCAATGAGT ACTTCAAACACCCCGGACCTGCCACCAATGTCCAAACAGATGAAGCATTAATGGACTCCGCCCAAGCCCC TCTACTCATGGCGTCCAATGGATGGGTCATGGGGGATGACCCTCTCAAGAACTTTGCTGAAGCTGGCTCC AAGGTATATCTGAGACGAGAGCTCATCAACTGGGGTGACAGCGTCAAGCTACGATACGGAAAAGGTCCGG AAGATTGCCCGTATCTATGGCAACACATGCTGGAGTACACGCAGAAGGTGGTGTCTGTGTTTCATGGTGT CCGTATCGATAACTGCCACAGTACTCCCATTCATGTTGCAGAGTATTTCTTAGATGAAGGACGTAAGATT CGACCAGACCTGTACGTGATGGCTGAGTTGTTTACTGCATCTGAACACATTGATAACATGTTCATCAACA GATTAGGGATATCTTCACTAATACGAGAGGCCATGAGTGCATACGACTCACACGAGGAAGGGCGTTTGGT CTACCGTTACGGAGGGGAACCGGTCGGTTCGTTCCTCCAACCAGCAGTGCGCCCTCTACAGCCAAGTATA GCTCATGCTCTATTCATGGATGTAACTCATGACAACCAATCTCCAGTTCAGGTGCGGTCAGTATATGATC TCTTACCCAGTGCTGCCCTGGTATCGATGGCTTGCTGTGCTATAGGATCCACCAGAGGGTATGATGAGCT GGTCTATGAGCAGATCCATGTTGTGGATGAGAAGCGATTTTACACGTCATGGAACGAGAAACCTAAGGAC GGGACAGAGGTGAACTTTGACAAAGGTATCATCGGGGCTAAGAGAGCCTTGAATGAGCTTCATCAGTCCC TAGGAGATCAGGGTTATACACAGGTGTATGTAGATCAGGTGGATGAGAACATTGTAGCCGTAACACGTCA CTGCCCCGTTTCTCACCTCTCTGTCATCCTGGTCGCCCGCACAGCTTTCAAACATCCTCATAACGCACGC TACACGGGACATATACCTCCGCTATGTATACCTGGATCCGTTGAAGAGATCATCCTGGAGGCGAGGCTCG TCCAGCAGGATGCGGAGAGTACCCCGCCCTCCTCCTCACACATCACTGGTCTATCCAACTACAGTGTCCA GATGCAGACCCATGTAACGCTACTCAACAGCGAGGTGTGTGAGCTGCTGGAGCATGGTAGCCAGGCTCAA GCTTCTCTTCAAGAAATAGACTTCATTAACTTCCCTCCTGGCAGTGTTATCGCATTCAAAGTTGTACCCC ACCCCTCTGCTCGAGCCGCCCTCTCTTCCCTGCGATCCTGTATTGCTCAGTTTGGCTACCGTGTCAGAAC CCTCAGTGGGACCAGCCCTATGAGAGCCAACAACAACTCCAGCTTCCACACCCTGGCAGAGAAGCTCTCC CTCACGGACATGAACCATGTCCTCTACCGATGCGATAACGAGGAGAGGGATGATGGGAAGGGGTCAGCGA CCTATGACATCCCCAATCATGGCAAGCTGGTCTACTGCGGCCTGCAAGGTTTCATGGCGGTGCTCGCAGA TATCAGAACTAAGAATGACCTGGGTCATCCCATGTGTGAAAACCTGAGACAAGGTGACTGGATGCCTGGC TATGTAGCTAACAGACTCAAGCTAAAGCCCGCCACAAAACAGCTTGGTTTATGGTTTGAGAAAGCATTCG CACCCCTCACTCAGATCCCACGCTACCTCATACCATGTTACTTCGATGCTATAATGGTTGGAGCTTACAC AGTTATACTGGACTTGGCATGGAAGACTATGAACTTATTTGTATCCGATGGATCTTCCTTTGTGCGATTC CTTGCTCTTGGCTCGGTTCAGATGTGCGGTATCGTGAAGACCTCACCCCTGCCTGTCATGTCGCCGTCCC TAGAGGGCGTACCGACAGCTCTAGACGAGGAGACGGGGAAGTACATCCAGAGCTCCCCCACCATGTCGGC CGGGCTTCCTCACTTCTCCAGTGGTTTCATGCGATGCTGGGGAAGGGACACGTTCCTCGCTCTACCAGGA TTGCTGCTTGTGACAGGGAGAGCAGATGAGGCAAAGCACCTGATCCTTGCCTTCGCTGGCACCCTACGTC ATGGGCTCATCCCCAACCTCCTTGGAGGCGGGGACCACGCCCGGTTTAACTGCCGGGATGCGGTCTGGTT CTGGCTCTACTGCATCCAGCTCTATACCAAGACTGTGAAAGATGGCATCTCTATCCTGGAAGCCCCTGTC TCTAGGATCTTCCCCTCTGATGATGCTGACCCGCATCCTCCCGGCTTTGCGGACCAACCACTAAGTGAAG TAATACAAGAAGCAATGCAGAGACATGCCGAGGGAGTGAGCTACAGAGAGAGACATGCTGGGCAAGGGCT CGACAGGAACATGACAGACCAAGGCTTCAATGTAACGCATGGTGTAGATCACAATACCGGCTTCCCGTTC GGAGGAAGTGAGTGGAATTGTGGGACATGGATGGACAAGGTCGGAGACTCGGAGATTGGAGGCAATAGAG GGCTCCCTGCCACACCAAGGGATGGATCACCGGTAGAGATAGTAGGTCTATGCAAGGCAGCAGTGAGGTG GCTAGCAGCACTGCATAAAGAAGGGAAATTCCCTCATGATGGAGTTACTGTAAGGATAGAAGGAAAGCAA GCTCAGCTGACATACTGGGAATGGGATCACAAGCTGCAAGCCAACTTTGAGAAGCATTTCTGGATTGCTT CCGATGCGGACAAGACGTCCAACAAGCTTATCAACAGGCGTGGTATGTACAAGGACAGCGTGGGAGCAAC ACACTTCTGGGGAGACTTCCAGCTGAGACCCAACTTCCCTATCGCCATGGTCGCGGCCCCCGAGTTGTTC ACTCCCGGTAACGCATGGACTGCTCTGAGCCTGGTACAGAAGGAACTACTAGGTCCTCTAGGAATGAAGA CATTAGACCCTAGTGACTGGGCATATGAAGGAGTCTATGACAATTCCTATGATGGTCCTAACAAGAAGAC TGCCAGAGGTTGGAACTATCATCAGGGACCAGAATGGGTATGGCCCCTCGGCTATTTCCTACGAGCCAAG CTCCACTTTGCGCGAATCCTCCCCGATGCTCCAGCCGATACCTTTGAAAGCACCGTGCAGTTCATCCGCA AGACTCTCATCCGTCATCACGAGGAGATCATGTCGTCGCCATGGCGAGGGCTGCCTGAGCTGACCAATAA GAACGGGGCCCCCTGCGGAGATAGTTGCCCCACCCAGGCCTGGTCCATGGGCTGTCTCCTGGAACTGATG TTGGACCTAGACCAGGCACTCAAGCAATAGACCTGGTCCTAACAGGCTATCATCTAAATCTAGAATGCTG GACTAAGACCAGGTCCCTGATCGTTAGGAACAGGACTTGGACCTAGACCAGGCCCTCAAGCAATAGACCT GGTCCTCACAGGCTATCATCTGAAATCTAGAATGCTGGACTAAGACCAGGTTCCTGATCATTAGGAACAG GACTTGGTGCATCAGGCTCAGAATGGAATCCACACCTTGGTTATATCTGGAGGTCAAACAAGAATTTCAA AGCGGCTCTGATTGAATATACTCTCAAACGAGGTACAGCTGGAGAGAAGACAGAGCAATACCTCGGTCTA GCTTGATATGTACTGCATTTATATATTGTAGTACCAAAGTGCAGGTTTTGATGTGCATGGTGTTGCTATA GTTCACTCGTACCATATTCAGTGCAAAAATTCCTGTTTCTACAAAGCACACTCATAACTCTGAAACATAT GGTCTGTTGAGAGCCAGAAGGGCATTAACTCAAATAAGTTTACACAGAATTAACGCCCTTCTCGCTCCAA ATAGAGGATATGAAGATAGCCTGAAGTTTCAATACACATGTTCAAGTAGTGAGTGACGTATAGATACAAT CGATCCCATCTGACATTACTCAAGAGAAGGGTTTATGTCGTGTCTCAGCTGGCTTATCATTTGAAATATT CAACTACAGTATCATGGACACAACTCTCTACGGGGTCAGCAACTATTGATTACAAGAATTAAAATGCTTC CAGTCTAAAAAGAATTCAGAAGAACTCATTAAATTTGGTGACATTTTTATTTTCTGTTGTCTTTTGTTAT GGTGCTTTTGAGATGTAAGTCAAACTTTACATTCTGAAATAGTTAATTTACTTAAACGAAATCAAAATAC ATTGATGTTAACTTGTGCAGCTTGTGATTTCAGAGCGTCTGTTTGATTTTTTTCTTAAACACTAAAGAAT CCAGTCCTCTAGTTTAATAATCATAATAGCTTTAATCCAATTAAGGTGCATTAATTGTTATAAAATAAAA TATTTCATGAACTATATATATATATATATGTTGTGTTTAATAACAAACTAATTGTAGTAAAGTAAAGTAG TAGAAGTAGAGCAGTGGTCTTGTAACCAGGAGGTCCCGGGTTCAATACCAAGTCAATATGAGAGTGCCCT TTGGTAAGGCATTTATCCTCATTACCAAGTCCCTCGGAGATGACTTAGAGCCGTCGGTCCCCTGGTTGCT TATGTACAAGCATACACATCCCTTACTTAGCAGTCGGGTTAAAAAAAAATGCTAGATTAAGCTCCTTCCG TGACATTGTAGGCAGCTTTAAGAGAAAGACAAAACCAGTTAATTTGTAAATGAAACAGCAAGTTGGGGTG AGAAGAGATTGTCTGCACTTAACAATGGCACTGTCTATATTTCTGATCTGTATGTAGAAAGATCCAGCTT TGTGACGCAAACGTTAAAGGTCGATGAACAAAATGTGTAATTTTTGTATGAAATGTAACTTATCATCTTC CTTCTACTGTACTTACCCTCTATCATGCAAAAAATCCTGAAAAAATTCTCAAACAAAGATATATGTGGTT TTCTTTGAAGGCGCCAATGTCCAACCCCCTCTTACAGTAAATTCTCCCAACCAATTTTTGTATTTTCCCA ACCCTTTTTCCATCAAAATATGACATAAAAAAAAGGCTTTTAAAATGTTTTCAACCCTTAAATATTTGGA ATGGTATATGGAGCCAATTCATTGCTTTGTGAGAATTTACATTCACCTAAAATTTAATTAGATTATAATA ATATAGTCAGAGATTTTAGGAATCAATCAGATCAATTTTTCTTTATTTTTAATTTTTAATTATGGTCTGT TTTCACTCAAACTTTCAGATTATCTTAAATTGTACATCTAGCATTGAAGTCACTACCTTAGCACCCTTTT CTCTCATTTGAACAATGTTACCAAGTCCCTTTAAGATGACAGGTTTTTATCAGTATCATCTTGATGTACG AAGTGTATTCATTGATATATGTGTGTGTGTTGCATGATAGCGGCCAAGAGCTACATGTAATGTGCACATT ATTGTATTTTGACTTGATTATAATAATAATAGTGGCTAATTGTGTAGCGCACAGGTCCACCTTTTTGGTG CTCACGGTGCTTGAAATCATGAATCATGAAATTCAAAATAAGTGTACAAAGCCTGCTTCAGCTCCATAAA CTACAAAATACATGTATTATATCGTATGTTTGGAACACAGAGTTAACACCCTTCTGGCTCTGAACAGACT GTATGTTTGTATTGGAATATTGTCCTAAATGATGACCATTCTAAAGTTCAAATACACTACTGCTTTTATT ACTAATCAGTAAAATCATGGATATTTGTTATGTAGCATGAGATTGGAATCCTGTATGTCTTTTACACTAT AGCTAATTTACACTTTGGAAAAATCTCTATTTCCGATCAAATCCTTTTACCTCAACGAGTATAGTATTAG ACAAGTACACTCAGTTCATATTCACTTTATCATTATCAATTAATTACTTTGAAGATATATGCAAGCATAT TTATTTCATGTTTATATTAAAGTTTAATAATATCTCAGTTCTCTCACTCTAACCATGTGTTAAATCTGGA ATGATTTTAGTATTCATTCATTCATTCATTTCTAAATAGGAATTGTATCCCAATGTCTTTTGAATCTTAA ACATGTGTTAATTTCTGTTCATGATGGTACAGGTTGTTTATTATGTGATGTAAGTTATAATATTAAGTCT AGGTCAAGCCTCAAATTATTTGTTAAATTGCATCCATATGCACGTAACTTGCGAAGAATACAGGACAAGC TGCTTCTAAAGCTACCTCACACGAAGAAAAAAAATAACTCTATCAGTTACGTCCTCCAAGTCTTTGGCCT AACCTTCCACTAGACATAAGAAAAGCCTTATCTGTTGCTGTCTTCAAATTTTTGTTGAAGACACACTTGT TTCCAGGATTTTTTTTGGTACTTTTTTTGTATTGTGCAACTGTAAAGTAGCACTTTTGGGAGTTTTTTTT ATCACGGCGGAGTAGAGTTTATTTATATACTAGGTGAGCTTTCTGTAATGGAGAAATTAATTCCTGTAAT GCACTTTCCTATGTGATTTGTGTTTAATAATGCTTTGCATAAAATGTAGATCAGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds