Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003724496.3 PREDICTED: Strongylocentrotus purpuratus forkhead transcription factor D (LOC751845), mRNA GGGCACATAAGGTTGATCGTGTATATATACCAGTTGGCTTGATCTTGTGTGTACTCTACGGGACTGTCAA CAAACCATCACAGAGGTAGGTTCGCCGGACATGAGGAAAAAAAAGGAAGAAGATGAAATAAATCTCCAAG TTCTATGGTTTCACCTCCTTGGAGAGGATTCATCTCGTATCATTGGTCAATCCACGCGAGTGCTCTGATT CGCAGCTCGGCATTGTTTGCCATCTCCCGTCGCCTAATTATCGGGATAGGCGTTCACTACTAGCCTGTAC GCTCATTGATATGTAAATGAAGCAGGAACGATCGACAAATGACAAGCGTTTGTGACCACGTGACACGGCG AACTCAAAACAAGACCAGAGTAGAGAGCTCACCGGTGACGAAGTATGAAGGTGCTGAGTCGGCCGCAAGG GTAGACATATAGAATCGCCGCTCGCTCCGGCTTCTTTACCTGATATTCGGTCAAGCCTATTGTACTCACC TGGCTCTGATCAACATCCGACTTTAGTTTATGGAGCTGCGTGGAGAGAAGCAACTCAGTTGAGCTTCACT CGCCGAGTTTTGGGGATAAACAGTGATCCTTTATACGACACTCGCAAATCGCATACCGCATCGGAGCTTG ACTTCAGATATGATCGTGAACGCCACCGACCTGATGGAAGGGATAAACATCCGTCCTGCAAATGAGCAGC AGGGGAACTGTAGAAAGACCGAGTTGGTGGGGCACGAGATCGCCGCAGCTGCCGCGGACCTGCGTGACAA ATACCTGCCCACCTCCACGGGCTTCGGTATCGATAGACTATGTGGTTCGGCTTCGGAAGACGCAGCAGGG TCCGAGCTCGGCGACGTCGAGGTGGACATGACCCATGATCGCGAGTCACCGTCGGCTTGCTCGGCGGAAT CGGAGAAGGACGATATCGATGTGAAAGTGGACGACTCGAAATCGGAAACAGCAGACGATAAGAAAAAGGC GATTTCGGTGAAACCTCCTTATTCGTACATTGCTCTCATTACGATGTCGATTTTGCAATCGCCGCAGAAA AGGCTAACTCTCAGTGGAATTTGTGAGTTTATCATGAATCGTTTTCCATATTACAGGGAAAAGTTCCCCG TGTGGCAGAATAGTATTAGGCATAACTTGTCGTTGAATGACTGTTTTGTGAAGATTCCTCGTGAGCCAGG CAACCCGGGAAAGGGCAACTACTGGACTCTAGACCCCGCCAGTGAGGACATGTTTGATAATGGTTCCTTT TTGAGAAGGAGAAAACGCTACAAGAGGCAGCAACCAGACTTTTTCAGGGAAGCGGGGCATTTCATGACGG GTCCATATCCTATGGGGCGACCAGCATACGGTTATGCGATGGCAGGACTTCCCCACCATCCACACACATT ACTGCCTTATCATTTAGTCTCACCTCTCCCTCCTCCCGTAGCCCTACCCCTCCCCGCCACCGCACACCAA AGCATGGATAATGGGGCTCTAAGCAGTCTACTCAGTGCTGGGATAACGGGCGCAAATTCATCGACAACCT CGCCGACCAGCCGGGCTACCTTCACCATCGACAGCCTGCTGAACGGGAGTACCGCTCCACCCTCTACGAC CGTCACCTCCACTACCTGTACGGGGCTATCAGTCTCTAGGGCTCCTCACATTCATCCGCACCCGAGTCTA CTCGCCATGAACCCGACACTCGCGCTGGGCCATCTTTCCACAGGAGGCGGGGGCTCGGCATTCTCAGCGC CAGTACCTTCCGCACTCGAGCTTCTCAAATACAGGGAAGTCAGGGATTGTTTCCAATGTACGCGGCAACC CACCTCAACGTGTAACTGGCGCTAGCAGAGACAATAAAAACTTTGTAAAATAAGATTAAAAAGAAATATG AATATTGCCCATATACAGGGTGACTGCTCGGCTGGGATGAAAGGGAAGAGAAGCTCAGAGGCACAAAACA CACAGCCAGGTATTCTCAGCAAAAAAATCAACGTGTATTCCAACATCTCCCGTGAAAAAAAGACCATCTA CCTGACGGGACAAACCTGAAACGAGACATTTAGAAGAACGGAAAGACCTTTTGTTCAGTTTAGTTCATGC AGGAAATTTTGTGAAGCGCAAAAGAAGTGTGTACAAAATATGTTGATAAAGTTGAAAAGGTGAGCTGTGC GGGCTTCAGTGATCCAGCGGAAATCGGTGATACCACACGCCGAACTCTGGCGGCCAGGGCCGCGGACTCA CGCTACTAGGCGATCCGCTACTGTGAGTACAATGTAAGTTGCACTGCCTCGCTTTGACTTTTTCAATTGA AGGGTATTCCATAGATATGACGTTGTAGATTTGTATATATATTATTACGAACCAAAAAATACAAGGCATA CATAGATGGGGGAGTATTCACTGCTCCTTTCTTTTACTAAAAAGAGTTATAAATGAGAAAGAGAGACAAA GTCAAGTGTGCTATCAAGGCTATAGGAGAATTTATGGGTCGAGAAAAAAGTAAATATAGTCACAATTTGA ATATAATGATGCAGAAAAATGAATATGAATGTTGTGTTTTGTTGCTATGTGATCAAAGTAAATACAGATA TTGGAGGGATTAGTGGTGTTTTTGTCCAACAAATAGGCCCACTACTTAATTATACGTGTCATTATCAGGG TGGGGCGAATGCTATCGCAAATGACCATCGAATGATATTGGCTTTTGTAACAAACACGGGCAAGTTTGCA AGTGAAACAGAAAGAAAACCTTTTTAAGTACTAAGGCTGCCTGCAGTTTTATGTGTCATTATGTGAAATT GTATCTCAAGGAGAGAAAGAGAAATGGTCACCAGCAAATTGAAAAGGAACTCCCACTAAAACTCAGAGTT AACTTATCATATGTTGTGGAAGAAACATCCTGTAATAAAACTGTAGTAATGTTCGCACTTTTAGAGGATT TCAAGAGTAAATAGATTTATATATTTTTTTCTCATTTGTGATAGAGCTTGTTCTGAGTCAATGTCTAAAC TTGTGCTTTGAGTGTTTACACGCCAAATACGAGAGATAAAAATATGATAAAAATGAGATGAAGGATTGAA AATCACAACAAACCAAAGCGAAACTATTATCTGAAGTTTTTTTTCCGATGTCTGAAATTGTTTTCGGATT ATTCTCTCTTTAATTTCTTCCTTTCGATTCTATTTCGAATTCACATTTGGTTAACTTTCAGGCAAACTTT TGCCAAGGAATTCCCAAGAGTATTTTTGTCTTTAAATAATTCCCTTGTTTTTCATTTATAATTTTTATTG TCGAATAAATAGTTTAATACAATATAGCAGATGTAGGATGTATTAATCTGGTTTTATTTCTGGATATCTT GCCGTAGGAATAAACCGGGTAAATATATTTAAAAAAACACTATTTTCATTAAATTGTTTTAAAATTCATT CCGAACCGTATTTCTTCACGATCTAGTTACCCTTCAATATTTGATCAATCAATTGACTTTCAAAAACCAT TTAATTATAAAAGTTTGGTATTTACAAACAAAATTGAGCTCTCTTAGCAAAAGTTTTCTATTTTCATGAT CCCTTTCAAAACTGTTCAAAATGCGTGTAGGCGTTTTTTTAATTCTGTATTTCATTGAAGATATAAGACT AACTTAATGTATTATTAGTAATATTATTCTTCCTAACTTTTTGTGCCATATTTCCTTTAAAACACGCATG AGGTGGCAAAAGTAAAATTTGAGATGTTTAATGAGAGAAGTTGTTTAAGTCACAGAGAAGAAAGAAAACT GGTTTCAGTTGACAGTACAATCTCAAATAAAGGTCACCTAATTATTACCATTATTACTTGTTCCGGTTTT TAATCATTCGAATTCAAAATTCTTCTGAATAATTTATAAAATACAGTTTGACATATGCCCTATATTTTTT TAAATTAAACGTAGTCGTTTTTTTCCAAATATAAGTAGTTTAAATAAGTGTGAAAGGACGCTATAATAAT CGAATTTCCCCGATGAAAATATTGATAATTTAATGTTGTTTCCGTCTATATTAGACGCTTTATATTTGTG TTTTTATGTTATATTGAACTGCGTAATACTTGTGTAACGGTCCTTCAGAAATCATATATTTCTTTGTCGT GTATGTCAGTTTGCCGCGGTGGTACTATAAGAGACAACATATAGAACAGCCGCGGCAACAAAATAATACA GTGCAATTTCATTTTTGTAGAAAAAAATGTTGAGGTTTATCATTATTATTATATCACCGCCTTGTCAATG GATGGAATGGCCAGGTTGTTTTGCGAACAATAGACCAAAATTTGTACTTGGTAAAAAAAACAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds