Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT108541.1 TSA: Strongylocentrotus purpuratus WHL22.255582.0 mRNA sequence TTACAACACTGTAATTTGTGTAGGCCTATGCAGAGATCGAAGGAAAACAATGATGAATGAAAGGTGACAA AGAGCCAATTATTACTCATTTTTCTTGCTCTTTGATGAAAAGAAGATAAAGCCTAAATGTTGGAAAGTCA ATCAAACATGCCGAAGAAGAGAAAACGGCCAGCTCTGATCCGCACTTCTTCAAAACAGAGAAAAGATGGT GGTAGAACGGGTATTGGTGAGCCCAGTCTGTACCATGCTCTCATTATCATCTTCTTGGAATTCTTCTCAT GGGGACTCTTAACAACACCGATGCTCACAGTGCTGCACGAGACATTTCCAGAGCACACCTTTCTTATGAA TGGACTAGTCCAGGGTGTAAAGGGGTTTCTCGCATTCCTGAGCGCTCCCATGCTAGGGGCGCTTTCCGAT GTCTGGGGACGTAAATCATTTCTGCTGCTGACGGTCTTCTTCACCTGTATGCCCATCCCACTCATGAAGA TTAGTGCCTGGTGGTTTTTTGCCATGCTATCAGTATCCGGTGTAATGTCAGTGACCTTCTCATTAATATT TGCATACGTAGCAGACATAACTCCAGATTCAGAGAGAAGTCAAGCATATGGACTGGTTTCAGCAACATTT GCAGCCAGCCTCATCACAAGCCCTGCATTAGGGGCGTATTTAGCCAGTATATACGGGGATGGCTTTGTAG TATTTCTTGCCACAGCGATAGCCCTGTGCGATGTGCTCTTCATATTAGTGGCTGTACCGGAATCGTTACC AGAGAAAGTACGGAGAGCGTCATGGGGCGCTTCAATAACGTGGGAGCAGGCCGACCCCTTCACGTCGCTG AGGAAGGCTGGCCAAGATTACACCGTATTATTGTTATGTATAGCAGTGTTCTTGTCATACCTACCGGAGG CAGGCCAGTACTCTTGTATGTTCCTCTATCTTAGAACAGTTGGTAAATTTTCACCGCCAGAAGTTCCTGC ATATATAGCTTTAGTTGGAGTATTATCAGTATTTACTCAAACGATATTACTAGGGTTTTTAATAAAACAC CTCGGTCACAAGCATACAATCATGGTTGGTCTAACGTGTGAGATGCTGGAGCTGATGTGGTACGGGTTCG CCTCACAGCAGTGGATGATGTGGGCTGCAGGGGTCATAGCTAGCGTCTGTAGTATCAACTTTCCTGCCAT CAGCGCTATGATATCACATTGCGCTGACCAGGATAAACAGGGTGTCGTGCAGGGTATGGTAACAGGAATA CGCAGTCTGTGTACAGGACTAGGACCTGCTCTCTTTGGGGTTATATTCTACTTCTTTGATGTTAACCTGG ATATTGATGATACCGGCACAAAAAACGAGGAAGGTGTGATGGAAAACCCCATGCAAGAGACCATCATGCC TGGACCACCCTTTGTCTTCGGCTCTTTACTAGTCATCATCTCTCTCCTCGTTGCCTACTTCCTGCCAAAC GTCCAGGAGCCCAGTGCGGCCCCGCCCCAGTCCCCCTCCCTCAAGTTAGTTAAACTCAAGTCCCCCGTTG ATGATGTCTCTGTACCCCTCCTAACGGACGTGGACAGCATTGGTATAGAACCATCAGCAGTGGACCCTCT GAATCCCTGAGGATGCTTCGTCAAGATACAGTCAAACCTACTTTAGTGACCACCTGTCAACAAAGACCAC TGGTCTACAAGGGCCACGTTTGTTGTTTCCCTTGAAAATGGTTTCTCATTGAATCATGTACTAAAGGAAC CTGTCTACAAAGACCACCCATCTATAAGGCGACCTTTTGTGTTTCCCTTGGGCGGTCGCTATAGACAGGT TTGACTGTACTTCATCACCATCATGATGAGACTGCACATAACTGTACGAAATCACAGAGTTTGGTGCAAA ATTGGTGTCTCCTTTTTTGTGCACTCAGTGTTCCAGCTTGTGTATGCTGAAATATGGACATAGATTGGTT TCTATATACCTTCATGATCTGTTCCCCCTTTTAAGATCTGTTATGTTGCCCTTTGAAAGGTTCTGTTTAG TACATGAAGTGGCTTTGTGCAGTGGTGAAAAACACAGGATTGCAGACTTGCATAATGAGGATGTGTATGA AGTGTTGGGATATGCAGTCTGAATGCAAGTTCTGCAATTTTAGCCACCTCAATGCATGGGTTCATACCTA CTTCACATCAGCTATGGTTGAACATGCGAGGTTGTTTTTTTGACTGTGTAACACCATGTTGGCTGTATGA AATACCAAATGAGCTTTTATGCACTTTAAAGAACACTTTTTTCGCTTTGAGGGGATTTATAATAAGAATA TGAAACAGATAGAAACCGTGCAGTCTCTTTCTGAAGTGTTTCAAAGAAGCGAGTACGATGCATATTTTGT TGGAGATGGGCTTTGGAAGTCGACTTAAAAAGGGATACCCAAAGGTTCTTGTGACTTGATTTCACAATCA TCTCCCTCCACCAAATACATCCACGTGCTCTGATAGAAACTGCTTCAAATGGGCCAAAATCATGAAAAGT CAGTTGCGTCCTTTTGCCAGTGCAAGACATTGCATGCATCCGAATAGTGATGACACAGGGTCTGTGTGCC CATATTTCTTGATGAGTGCAGAACGGACTTAAGGAGGTCACAATGCTGAGAGGCAGAAGGGCATTACCTC CCTGAAACACAGTGTAATGCCCTTCTGGCTCGCAGACTCTATTTACAATTAAAAAGTTAATGAATTATGA TGTCATGCCTGCTGAACAATGCAATTAATAAATAATCACATAAGCCTGTATTCTACATAAACTGAAACCT GATGCTCGGTTCAAGCTTATGTCCAAAATCAGGTTTAACAAAGGAAGTTAGTACAGTCAAACCTGCTTTA GTGACCACCTGTCTACAAAGACCACACTTTTTGTTTCCCTTGGAAATGGTTTCTCATTGAAACATGTAAT AAAGGAACCTGTCTACAAAGACCACTTTTTGTGTTTCCCTTGGGCTGTCGCTATAGACAGGTTTGACTGT ATTTGGTCTAAATTTTCTTTTATTAAACAAAATTTTGAAACAAGGGTCAGGTTTAAGTGAATGAGTACCA GTATTGAAATCATAATTGTTAGAAGAGAAGAAGAATATTAGATTCTGTGTCTTGATGTAGGTCTGTCTTT ATGTACAATATCAATCGAGACAAATCATGACATGTCTCTGAGATAACTAGTAACACATATTGCCACATCT TGCAACCCAAGATAATATGACATTGTAAGACTGCTGTGTGGCAAAATTAATGTACAATACAATATTTGAC TATAAACTGTAACAGAATATGTATGGTATACATATGACTATAAGTGCTTAGAGACTTTGGTGGTAAGCGC TTTATAAGCACCGTTTTTATTATTAAAAATGCATGAATAAGTCACTTACATCACCAGTTCTTAATCATTA CTCACGCAGTTATAACACCGAAAAATATTGTAAATTGTAATATTTCAATTATATTGATAACAAATAAAAA ATGGTTTAGATTCACAAGAGTTTCCCCGCCTGTAAAATGAATAAATCACGAACGTCACAACAATTTAGTT TTGCTATTCAATTTTAAAAAGGCTCAAGCGTACCGATTATGAAAATTTAAATCTGGACCCTATTCACAAA AGATTGTGTGGAGTATTGCAGTAAACTGTTCAAACTTTTTCACTAACCTTAAGTCATAACCTGTATGTGG GTGGGGAAGCTTTGGAACAATCAAAAAGTATTTTAATTGCCAAATATTACACCTTTGCTGCGAAAACCAT GTTATGTATGTACTGTACTTTATTAAGTAAGATAACTAAATTTTTAATAATCTCTCGCTCACCCTAACCT ATTACGGCACTTAGACATTCTCTTTATATTTTGCTCTATGAATGTAGGGAATGTCTTTGATTCTGTCACT TAACATGTCTCACTTGCAATTTTAAAGAGTCAAATTAGTAGATTATACAATATTGAGGAGTTATTCTTTT TCATAATCAGTAAAAACAAATACTGGTTTGGTTGTACTAAATCCACAACAGGGCCGCCTAACGCGAAGCT ACAGCAAGTGAAATCATACCCAAAATAGTGACTTATTAGACTTCTTCTGTGATTTGAGAAATTATATATT TGTTTTTGGTTCAAGCTGTAAGACCCCTCTTGCCTCCCATGTGTAATGAAGCAACAATAGTCTATTGGAA ACAATCTTCAACTGTGGTGACTAGCTACATGTGAAGGATACGATCAGAGAACAGAACAATGTGATGAATT AATTGTCTTTTTCATACTGCCCACGTACATCTGTTCGCTGTAGATACAGTGTTATTTCGGTTCAGCAAGC ACTAAAGATTGAACTTGATGATCATCTCTCTACTTATAAAGTCTGATGTATTTATCAAATGTTTCCAAGG TAATCATGATTGAAGATAATTTTTATCTTTGGCCATAACTCCATATTTATGATTGATTGTACAGTTTTCT TTTAGAGATTTGCGTACCGGTATGTTCGGAAGATTCCTCACTAAAGTTTCCCAAAGTTTTGCTATGTTCT GAGGAATTTCTTGTCTCGATGTATCACTTGCGACTGTTACTGATTATTTCAAGCAATACCTTTATGTACT CTCTGTCTTGCACTCTGTGCAGCTGCTATGCAAAATTTCTCTGTTTATATGTGGGCCTTATACGTTTGGT GCTGTCCGCACAACCATGGTTCCCCGTGTTGTATGTTGTGGTAAATTAAAATAACTGGAGGGTGTTTTCG TTCACCAGTGATTCTCAACTGAAGTATTAGTGATACTTTTCATGGTGGTGGGGAAGCTGAACTGCCGGTA AAGTTTTCAGTATTAGACCATGGGATTCTTTTTGAAGGACCATTTTAGATCCCTGAAAATGGCTGATGAG CTCCACTTAGCGCTCTTGGTTCTCGACATTTCAATCAGTGTGCTCTGATGGTCTTCAGGAGAATAAACTA CCGGTAGACAATCCCAACGGAGGCTATATATTGCCTACATAGGGATCCATTCCAGGGCACATTTTCCATT GAAAGACTTACATGATGTAACCCTGAACTTTACCTTCAAACTACAAATAGTTTTGTTAAGCCATTGCCTG CTGGAATCTGGTGGCTCATGTATCAAGCCCATGGGAATAAGAAAGTCAGTAGTCTACAGATTTTGATTAC TTTTATTTCCTTTATTTACTTATTCCTTGACACTAACCTTGGGTCACATTCTCCCTATAAATTTACCAAA GCATATTCTCATTTCATACGTACAAATATTTTGCCAATTTTTTTTTTACAAATTTTGAATATATATTTTG ATGGATCACAATTTTTTTGTTTATGTAATTCAGTAAATACATGCATTTCTTATTATATCATAGCTATATT CTTTGGGTCATAGTGCCCATTTTGGAAATATTTTGGTTGCCACCGCCCTGTGTGGTAAACCACCACAGAT AGGCACTTTCATAAATGTTTCATCACAAGGTGTAAATGGAAATTCTTCTCTGTCATGAAAAAAATAGTTA TCACCTTTAAAATTAGCATATCAGTCATGGAGATATGTGAATTTGTCCCAATTTCATGGTTCAAGCACTT TTAATAGGCCATTTTCGTAATGTAATCAAATTTAATGCACAAATCTTTGTTGAGTGCCTAGTTACAAATT ATTTCATTAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds