Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT119452.1 TSA: Strongylocentrotus purpuratus WHL22.55476.0 mRNA sequence GAAGATTTCTAGAGAAGCATGGGGAATCTTTTGAAACCATTGTATTGACGATGATGGGAGTTGACGAGCA CCTATACAGTGAGTTGCTGCCATTATACTTTCCGAGGACAGAGCTGGAGGAGCAGTGGGCTATTGACCTG GTCCCAGAGAACATCGGCAATGAGGATGGAGAGCCGGTGATTGCAGAGAGGAAGATACGCATCATGGGCG GTCCCACAAGAAAACAATCAGAGGAGGAGGAGGCCCATGAGCAGACCCTTGCCGATGAGCTGAGGGGAGA CAGGATCTCTAACGGAGCTCCGTACGAGGTGGAGCCCGAGCAGGACGAGGAGGAGCTGGAGATCGGCAAG CACGCCTTTACTGCCATGGAGAAGAATCCAGACTCTGTGAAGAGGCAGAATCAGAGGGAGAAGAGATCGG TCATACCGGCAGAAGCGGAACAGAGGCAGAGATACGAAAGGTTGCTAAGAAGAGCTCGTCAGGAAGACTT GTCCGACATTGCAGCTCATCGATGCATCTACGCCACAGGGCATGACATCCATGGGCGACCAATCATCGCC TTTGTTGCAAGAAATTTCCCCGCGCATTCCATCGACTTAAACAAGGTACTACTCTATGTCATCCACCTAC TCGACTCCATAGTCAACCAGGACTACGTCGTCGTCTACTTCCACACGATGAGCTCTGCCGACAACCAGCC TGAACTGAGCTGGTTGAAGGACGTCTATCACATGGTTGATAATAGATATAGGAAGAACTTGAGAGCCATG TACATCGTCCATCCTACTTTCTGGTCAAAGCTTGTGACCTGGTACTTCACAACATTCACAGCGTCCAGCA TCAAGAGTAAGGTCCACTCGACAGGAGCCGTCCATTACCTCTACAAAACCATACACCCGGACCAACTGGA CATTCCTCCCTTTGTGATCGAACATGATATGAAGGTGAATGGTCCTAACTACAGGGACATAGACGAAAGA GACGGAAGCGGAAGTCTCTGATTGGACGAAATCATCAAGATTCCTCCAACATCTAAAAAAATCAGTACTG TTCCGACCTGATGAAGTGACTTGATAATGGGCCTTTTCACACACGATGCAGGAAAACCTTGGCAGTTTAC CACTGTCTTTTTTGTGTGTAAATGAATATTGAGAAGGGATTAGAAACTATATTGTAGTTTTCTGTGCCCA ACACAGGTCCCCTTCGTACTGTCACTATCTCACCATCTGTGTTGTGAGGTACAGAAATGTGAGGTGTATT GATAGGCATGCATCATTACAGCAACAAAAATACACTAGTTTACGTCAAATGTAAGTGAACGGGCCAGAGT GTCTTTCTTGTTCTCTTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCC TTCTTCTTCAACTTCTCCTTGTCCTTCACCATCTTCTTTTTCATCTTCTCCTTCCTTGTATTCTCCATTT CCTTCTCCTTCTGCTTTTCCTCCTCCTTCTTCTCCTTCTTTTTCTTCTTCTTCTTCCTCTTCTTCATCTT CTCCTTCCTTCCTTCTCCTTTTGCTTCTCCTTCTACTTCTTCTTTTGCTTCTTCTTTTTCTTCATCTTCC TCACCTCCTCCTTCCTTTTCTTCTCCTTTTCAATCTCCTCCTTCTGCTTCTCCTCCTTCTTCTCCTTCTT CTATTTCTTCATCTTCTTCTTCATCTTTTTCCTTTTCTTCTCCTTCTCCTTTTCTTCTCCTTCTCCTTCT CCTCCCCCTTCTTCTTTTTCTTCATCTTCTCCATCTTCTTCTCCTCCTCCTTCTTCTTCACCTTCTCCTA CTCTTTCTTCTTCTTTTTTTTCTTCTTCTTCTCCTTCTTCGTCTTCTTGCTATGTGTACAGGCCACCGTC TGGTGTATTCTTTGTGCCAGTACATGGTCACATCTGTTACAAAGGAGTGCTCAAATATTTCTATAATTGA GGATTACTAGTTTGTTTTGAAATTAGTCACAAGATGCATTTAACAATGAAAAGATTTGTTATGCAAGCCA ATATTAACTTTGTAGTTTCCTATCTCTTATTTACACTCTGTAGTTGCATGTCAATCGCGAACAAATTGAG ATCAATATTGACTGTCTATAAGACGGGGCCCAGTACTGTATGCCCTATGAAATTGCCAACACTTTGAGAG TCAAAAGGGCGTTACCGGTATTGAACTTGTATCACTTTACAATGTCAATGCCCTTATAGCTCTAAGCACA CAATTATCTTAAATCTACTTAAGTCTTCCAGAGATAAGTTTATATAAAGGTGATGGTAAGAGACTTCAAG TCTTGTAGATTCTATTTTTGTATGCAGTAGTAGAGTATGTGATGAATATATTAATATTGTGGTGAATATA TTCTTGATAAATATTAGATGATATAGAACTGCAGCAGTGAAAAAAAAACATGGAATAAATGGTTAGTCAT TTTGCTGCAGAAAGCTCCGAACGAGCTTTCCAATTAATGAAAGTGTTGTGAATCATTACAAAGAAATCTT ACTTGTACTAGAGTAAATCCATGAAGAACTCCTGTAAATGAAAAGGTTCTTCTACATTGATGGACAGACA GGGATTAGGGAATTACATTGTATTCTAACTATTAATACTTGAACAAATATTACAAAATTTTAGAGACTAA AAAATTTTAATTTCCCAAATACTTTATACTTGAAATATTGCTTCCAGGAAGTCCCTCCTCACTCATGATT GGCATGTATAAATTTAGCTAAGCAAAGCATTTCAAATTTTCTGTTACTTAAAGTACTTGTAGGTAATGCA GGCATTTCTCATCTGTGAGTACGTGTGGCCCATATTTATGCGAACGTTATAGTTCATGTTCTTGAACAGG ACCATGTTACATGAGGTGGAATTTACATTAATCTTGTAGTCTACTTTAACAGGAAAGTGAAATTCTGACC ACTGAATACTTCAAGCTTTTCACCCAACATTCAAGACTACACAAACGAGTACATTGCATATCTCTCAAAT GACATTGTATCCTCAAAAGACAACCTATTGATAAAATTATTGTCTAATTCCTAAAATAGTTTAGAAATTA TGAAAATAATTAAGGAATCAGACCTATAGTCACACAGTCCCATACACATCCTATCCTATGAAAATACAAC TTTAAATTCAATGGAAAGCTAAATGAATACAATAACTAATTTTAGTAGTGCATAAAAGCAAAACATTATT GTACATATATCAGTTGAGTTTTGGCATCCAATTTGTGAATCAATAGTATTTTCTGACTTTCAATTCCAAT TGATTATGCTAGTCATAAAGTGTATGTTTCACAACATGACCACATTTTTTCCTTTCTATATATTATGCAG TCTGTACTTCTCTGAAATAGATTTGTATCGGGAGTATAAGGGAGTTTACAGATAGCACATGGTACAAATG ACCCCAAATATCCACAGATCTTTTACACATGGAGAAGTTCCACTTTGAGCATCTTAGAATAATAACTGCC AAAGTCCTAGATGTGCTTCATGAATACCTTTTGTTTGCCCTCTTGAAAAGAATACTTCCACCTGCGATCT TAGAATGCACCGTTGGTGCGTAAATGAATAATGTTACATAACATGCGCAGATTGTATCTGTAAACTCCCT TATTTACAGAGAGCGGAATGTCTACTTATTTCAATGTATGGGTTTGAAACAAATTTAAAAAGTAATTAAA AAGTAGATTTCTGGGTGAAATAAAGTGCACTGTAGGTGTAGATAAATACTTATCAAAGTCCAATACTTGC TACCATTATTTCAATAATGTACTGATTTTTCTCTCTTCTATAACAATGTGCAATCATTTATGTGTATTAG TGTGTATCATGTCATAATGCAGCTATATTGTTGACTAGCATATCATTTTCTCATTGAAAAAATCCTTGTC TCCATCAAATGGCATGCTCATCCATCATTTGCACATCGGATCTGTTGTGTTCTGTTATACATGTATTTGT TATGTTTACAATTATGTTTACAATTGTGTACAGCCTGTTATGCATGAAGTTCAGAATTTTTAAACATTTG TTTTGTTGTTGTTTTAAAGACTTGCTTTCTGATAACATGATAAAATGTATTTACTCTGCGAGACTCTTTT GTACAAAGTTAAACTCAAATCACAGCAAGCATTATCAGATGGCTGTCAGATTGCTGTCCCCCGCAAACTT TGGCTACCGGTAGTCTTCATCACTATGGTTTGCAGGCATCCATCTCAAAAGGTCAATATAATAAGATTAT ATTGGCTTGGCTACCGGTAGTCTTCATCGCTATGGTTTGCAGGCATCCATCTCAAAAGGTCAATAAAATA AGATTACGCAGACCAGGGTCCCGTCTTATAAAGAGCTGCGATTGATCCAAATAAGTCGCTAGTCCTCCAA TCAATTGCAAGTTTGCAGTCTCCTGTATCTTATGAACAAAGTTGCGATTAATATCAACTCTTTATAACAC AACACAGGCCCCTGAAATGAAGGCTTAGTGGTACTGGAAGTATGATGGCTTAGTCGTAGAGGAATGGTCT CATGGACTGAGGGTCTCAGATTCAGTAATTAAGGCGTTAATCCTTGTTACCTAAACCCCCCAGAGAGGAC TTAAAGCTGTTGATCCCCTAGTTGCCTTAAACTTACAATTATTTAGTGACCACCTGTCTACAAAGACCAC ATTTTTTGTTTCCCTTGAAAATGGTTTCACATTGAAACGTGTACTAAAGGAACCTGTCTACAAAGACCAC CTGTCTATAAAGACCACTTTTTTTGTGTTTCCTTTAGGCGGTCGCTATAGACAGGTTTGACTGTACATGC TTTCTTAGCAGTCGCGTAATAAAACAAACCAACAATTTTCATCAACCCTACCAATCAGAATCTTCCTCCA ATGATTTTTGTAACCTTTGACCTTGCCAATGCATAGTGTAAAAAGCAATAATACATCGGACATCCTAGTA TATCTGCAGCTTTTGCAGGTGGTGTATCGTGTAGAAAGATTTATAGGAAGTTATGGGAAAATCATGATGT GACTGTTGTTGAATTAATAAATAAAATATTTAATTATCAGATTTATATTACATGTATATCATGATTTATT GAACTTTTGTATTATATCATGATTTAATTGAATCTTTGAAAACTATCTTTGTGCTACATGTTTCTGAGAT TTATACAGATATCTTGTTATCTAATAAAAAAAGAGATTAACTCATATTAAAACAGAGGTTCAACAAATGG ATGAGTTCTTGACTTTATTGCATTTCGAAATCAGTGCTGACTATGTACATGTATGATGTCTCAGTTAGAT GGTTAAACAAGGGATATGTGAGTTCCTAACTTTGAATGTTAAAGGAAAATAAAGCAGAAAAATCAAAGAA GTAGACTGGTGAAAGTTTGAATGAAATCGGACAAAAATAAGGCAGTTGTAATCACTATACGTACAAGCAT TCCAAATTGACTGAATTAGAAACACAAAGTGACTAAAATTGTCAATTTTTCATTATGTATGTCTCATGAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds