Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT097285.1 TSA: Strongylocentrotus purpuratus WHL22.459317.0 mRNA sequence AACATCTTCCTGCTTTCTGATGGTCATGTGAAGCTAGGAGACTTTGGAGCTGCTATCAAACTCAAGACGC ACAGCACCATGCATGGTGAAGTCAATACCACCATGGGAACGGCTGCTTACATGGCTCCCGAGGTGATCAA CCAGACAGGGAAAGATAAGCCTGGCTATGGCAGGCAAGCTGATATCTGGAGTCTGGGATGTGTAGTCATT GAGATGGTTACGGGCAAGAGACCATGGCATGACTACGACCACGAGTTCACTATCATGTACAAGGTGGGCG AGGGAGCTGTTCCACATATACCGGACGCGATGAATCCCGAGGGGAAGGAGTTCCTGTCCAATTGTCTGAA GCACGACTGTACCAAACGTTGGACGGCCAACAAACTACTGGACCACCCGTTTCTTAAGGTCGCTGGTGAT ATTATCGAAGAAGAGACTGAACACTAGCAAGCCACACCCTTCATCCTCATCCAGAGTTAAACATTATTAG GAGGCACAGATACCGGTAGTAGCAACAATTGGTTTGAATTCTAAGTCAATGCTAATGACTGAGGAGGGAA GGGATGAAGAGAGAAGGTGAGACTAGTTATGAGATTTCATAAGTATTTGTTAACTGTGTGAGGAAGGATC CTTGAAGAATTGCACCAATATCTGTGTATTTTGAAGGTTTCATATGCAATTTACATTGCTTCTTCAAAAA GCATGGAATAAAGAGAAAAGACGAGACTGGTAAAAATATTTCATAAGTAGTGTTTTTATGTATGTTAGGG AAGTATCCTAGAAGAATTGTTGACAATCTGTGTTTTGTTTAAAAATGTAATGTGCAATACAATATAAGAG TCCATGTTTTACGCCATCGAGAATTAAGATATAAGAGAACCCCATGAAGGCTTGAAATCTGATTACTCTG AATTAATACAAAATAATGAGTCATGTGCACTAAATTTGTTGGTGTTTGGATTTTTACATGTACAGTGGTG AATGTAGCCATTTCAGAACAGTTGTGCCAAATATCTGTTCATTTTAATGTATGAAAAGTAGTTGATGTTA AATTTAAAGGAATGTTCATATCACATTTACAAGTTAGCCTTATCTAAAGAAAAAATTCAAGCTACTTTTA GCGTAATTGTACATTGTAGAGATTGTAAAACTGTTTACAACCATCACGATCAAACCTTGCTTTGTAAAAT ATTATTAAACAAGGGTGCTTTGTACATTGCCATTCTCTTTACTTGATTATGTGGGAGACCTGTATAATTC TAGACCTAAGGTATGAAATAGCATCTCTTCTTTCTCCTTTTAAAGTAGTTCTGTGAGTAGAATTGAAACT TCCATTAACCCCTCCTAAAAAACGTTTTTTTTTTTCTTTTGTTCCCAGAATTCCTTTTTGTGTAAATTCA AGGAAAAGAGTTATGTATTTTTAAATGTAAAAGATTTATTTTTCTATAAGCAATTTTTTACAGACTTAAG ATCAACATAGAAATAACTAGGTACTTAAAACCGGTCAATTGTTGAATATTTTGATATTCTAATTATTAAG CTAAAACTGAATTAGGTGTTTTGTATTTACTGAAATCAAATGCTTGTAAAATGATCCCTCTTTAAAAGGA AGTTAATTACCAGGATTGAGAAAGTGATCTTGAAGTTGGAGTATTATGGCACTGTAAATATGTGACAACA TAATGCGGAACATACATGCATGTAGCACACAATCAGTATTATAAGTACATTTGTATCACAGAACAAGGGT TTGATTCAAAATTATACAAGGTAAAGATCAAGTTCTTGGACTGAAAAGGCTTAGAGAATAATTTCATTTG TCTGGAGCCAGTAGGGCATTTACTCTGTAAAATGATGAATTAACACCCTTCTGCCTTTCAAACAAATAAT ACCATGTTCACTACCACATTAACAGTAGATATATATCCATGGAATCCCCCCCAAAAAAATTGAAATTGAC AATGGAAGATGTTTGATAATGCATTATTGTGAGTGTGAATATGACTCTCTAAGTCATTTTTGTGAATGTT CATGTATCAGTAGTCACTGTGTGTTTATAAACACACTAGTCCACAATGTGAATTGAATATAAATTTACTA TTAAATGTTCTTTCACTACTATTGTATGATGTAGGATAAAGAAGCTGCTTTTGAAATAGATATATCTGAC AGACCGGTTTACTAACACATTCAAATGTATGGATGTTTCTTTCCTGGGGACCTAGTGACGAGGTATTCCA TTAACCTCTTATTAATGAGTGTACCACAATGCTTGCAATCCAATCTGCATGCATTATTTGTTGCTATGTC AGGCAAGTCTCGGGCAAACCGTGAGGATGTCAAGAACAACATTTGTTTACAAAGTATGCATGAACTTTGG ATATGATAGCAAACCGGTCTATTCCGGATTTAAGTTGCTGCCTTAATGACAATCATATCAGTTGACTTTA TTAGTCTACATGATCTGAATTAGCCCCAAGGGCAAAGTACAAAGTTCAATGACCCTAATAGAAACAAACC AGTCTGGACAACTAGTTATGGTATGGCAAGATTTGGTTGCATGAAGACTAAGGACTTGATAATAATGTGG AATTGTAATAGGCGATTTCTTTAATGTATTCAATTTGGAATTTAGTGTTTCTTCTCTACAGAATGGTCAT GTTTGAGCTACAAATTACCTCAAAAAGTTTATGCTTGTTGGGTGTTGCAGAGAGAAATTGAATTGAATTC TGAATTTTTGAGCTTGTAAGCATTAAGATTCATGACGAATATTTACCTACATGTATTTATGCAAGAAAAA AATATGCACGTGTATACAGTGCGTCCCGGAATAACAAAACCTGAAAACAAACATTTATTGTTCTGTTTTT CTTCTTCTTAGATGCACAGTATATATGCTATTGTGCTTCAGTCATTACACCTATCAAAAACAGCTTGGAA TAGTGTAATGTCTGCCTGGCTGGAATGCTCCCCAGGGAGTGGAGAATGTGCATACATTGTGTGAGGGCAA GCCTGAATCCGATGACCGGGGTAATAATATATCTGTAAAGCGCTTACAGACATCATTGATGTATTAAACG CTATATAAAAGCGGAATATTATTATTATTATTAGACACAACATTATTTTAATCTATATTGCACTTAACAT ATTTGAAATTACATAAATCTCTTCAGCTGCCCAAGAAAATTGTGTTTTGGCAATGACTGTTTCAAATGTC ATCACTGTTGGTACAAACACAAAACCATTATGCCACTCTGTGCCTCGTTACTGCCCTGTTTCAGCTAGAT AAGAAAATTTGGAATGAATGTGAATGTTTTAAACTTTTGCCACCAAAATTGTCTGCCTTCAATAAAAAAT GAATTTATGTTTTATTAGGTTGAAGACAGAAATGCTCTCAAAAATTTGTGAGGTAAACTTTGATAAACTG TAAGGATGCTCATTAATAGCATTTCTTCATATTTGATTACTTACATATCTGACACATGCTGCCTTCAAAG ATATTAAACTGAGCTGCAAAAGATTGTTTAGCACAGCAGAATATACAATATGTAAGAAGAAGTTGGGAGC TACATACTACATATTTGTTTGCATAGTTTGAGAGTATACGACACAGAGATTTATTCTGCTAAGTAAGCAA AGTAAGTGAATGTACACAATTTGTATATTACTTGTATCATAGAAAATTGATGACTCATCTTGACCTTTGA ACCTAGTATCACATAACCTGTCTTAGTGGCCACCTCTCTATAAAGACCACCTGTCTATAGTGGCCATGTA TTTTGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds