Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT102671.1 TSA: Strongylocentrotus purpuratus WHL22.60681.0 mRNA sequence CGCAGAGCTCTGTCATTGGTCGGTCGTTTATTGGCTACACTGTTTCCCTGCAAGCTTGCCAACCCCACCG CGGCTCCTCAGTCTGTAACCTTCTTATTTATTACAAACAGAGCTGGTATATGATATTCGCCGTTATAATG CATCTTCTCTTGCTGTTTCCAGTTGGAATTGGAGTTCTACGCAACTGAGCTTGGATGGGAAGAAACTATT CGGTTGGAATGCTGGAGACTATGTATCGACTGTCCGAAATGACTTCATGATCTACCGAGGCTCTATCCAC CTCTCTCTTTAATAACAGCAAAAAGCCAACGCACTTTCGAGGAGTAACTATTATTGACTTGTATCATATA CCGAATGGAGTAATATTGACCCTATAATGTTCCTCAACGTTTGTCGAGTCGAAAACGGAGCTGCATATGA TTAAACACGAGATGAGACTGTGTTATATTGCATGGTTAACGGTTTACACGTATCGTTTACATTTCATTCA AGTCGGTGGCTCTTGATGTTCCCATTTCAACGAGCTTGTTGTGAATGCTTGAGCGGATTACGTTGGATAG AAAAAAAGCCGACAGCTTAATTCATCTCGCCATTCGAACAGTGTGTGCGCGACAAGCAAACCAGACAGAC GTGTGATCACAAATCGGCGCTAAAACTAATTTCAAGTTTTCTCTTCTCTATTTCAAACTCGACTTGATAT TGCGTGCTGTGGGTGGAGAAGGAGGAGGAGGAGGAGGAGGATTCTTCTGATGCAGGCCAGGATTTGTGAG CGTCGAGACCTCGTAATAAGGAACACATGTGAAATAGGAGCGGGATCAACTGTAAAGTGATACCCCGAGT GGCGTGTAGAGAGCTTTCAAGGTGAAACCCCAATTTGAGGAAACGTAAGACAGACATGAGAGACTTGAGT ATGTAGCTTTATATTATACCAACGATTGTGAATTCAGCTTGAAGTAACTTATCGTCGCGGTGAATGAACT GAGATTGATTATAAACGCAGCTAAAGTCATCTCACATTGCATGGAGAACGATTTCGAATTCTGACGGGGG ATATTTGAAGGTTTGGTGAGGAAATCAATCGGTTGTTATGGCAACGTGGAGCCTTATCCTTCGTGTTTTC TTGATGTGGGGTTGGTGTTGTGGCAGCTATGGGCTTGGTGTGCGTCATGGAAACACACAGGGACATTGCG AAAGGATCACCATTGATTTTTGTCAAGGAATCGGGTATAACATGACGAAGATGCCCAATCTGTTCGGACA CGTGACGCAGAGTGAAGCGGCGCCGAGCATTCACGAGTTCCATCCCCTGGTCGTCGTCGGATGCGCCGAG CATCTTCGACTGTTCCTTTGCTCGATGTACGCGCCGATGTGCTCCGAGCACATTGATATCCGCATCCCAT CCTGTCAGAGCATGTGTGACGATGTGAGACGGAAGTGTGAGCCGGTGATGGCCCGTTTCAGTTTCAGCTG GCCTGAGAGTATGAACTGTGACAAGCTACCTCGAGGAAAAGACCTGTGCATGGTCGCCCCCGACACCGCC GATGTCGGAGACACCATCCCGACCTACGAACCCAACTTCAATTTCGGAGGGCCTGATGATAACATCCCAT CCGGCCCATCCGCTGGAGATGGACAGAGGGAATCGAATGCATCGTCATCAGCGCCACCAACTTGCACCAA TCCTCAGAAGTTCGTCTTCGTCTCGCAGACGAACTCTTGTGCGCCGAGGTGCGATGTCGACGTGTACTTC CAGCGATCCGACAAGGAATTCACGGAGATGTGGATGGGTGTCTGGGCCATCCTCTGCTTCGTTTGTACCT CCATCACCGTGCTCACCTTCCTTATCGATCGAGGTCGTTTTAAATACCCAGAAAGACCCATCATCTTCTT ATCAATGTGTTATAATATCTATTCTATTACCTACATTGTTCGTCTCATTGTGGGACCACAGGCCGTTGCT TGCGAGAAGACTTCAAGTGGTGTCCCATATTTGATTCAAGAAGGACTAGACAGCACCGGATGCACCATCG TATTCCTAGTTCAGTACTACTTCTTCATGGCGTCGTCGATTTGGTGGGTGATCCTGACGTTGACGTGGTT CCTGGCAGCGGGAATGAAATGGGGCTATGAAGCGATAGCGGCTTATAGTAGCTACTACCACGTCGTGGCA TGGGCCTTACCAGCTTTAAAGGCCGTCATCGCCCTCTTCAAACGTCGACTCGACGCAGACGAACTCACAG GAATGTGTTATATTGGGAACCACGATCCTGACGTTCTCACCTACTACGTTCTCGTCCCGCTCTTTATTTA TTTCGCTATTGGGACTCTTTTTATTCTTGCGGGATTTTTCTACTTATTTAGGATTCGCAAAGTCATGAAA AATGGCGGCACCAATATTGACAAGTTGGAGAGGCTAATGGTTCGCATTGGTATCTTTTCAGTACTCTACA CAGTGCCTGCCACTGCAGTAATTGCTTGCTATTTCTACCAGAGATCGAACATGGAATACTGGAGGATTGT AGCGGAGCACGCCCCATGTCGACCCCTGCCCCCAGAACAAGGTGGGGGTTGCGCCCCCATGGATTATTCC ATCCCGTCCGTCCCTGTGTTATCAGTGAAACTCTTCATGTTACTCGTCGTGGGTATCACGAGTGGCATGT GGATTTGGAGTTCAAAAACCGTGCAATCGTGGCAGAAATGGCTTGGCGGATGTGCCCTTTTTTCACCAGC ACAAAAATCGTCATTTCAACAGCAGCAGTTAAAGCAGCAGCAGCAGCAGCAGCAGTTTCCAAATGGGGGA ACGCCAAACAAAGAAAACAGGCCCACGACGCCCCGGGGGAAGTACCCAACAATAAATGGCAACAACAGAA GCACGGGGATCGTTTACAGCTCTGTGAACGCAGGCAGCGCCATTGTATGACGCTTGAAAGGGATACGCAC TCCAAAGAGTTTTTCCTTCATTTTTAAAGAGAGATTAAATGTATATTGTGTTCGCAAACGGCTATTAAAC CATCGAGTGGTTTTTCTTACGACAACGGCCACATGTTATTATTCCCGTTGTCGACCCTTCGTGTAAATCT AAAAAAAGACATCTCGTTTTTATAGCTTCTTGTAATGTGATTACATTGAGACTGTATTATAGGATGCATT TTGTACTTATTTGATCTGCATGTAAAATGGGACAGTTTTGTTGTCTGAAATGATTCTTTATACGTTGCAA ATTGTGTTTTAAGAATACGATGTCAAATTATGCAGATAGATTATTGAGTTTGCCAATGAAGTGAGGTCTA CTTTAGCTAAATTAAAATAGTAATGGTCTACTATGTTTGTTGAGGTTGCTAGAATTTTCATTTTGGAAAA TGGCATTCGAATAGCATTCAAGCAAGGTTACAATCTGTTTTCGTTTTATTATTGCCTATATTTCCCAAAT TCACACCCAGTTCCTTTTATTTTTGTATTGTGAGATTCATGTCTACCGTTTTCTTTAAAACACTTGTTAC TATTTTTTGGGATTGCTCATATTTTAAATTGGGAATCGGGAAATGAAAGTATACACGATATACTTTTTCC TCTCACAGGGTGTATTTTTTGTTCAACACTCCCAAATCCACGACACCACCTTTAATTTCCCCCATTTTTG TTTTCTTCATTTGAAGTGAGGCATTGGACTTGGTCTTCGAATCATCCTCCTAATCCTCTGCATCCAATCA GAGTTATCAAATCGATTCCAGGGCTGAAAGAACTCACTGAAAGCTGGCCGAATGAATTTCATACCTCACT GACCCCCTCTCCCTGTTCACGCCTTAATTGATCCCCACAGCGTAAACCCCAATACCACTTGACAATGACA TTGGTATAACCGGATTTCACACTTGGGCCACCTGTATACGTTTACAACGCCACTCCAACGTTTTCTCCCC GCTGTGATTTTTATCAAAGTGGGTCCTTTCAGGAGCAATGGCGTACTCACTTTGGGTTTTCTTGTTTATA ATTCTCTCAATTTCCCCTTAACCCCCACGTCTTCATTTTCTTTCCTTGTTGCCATTTAATATCCAAGCCT TATGGATTTTCCACTCAAGTAGATGCAAAATAATTTGTGAAAAGGATTTTGGAATCAAACCTGAAGCGCC TTGTCAACCACCAGCACTGATTGAATAAGAAACGATTGGATAGGCTCTGACCCTTTTCCTTTTATCAAGA ATATTTCTCCTCCTGGTCGTTCGTTATATGTACAACAAAAAAGTGCTGGGGGTATCATTCAATTAATATC TCACACTTCTCTCACAGTATTTCATTCTATTCATTGGCAGGAAAATAAAGGTGCATTACACAAACATAGT TCGACTAGCTAATCAATTCAAATAGACTATCTGCTTATTAAACATTGATCAGTTAGTTCGGTCACTTTCG ATGGGCCCCCTGCCGCCCTCACAAAACTACAAAGCATCCGCCGATAACAAATCAATAGACCATTGGCATG TATTTCCATTAGCTACATTACACTCGAGTCATGGGGCGGCTGTCTTTGTATATCAAATGAAAAGAACCGA TAACGAATAATAAATGACACGTTATTTGTTCGACTGCAGCCCCTATCAAAACACGGCTGGTATTGAAATC AAATTTGGCAAAAATTGTCATATTTGATGTCAGCATCGTTGCCATGGTGCCCATGAATGTTTCAGTGTTG TTGGTTTTTGCCGCTTTGTTGTAATGGAAAGCGGAAATTACCTATATAATTCAAATTTAATTGACATTAT TATCTCCCAGGCAAAAATATTACAATGTTATTAATCGGTTCCCATCACAGTATTTATTTTAAAGAACTGT AGAGCTTCATTATCCTCACCCACCAATGTTCATTATTAATGAATTGTGAATGTCATTTATTTTGAATATA CAAAGTTTACTTCGTTGCCTTCATACATCCCTGAATATAGATTGAAATTGAATATGGTTCATTATACTGC TTTCGATATAATCCTGTTTATATACTCCTAAATTCAACAATCGCATGCGAAAATTATGAATACTCTGTCC CAATCTAAAGAAACGAAGCAAGATTTTAATCTTTTTTAAAAGTCGTCGACCTGCATACAAAAGATACAGA GTCATACAAATCTAATCGTCAACTTGATTTGCAATAATTGTGCTAGTGTACAATGATCCGTACCACAATA ATTTAATACACGTATCTGTGTGGGTCGTGTCCAAGAAGAAGAAAAGTAATGTGTTCGAAATACTGCGATA TATATGTGAAATAATAATGCATACATATATGTGAAATAATAATGCATAAATATAGGTAACGATTTTCATT CAGCCCTTACTGATCCGAGTATTTAATACGAATTTTTGGAATACAATTGCCCTTTACGTGATCTGTAATT GCAACCCCAAGGTCTTAGGTTTTCACAAATTCACAGCATGATCTTAAACCTTTATAGAGATTGATTCATG AACTAATTTGGGAGAGCAATCAACCAAATGAATCTCCATAATTGATATGAGCTTTTTCTGATTGAGCTGG GTATAATTTATATCGATGGATATATATAATTTACGAACACGAATCGTGCTCTTCTCAATCATGATCCAAG CGTCTCTGTAACTTGTTCATTAGTAAAACGCGTTATTATTCAAAATATATAACATTACAAATGATATGTT TTATTGTGAGTGGAAATGTGCATGGATGGTGGTGAATTCCGTTGCTAAGTAGATATATATACTTAAAATA AAACACCGACGAGGAGTCGGACTTTGAAGGTTAAAACATTGTTATTAGACCGGCAAGAGAATGTTATTCA TGTAAACTCTATACCAATGGCGTATAAAGTATACAATGGGGTCGGCTAAGGCACCCCCCCCCCCTCATTT TCGAAGGCCGGGGAAAAAAAACCAAAAGCAACAATAAACATTTTCCAAGTGACTCTGTACGGAAAGGGGG TACATCATCCCACCCTTCTCCCCCCCCCCCCTCCCCACACCCCATGACACTTCCCCCTATTTCTAGATAC GTCTGCTCGATGGTGTAAATCAATGAGCCCCTGCCGCCCCTGTCTCATGTCACGTTTTTGGTTATTTCTG GATACCCCTGCTCGATGGTTAATTGGTTATATTAAACATTTAAAAACGATTGAAAATTTGATTGCTTTAA AATGTTACAATCTCATTACCAATCGCAATACGATGTTGGTTTCAAATGTTGTAATTCATTAAACTACAGT ATATGTATCCAATAATTTTGTATTAAATGAATGCGATGGGCTGTTTTTAATTCTCAACAATAGTAGCCGA ACCCATTGAACTAACGAGCAGCCGTCATGGTTTAGTCTCGAAAATTATTTGTCATGTACATGTATTTATG TTTGTACTGGTGTGCGCTACATTTGCTTGTTGATACGGTTTTTTTCACTGTTTTATCACGCTCTTTGTGA CGATTTACAAGTGCTTGTTTTTAAACGTTGGCTACATAATCTAGTCATCCAAAACAATGCAAACACATCC TTATCTTTATTTCACCTTTGTCAGAACCTCTATCGCAGTGTAATTGCTCGCCCTTTGGAACAAGCCCCTT TGAACAGCCATTTTCTCGAATGCATTTATCAAGCTTCGATTCTTCTTTATTGCCCCGACTGGCAGAAATG ACAAGGTTAAATGAAAAAACCGATTTAGAAGTCATTTCTTGCACAAAAGCCGCCCCTGCATTCAAATGCA TATTGGGTCGACCGACACACTGTACTATATTGCACACAGTATAAGGTGCCGCTTAACAGGTCTGCGACTG CATGCAGTATCACTGTGCACAAAAAGCAACTATTAAGCCTTATGTGACTGAATCAATATTTCGAGTTTGA TTTTGACTTGGAAATGCATTTGAATTTTTTAAATCCACATTAATATGGACTTGTTTTAAACCTAATCCAA TTACATTTTGCTTGAGCTGGTGCCAGGAAATTATCTTATTTTTGCTCATTGTTATTAACGGTTGAAAACT GTGTTTCTCGAATGTCAAACATACTTTTACAGAATAATACAATACATGTGGTTACTTGAAGTGAAATGAA CCAAATGACAGATATTTGTTGCCATGACATGATACCTTGTTGTTTTTTAAATTGGCTCGTTATAGATGAC ATGAGAATTCAAAATACATGTATACATTATACAAGTGATAACTACTCTGATCTTGTTTTTTGTTGCAAAC GATACATGTATTTATTTTATGTATTTAGTTTGTGTTGACCTTTGATAAAGTAATCATCAAACCAATGTAA TTTATCTCACAATGCTGGCATTCCATTCACAATACATGCTTAAATATCACAACAAAGCTAACTGTTTGTA ATTGTGTCCATTTATTTTTTTGTCAGTAATTAAGGGATTGATGTGTGAAGCCGTGTCTCAATCACCGTTT AAATTTCGAGGACAACCTGAAAAAAGTTGATAGCCATATTTTTCATTATTCCTTTATGGCTTGTTATAAT GACACTCCCAATGTGGTTTTCAGATTTCGGTTTTAAAGAGAAGATCGAGTTCTTACAAATGTGAAAAATA ATTATTCAGCTTTTGCATTATTTTTTTAATTCTTATGTGAAAGATTGTCATTTAGCAATGTCATGTGAAA ACTACTGCTCTTGAAATCTCATCATATTTTGAAATAGCGTAAAACTTTTGACCAAATTCCAATGTCATAT GTATGTGTGTAGTCCTATAAACACATTTCTTTGCGGTATCTGGCATTGTATGTTGTATTTAGCGGCTTTA GCCCGGTTGAGTCTATTTCTGATCATTTTGATGATTCCAAAGGCTCACAATATATGATTATTCCTATATT CTACATAAAAAATAAACCTTTCTTATTTCGCAAGACAATCGCATGACTAAGAATTTGATTTACTCAACTC TATCTTTAACTTAGGCCCACTGCACCCCCCCCCCCCCCTCCGTTGTCTTCTTCGTTCACCCCTTAATTTA CCGCTGGCATTCAGAACAGTTTTATGACATCCAAAAGTGCAAGTTCGAACAGTTATCATGGTCATGATAT TTTAATGGTTAAAGACCTAGAAACAGCCCCATTCCAGTTTTGATAATGATCTTTGTTCGTCATACGGTTT TACAATAACTCTAATGTTTGCATACCCCATCATTTTTTATAGCTTTAGGAATTAAAATGATGGAAATATC GTTTATAACATTACATGTTTTGACCTCACGTAAACGACATAATGGTGGAAAACAAATTATGACAAAAACC AAATATCTGGGACGGGATTCTATAAAAACGAGCGTTTATAGATTATGATCACTGCAAAGACATAAAAACG ATCAGACATTTTCAGGCTTTGATGTACATGTATTATTTCATGTCGACGTAGGCATATGTATTGCTGTGTT GTTTAGCTGCAGAAGCAGACGTGGAGAGTATGATATGACATCATGTTTTTGTACGACAAAGTAGTGTAAG ATAGGCGCCACTCTTATAAAACGATGATCAGGGAATTTGATTCAAAAAGTGCATCAGCACCAGTACGTCA CCACATCCTAAAATAAAGTACAGATTACCCCTACCACAACATCCCATCACATCTCTCTCTCTCTCTCTCT CCCTCTCTCTCTCTCCCTTCCTTCCTCTTCCCTTCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTC TCTTCCCCACGCTCAATCAATCACTCATTTCTCTTCCTATTCATTTTCCATCATCTATCTCTATCTTCCC CGCTCCCTTGTCCACCTCTCTTCCCTCCTCTCCATTCTCGCCACCCCTTCTTTTCTCTCTTTTGCATCAC TTTTTTCCTTCTCTCTCTCTCTCTCTCCCATATCAATCTTTCACTCTCTCCTCCCCCTCTCTCTTTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTTCTCTTTTCTCCCTATACTTTCATCCAGGCGATCGTGAT CAGTTTGGGAGGCTACTTGGGTCTTGTCATTACCCATAATTGTTTCCGTTGATCATTTGATTATATCTTA ATTTTGGCAACTCTTATGTTATTGTAACTCATCAGTGTACGAGAGAAGAACCAACCACTCTCCCCTCTCC ACCCGGCTGACTTTAAGCGCAGTTACCATGGTTACCACACTTTAATAAAACATGCATGTTTCTTCTATCC TACATTTGGGCACATTTGCGTATTGGTTTGCAGAGTGCAAGAGGACGAGATGAAATTCGTATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds