Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_779741.5 PREDICTED: Strongylocentrotus purpuratus uncharacterized protein YMR196W (LOC579636), mRNA ACGTCATATACGTGATTAAAGCTAGCTAGCTAGCTAGCCTAGTACCTTGATGATACGTATACCAAGAATC ACATCACAAGCTCCAGTGCAGTGTGTTGGAGCAAGATGTCAGAACACCTTCGTCTTAACGAAGCAGAGGA GAGAGTAAAGGATGGTAATTGGAAAAGATGGGGCCCCTATCTATCAGAACGTCAGTGGGGAACTGTCCGC GAGGACTATTCTACTGACGGATCGTGCTGGGAATATTTTCCTCACGACCATGCCCGATCCCGTGCCTACA GATGGGGCGAAGATGGATTGCTTGGTATTACAGACAGAGAATGTAGGCTTTGTTTTGCTCTGTCTCTCTG GAATGGTAAAGATCCCATCTTGAAAGAAAGACTCTATGGTCTCACAGGTCCTGAAGGTAACCATGGTGAA GACTGCAAGGAGTGTTACTACTATCTTGACTCTTCTCCCACCCATAGCTACATGAAGGCGCTCTATAAGT ACCCTCAGGGGGAATACCCATATGCTGATCTTGCAGGAGAGGCCAAGAAAAGAAGTGTCCAGGATCCAGA GTATGAACTAGAAGATACAGGTGTATTCAACGAGAGTAAGTACTGGGACGTAGTTGCCGAGTATGCGAAG AACACACCAAACGACATGCTGAGTCGTATCACGGTATACAACCGTGGTCCTGAGACTGCGACCATCCATG TGCTACCCACACTGTGGTATCGTAATACATGGATATGGGGCTGTTCACACGAGGGCTGTACCATGAAACC TAAAATGACGCTAATGAAGAACGGCAAGACGTTGTGCTCACACGAAACACTAGGCAAGTTTGTATTCGTG TATGATGTGGGACCAGATGGAGAGAAGCCAGAGATACTCTTCACAGAAAACGAGACCAACATGAAGAAAC TCTACGATGTAGAACATTACACAACCTTTGCCAAAGATGGCTTCAATGCATACGTTATAGATGGTGTAAA AGAAGCAGTAGATGTGCGTTGTCGTGGAACCAAGTGTGCCCCTCACTATGTACTAGAGGTACCTGCAGGA GAGAAAGCTGTTGTACGGAGCAGGTTCTTTGCAGAGAGTGAGGATCCTGGGACATACTTTGGAGAGGAGG CCTTTGATGCTGTGTTTGAGGCCAGAATCAAAGAGACTGATCAGTTTTATAATCAGGTCATTCCAGCCAA CTGCAATCCAGAAGAGCGTAGCATGGCCCGTCAGTGTTATGGAGGTCTGCTATGGAGCAAGCAGTTCTAT CATTACATCGTAGAGAGCTGGTTAGGAGGAGACAAAGCCACACCTAACCCACCGGAGAGTAGAAAGAGCG GTAGAAATGTGGAATGGAAACATCTATTCAACAGAGATATCATCTCCATGCCAGACAAGTGGGAATATCC CTGGTATGCATCATGGGACCTTGCATTTCACATGATCCCGTTTGCCAAGATAGATCCATTCTTTGCCAAG GAACAACTTCTGCTCTTCCTCAGAGAATGGTATATGGCTCCAAATGGTCAGATACCAGCATATGAATTCC AGTTTAGTGATGTAAACCCACCGGTGCATGCTTGGGCAGTTTTCAGGGTCTTCAAGATGACGGGGGTCAG AGGTCAGAGGGATAGACTCTTCCTAGCTAGGTGTTTCCAGAAACTCCTCATCAACTTTACATGGTGGGTG AATCGTAAGGATCCTGATGGTAAGAATATATTCTCTGGAGGTTTCCTAGGTCTTGATAACATTGGAGTCT TTGACAGGTCACGACCTCTACCAACAGGAGGTCATTTGGAACAGGCCGATGGTACAGCATGGATGGCTTT CTTCTGTGTTGTCATGCTGGACATTGCCTTAGAACTAGCCAGAACTGACCCAACATATGAAGACATGGCT AGCAAGTTCTTTGAACACTTTGTAGGAATCATTGATGCTATGAATGCCATGTCAGGAGGTGGAGGTCTAT GGGATGAAAAGGATGGATTCTACTATGATGTATTGAAGACACCAACCTGTACTGTTCCTCTAAGGATCCG CTCCATGGTAGGCCTGATTCCACTCTACGCCTCGCTGACATTAGATGAGGAAGTGATTGAAAAACTACCT GGTTTCAAGAAGAGATTGGACTGGTTCATGAAGCACAGACCTGATCTCTCATCCCATCTTGCCTACATGA CGCGGGAAGACACTGGCAAGGGGCGTCACCTCCTAGGCATCCCCTCACGCAAGAACCTGAAGAAAGTACT CAAATACATGCTGGATGAGGAGGAGTTCCTATCACCATATGGGATCCGATCATTGTCCAAGATCCATGCT AGTCAACCATTCCAGTTCCATGTTGAAGGGGAAGAGTATCGAGTAGACTATGTTCCAGGAGAGTCTAATA CTTATCTATTTGGTGGGAATAGCAACTGGAGGGGACCCATCTGGCTTTGTGTGAACTACCTGATCATTGA ATCCTTGGAGCGCTATGACTTCTTCTACGGAGAGACCTTCAAGGTGGAGTGTCCCACAGGATCAGGAAAC ATGATGCGTCTCAAGGATGTTGCTAAGGAGATATCATCGCGCATTGTCAACCTTTTCTTACCGGATGAGA GTGGGAAGAGGCCGTGCCATGGGAGTAGCGATCTCTATAAGGATGATCCGAACTGGAAGGATCTGGTTCT GTTCTATGAGTATTTCCATGGCGATACGGGATGTGGTGTTGGTGCAAGCCATCAAACCGGCTGGACAGCT GTAGTAGCATCGTGCCTTGAGAAAGTCAAGAAGGCGTAGTAAAGATGGCCACCTTCTTGATTGGATATAC GAACCCCCATTATACCTTTCTATACAAGTCTTACTTCCATAGGTAAACATATTTACTGTATGCCTTTATG CCTTTATCAATGCTGCAAAAACAATGTTTTCTTTGTTTTTGAACTAAACTGGCATAATAATAATTGCGTT ATATATAGCTAGTACATTTGAACTCTTTGTAGTAGTATGGTCAACTAGTGGGACAAATAGTGGAATGCCA CAATTAATTTTTTGGCACACATAACATACATGTATACATGAACCATGCAGTTAACAACTCAATTATTCAT ACCCATTGTAAAAATTTAATTTTTTAAATAATTTTTTTGTAACTCAAGAATAAAAGGTGGACTGGTTGAA TTAGGGCTTTGGTTGAATACATTTAGATGTAAGCTTTAATATGTCACATTCTCAAGAAAGTTAGATCCGG AAAAAATTAACTTTTCACGTTACAAAACTTACAATATTTAGTAAGGGTATGAATAATTTACTTAAGAAAA TCATATATTTTTATAGAAAGAGGTAGATAAGCTTATTTAGTTTTGTAGATTCTAAATCATGTATTTCTTC ATATGTGTAGCTTATCAGCAGCATACTAGTTATAATTTAATAAGCGCTCCAATTCTACATTTCACAAAAC TTTGACATTTACATATATTCAGGCACACGTAAGCACTAACACATGAACTTGCACGTGCACATACATAAAC AAGAACATAAATAACAAGTTTTCACAAAAGACATTCATTTACATAATATTCAAACTAAATGCATTTCATG TTATGCCTTTAAAAAAAAAAATTCCTTTATCATGTGGCTGTTATATATATATATATATATTGTAGTTTGG TCGCCTAAATCGGTTGCTTCTTTGAGGGTGTCATCACATTCAAGCTCTGGCTGAAGATGGCGGGTGCCCT GCATTTTTCAATTTTGAAATAATTAGTCAACTATGCATTTTTTTTAAAGTTGATTTATAACATGATTATA TATATGTATTCTGACTTTTGTTTGTGTTAAATTTAATTGTGATAATATTATAATTCTATCCATTGATATA TATATATATACGGTAACACTTCTTGATTTCACACTAGCATGATCGAGTGCTAGATTTATAGAGATTTAAA GTTGATATAGTTCTACTTTATCATACATTTTTATGCTAGAATGTTCTAGTATTATCACTATAGAGAGAAC TGGAATATATATATTTTACAGGGTTGGAAAAGTCTCTTATGTGATGTGCTGTATGTGCTCTATGTGCTCG CTCAAATGTTCATCAGAATATGTTTTGGCTAATAATTCCTTTGAACCTTGACCTTATGTAGATGGGTTTT TCCAACTGTTAGTGTGCTCTCAATTCCATCTATTTATTTATGGAAACAATATGAACAGGGTGGTAATGTC ATATTATATATTATTACTACAACATTGAGAAATAGTCAATAGTTTTCTACTTTTGTTATGCATTTTTTTT AGTTGTATGAGTGTCTATAATTCAAGCACTTTGTTCAGCAATATTTTTTTCAGCATTAAAAAGAAACAGG TAGATATAGTTTTGATGCAATTTTTTTTCTTCTTCAATAACGAATGATTAGCCACACTTATGGAATTGAC CGAAGTTGATATTTGTATTTCACTTGACGGCGTCAAGCAGACCTGATTTGAAATGTATTAATTAAAGGCT ATGTTTATACCATACAGGCTCTACTTTTTTTAATTTAACTTTTCTTTATCTTGTAAAGAATTTTCTGTTT CTGTCTTGATAAATTGTTGCAATGTCAGGAAAAACTCTTACAATTTTATTTCTGAGCCATTGAGTTCATT TAACAATATACAGATATGTAATGAAACCATATATTTATAACACTCATTTACAAAGCATTAGGTTGGTAAA CTATAGTGTACATTATAATTTTTGTGTGCAAACTATTGGCAGCATATTCAAGCAATTTTTCTGAAGGTTT GTAATGTTTTTTTATTTACACATGTGTTGTGACAACTAACAATAGAATTATGTACAGTTTACTGTAATGG GTAGACTGGGTAGAGCCATACCAGAGCCATTGTAATAATTGTTTGTGAATTTGGTTTTATGAAAGTTTTT TGATAACCGATTACACAGTTACATTATGTGGTGATATTGGTTTATGAAATGTGCATTATCATTTTTCTAT TATTCCAACTGGCTTGAACTCTTCTGTGCACGAGCCGCTTGCGGTGAGTTCACTAGTGCACACCATCTGA AGATACCGAGCGTGCACTGCATTTACATTATGCACAACAGGGTCTAGTGTGCGTTATTTTGTTAATAAGA TAGCGACACATGAAAATCAAAACAAACAAAAGTCTAGATCTAAGGTTAGAGTCTACGAGAGTTAGACTTA GATATATTTGGTTCTAGAAACTGAAAAGATAAGGCCTTGCTACTTGCTCTACGCGTACGTACGCTGATAC TTTTCGCTGCGCTTTTTTCGCACTTCGTTCAGACTGCACAAAAAAGTTGCTTATTATGTGACGCGTTTTG ACCAATCACAATGCTTAAAATACTAGAGCTATTTTATGAATACAAAATATTGACCAGGCTCGGCTCTACT TGCACACACAATGCAAGGAAGTGATAGATGCTCATGAAATTAACAATCGATGCACGCAGTGGATAGGATA CACACATTTCTTTTAGATTGGTAAATTTTGCCACATTTACAAATACATTCTGAACAGGATATTTTGTTAG AATGTCCCGTTTTGAGAATCCACGAGTTGCATGCGGTATATAAAACAAATATTGACTGCTGAATTTGTTA GGTCATGGTTAAAACTATAGAGGTAATAAACTAATAGAGTATAAAAGCTATAGATTATACTACGCGTCTC AACTTCATCTCGTGGCACAGTACAGTGTTGAGATTAACTTGGGCTATAGTTTTAATCGTGCCCCTCAAAG CAGTCAATATTTGTATACTATTGTAGGAGCTGGACATACCGTGCTCTGGTCATGAGAACCAGCTTGAGAT TAAATCACATTGATAGTTAGAAATCCTATGGATTAGTATGTTCTCTCTATAATTACAATATTTCTTTTTT CCTAATGTTATCTGTCAATATACTTAAAAGGTTAGAACATGAAGAATGAAAAAATATTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds