Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT122064.1 TSA: Strongylocentrotus purpuratus WHL22.724508.0 mRNA sequence GGTTAGCATCCTCCTCCCAGTGCGCCTCACCCTGACAACATTCCAGCTCAGCTTGGTATCCAGCATGGGG AACCCCCCTTTCACATGATGGATCCACAACAACAACAACAACAGCAACCACAGCAACCACAGCAACTCAT GGCATACTATGAGGGGGAACCAGTCACCACCCGTGCACACTTCCATCTACCCCCTATGCTGGCCCCTCCT CCCCCACCCTTAGAGCACACCAACTCAGGTGCCCCCGTTCAGCTGAGCCACCCAATTGGACAGCTACCCC CTCCAGGCTTCCTACCCGGGGTCGGGGAGCCGGGTCCCCTACCAGGCCAAGTCATACCCCATCACCACCC TGCCTTATCTATACATGATAGCGCTCATCCTCTTCCACCTGCTTCTATGCTGGGACCTCCTCTCATAAGC CAGGAATTAACCATTCCACATGCTTCGGATGAAAGTGCAATCGAGCCCCAGCCACTCCCCATCGTCCCAC CCCCTCCAGACATTCAGCCAGTCATAGACAAGCTGGCCAAGTACGTGGCCAAGAACGGAGATGAGTTTGA AGCCAGTGTCCGTGCTAAGTGCGACCCTCGCTTTGAGTTCCTTGTGCCATGGCACAGCTACAACGCTTAC TACCTCGCTAAGAAGAAAATGTTTATCCAGGAATTCAATCAGGGTGTAGAGAGCGGCAGTGGAGAGCAGA AGAATGTAACCGATAAATCTAAGAAAGTGCCTGTGCGGTTTCCTATCAAGCCAAAGAAAGCTGAAGAGCG AACGCTAGAAAGAAAGAGCGCCCTCCCTGTTGAGAGCAGCAGCAGTGACTCTGACGGAGACCAGGAGGAC TCCAATCAAACTACCTCAGCAACCTATCCTCAAGGCCAAGGCCCAGGCCGCAAGCTCTCAATGCATGATG TACAGTACAAGGATATGATGGACTATGATGATAGCGAGCAACAGTACAGTGGGATGCAGTATGGTCCTCA GGGAGCGGGGAGTCAGTACGCCACCGGGGAAGGGGATGCTTTGTATCCTAATCAGGAGTATGAACAAGAT GAAGCTGATGATAGAGGGATGGCCGAATATAGCAGGGAGCATCAGAGAACTGGGGGTAACCACCAGCGAT TGGAAGACAGACTTGCCATGGCAGCTAGGAAGAAACTTGCCAGTGCTTCACAGGAGAGAAGTGTGCAGGT TGAGAGACGGAAAAAGCTAGCTCTCTTCCTCAGTCAAGTCAAGGATAGACCACAGGCTGCTGCTGCTGCT CAGGAGGGGGGCATGTCAGATCCAGAAAGGAGCTACAGGGAGGATTCAGAACGAAGCCACTTGCCCAGCA GACGGAGGTCACCCGTGAGGTCAAATCGTAGAGAGAGAACAGCAAGCCCGCCGTATACTGAGAGTAGAAG CAGTCGGAAAGCCCCCTCTGTGCCCAAATCTTATCAGACAGCTGTCAACAGAGAGCAAATGGAAAGGGAG AGGAGAAGAAAGCGTCATTCCAAGTCTCGGTCTCCCTCCCCCAGGAAGATGAAGAGAAAGTCCCCTCCCC CACTCGGTGTGGGCACTTCAGCAGTAACTGGCAGGTCCAGTCCTACATCATCTCCCACATTGGAGCCATT CCAAGACAGAGAGGCATCGGTATCTTCACCCGGCAGTGATTCAAGCTCAAAGATGGGCAGTCAACTGAAC ACCCAACCAAGTGGATCAGAAACCAAAGCAGATACTAAAGGAGGTGCTAGTGATTTGCGAGCCAAGATAC GTGCAATGCTGGCAGCGACCATGAATATGAACAAAGAAGACATTGGATGATATTGGTTCAGTCAGCAAAG AAACGTTTGTGGAAAGAGCTGCAAATGGAACTAACGTTTGAATGATATGGAGGAAGAAATCTCTTTGAAT GCTAGGATGCAGAAGACAGTGTGAAAGGAGTCCACTTTTCATTTCCATAGGATGACTGAGGCAGTGCTTT GCCCTTGATAATCCTATGGATCATAAACCAAGCCGAAATATCAAGCCCTTCAGTGTAATAGAAAGAGGAA ATGACTATGTGAGTTGTGCTATCTGAATGCCATGAGGAGAGACACCAAAGGATGGCTCTAATACTGAGAT GTAATATTTAAACTATTGAGGACTCTTTTGGTTAAACTCTCCTATTTATTCACATTGTTTTATCTTTCTT TCAAAGATCTTCCTTCTCTTTAACTTTTATTTAAAAAATCAAAACAACAAAGAGAAAAGAAAAAAACTCA GGGACTTTCTTTGATTATTTTCAGTGTGTGAATAACAAACAAACAAAAAAGTAAGAAAAGAAAAAAAATG TAGGAACATCCCTTTTACTGTGTGTGTGGATGGTCGTGTGTTAATTCCTGATGTGAAACAGGGTTGTTCT GACGTAGTTCGAAATATCCCGATGTGTTCCGCGAGATTGTTTCAATGTTACTGTTATCACCTATTGAAGA AAAGGAAGATCTGTGAAAGCTTTACACTTGAAGAAGTATCTTCAAGCTTTTAAACCCTTTCACTGCTGCC ATTAACATTTTGAGATTGAGTTGTGTGTTATAAGAAACAGTTGTTGTATTGAGTAAGTTAAGGAGTGCAT GTTTGTTAGGACAAATCTGCATTGGATATGTTATTTTCAATGTATATCTTTTAGAGTCAAATGCCATGAT AACATTCATGTATTTCTCCATATTTGTGCTTATTGAAGTAGTTATTGTAAGATAGTCTGTATTTGAAATT CTGCAGGTATTGTACAAAAGAAAAATACTCTTTTGATTGAAATCTACTCGTAATGTCAGGGAATGTGCAT GTCAGCCATCTTTTTTCTTCATTCTTTTTGTGAGGTACGTGTACTTACCACATTCCTGAAATTGAATCGA AGACATCATTTCCGTTGGCAAATATTATGATATATTCATCTGTACCCAGTTATACATTACTAATACAGCC GTGAAAGTACCAGAAATGTGATGCTTACAATTTTGAAAAGCCATTTTGAAATATTTATTTTTGAAGCATA TTTAAGATTGTTAAATTATTTAATCAAGCTGAATAGCAATATGAAATCCATCTCGTCATGAACTGAAAAT ACTTGTAAAGAGGCCCAGGGTTTCATGAGTAAGAATTATTGTTCGAGGAACATTGAAGTAATTAGCAAAT GTATTTTCTTGCGTTGGAAATGATTGAGTGTTGGGTGTATTGTGAACAGAAAACAAATATGCATTTGATT GAATAAGAACTGAAAATATATATGCATTTCATTGAATTTTGGCATAATCATCATTTATGTGAAACTAATG TACCATGTATTTGTGTAAATGAACATGTCATTTAAAGGAGTTTGAAACAAAAATCATTAAAGTGTGTCTA AGATCATCTAATTTTCAGATTGTATATATATGTGTGTATATAATGATTTCAAAGAAAAAAATTGAAATAG ATCGGAATCAAAGAAATTTGATTCTTGCATTGTACGTAATACATCTGCAGGAGTTGTTGGTGGTACATGG AAAACGAACATGAATAAAACTTTCTTTGTTGTTTGTCAAATAAACCATGTACCATGACAAAAGACAAGAA ATGCTTGTAATTCGAAGATAATCCACTGAATACTCTTTCTTTTATTTTGAAATGTATGCTGCTGTGTTTG TGCCATCAACCTGGATCGACCAAATCAATTGATTCATAATATATGTAATGTATTTTCCCCGTGACATGAG AATTCATTCTGTTAATTAAATGTAATGTTAATTGTTATTTTATTATTGAGTAAAGTGGGGGCACGCTACA AGAGTTCTATCTCGCACCCCGGGGCAACATGTCTCACACGGCCGGTTGTAGCAACTACTCCGAAGATCAA GATACATTAATCTGATCTAAGGAGACACGAACGAACGCTGCTGTTATGTTATATCCATACAGGGTTAATC CATGCTGAAGAATATTGTGGGGTTTTCCCCTTCTTTCAAAAGACAATCTTGAATGGGTAATACTAATCTG CTGATGTGATCAGTTAATCCCCACATTATTGTTCAGTGCGAGGGAAGAGTTTGCCAGGATTTACCATACT ACTATTACTACTTTTTCTTTTGTATGCATAGACATGTAGTATTTTGTGCATACGTGTTTTCACCTCATAG GCCGTGTTATTTCATGTGCTTTTTGCTTTTGCTGTGTATTCTGCTAGTAAGTTTTTACAAGCTTAGCAAA GAAACAGTATACTTTAGTGTATGTAGTTTTTTATTATTATCTTTTTGTTCTCATCTATATATTCATTTGT TATTTCTTTTTTAATTGTTAAATTTATTCTTTCTTTTTTTCTCAGGGGGAGGGGGATCTTATTTGAATTC ACCAACATTTGTTCCTGAAACATTTACTTCAAGCTTTGTATTGCCAAAGATAAAGGGTTAGGCCTTTGGG GTTAGTTTAACCATAGTGTTAGGTTAGGTTTGAATATTTTGTAAGTGTAAAAATTTGACCATAGAGCAAC TGTTCCTGAAGCATGTATTGTATAATAAGTCTTACAAATTCATCATGTGGCAGGGTTTGAATGACATTAA CTCCCACGCCTGTTTTGTATATGGCATTCCTGTTATTCTACTTCTTGAATTTATTTCTTTGATGTTCTGT AAGGGCTTTCCATAGATTTATAAACTTGATTGATTGTCCCCCACATATATATGTACACTACCTAACCTTC AGAATGTCTTTCTGTAATGCATTCCGATGGTTCCTAACAATTTAACTGATAGAGATGGGTTTGATACAAT AACAGTATTTTCAGACATATTCTGCAGCACACGTTACAAGCATGCTGAAAAAATCCCAAGTCTTTCACAA AGAAAAGTTGAAGTAAAAACATCCCAAGACGTACATGTAATAATACTACCGCACTTAAAAACATTGGTGT TAAACTCTGTAAAAATATAACGCGAGAACATTTGGCTGTTGAGAGCCAGAAGGATGGCGTTTAAAAATAT GACTCAACACCCTTCTGGCTCGTGGTAGACAATAGAGGGCAGTCTCATATCTTACACTACAGCTTTGCTA ATGCAAGTGTTGGTTATTATTTTGTTGTATTGCGTGTTATAGTAAGGATTTTGCGATGGGTTTTTCATCA ATTCCTGCCCAGATTTATGTATTTCCCAAAAGTAGCAGTTTGTTTTTATAGATCAACAATGATGGCAATG TAAATATTTGTATGATGCAATAAGAGTTATCATGCAAATATTTTGGTCAATAGTATCAGTGGTTTCTATA GGTTTAAACAGCATCTTAGAAATTTTACATACCGGTAGATTGTTCCGTGTGCATTTTTTGTTATGGTTAG TATATGTGTACATGAATATCAGTCACTTACCTTAACAAAAGAAAGAGTATTCAGAATGTACATTGGCAAA ATATTTTCATTGTCGATACATACATTGATCATCTTTTTTTTATGATAAAAAACAAGCAAACTGAGTGCAT ATTTTGATTACTTACTCAAGATGTTTGTGGATGTAGCCTTCCAGCATTTATTGACAATATCTATATGCAA AGATGATTAAGGAGAGGAAAATAGACTCGTCTTTGAAATACAAATGAACTTGATTTTTGCTTGCTTAATG TATTTGAGAGTTTATACAATGTATAAACTAATTGTGTGTTAGTATTCAGTTGAGAGGGAGCTACCTCTCA TGAAATATCAGCCTTTGCAGTGTAGTAGATTTGTAGGTACCAAAGAATTTTGTTTTGTTTTTTTGTACAA AATAATTACAAATTGTTATTTGCCATTACCGAGATTCACATTTTAAGGAACATGTGTGATTTCCCAAAGA AGGTGAATTCTATTTCACTTTGTTGTATTGCTAGTATATGGCTTACTTGTGACACTACATATTTGTTATT GTTGACATTTTGGTATGTTCGTTCACGGAAGCTGGAGATGTGTAAATTGTACATTTATTTTATTGAATTG GTCTTGATGCCCAACAAAAAGGTGATTTGTTGCACATCTATTTAGTTGTTTCTACTCTTATGCCATTTCT ATAAAATTAAGAAAAGGGGCCTACTCACCCGACACTTTGTAAATAGTCAATATGTAAAAAGTGAGAGAAA GATGAGAGAGAATAAACTGTTTTATCATTCTTTTCAAGATAATGCTGCAAGATATGTTTGCTTTGTGTGT CCATTGTATATTTCTACATGTACTATAAAACTGAGTGAATATTGGAGGTGTGAGTTAAAAATAGATCCAG GATGATGCAACTTTTGTTACTCTAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds