Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011664528.2 PREDICTED: Strongylocentrotus purpuratus nuclear receptor ROR-beta (LOC592902), transcript variant X2, mRNA ATACAAATGTGATGTTTTGTTCATGATACCAACAATAAATTGCTTGTTCATGTACTCCATGTATCACATG CATTTTCAATGTAGGCCTTCTTATGACGGTTTCTAGCTACCTTCAGTCACACCGCTAACCGACTTTGAAT TAACCGACCGATTATGTATCACTCGGTATAATCATGAACCTAATACATGTAATCTTTCGTTCAGTCTCTT CTCGGTCTGGTGTCGGTCTTAATATCGGTGTAACACAGAATCATGAGACGCTTCAATAATGTACGCCATG TACTTTGAAGCTGCACAAGGCGTTTTAGATGTAAACATTGTTGAATGGTTTCATGATCGTTAGGCGTAGT TACTGGAGCACAGGGGCACATGCCGAAGAAGTAGAATAAGAAAGAGAAAATGGAGGAGGAGGTGGAGGAG GAGGAGAAGAAAAAGACCCTCTTTTTTTTTCTTTTCTCAACTCCGATAACGTGCATGTGTGAGCTCTGTT TAGCATTTATGTTATATGTTTTATCACGGAGATATGCTCGGAGAACACATCCTCATTAAAATGGACTCGA CCGTAGGCCTACTTTATGCAACCCTTTGTTACGTAATGAGGCCTTGATGAGCGCGAAGACTGCAATCATA ATCTTTGTAGCAGACACATAGATTGTGACTAACGAGCTAACTTTATTTTCTAAACTTTAAAAGCGTTAAA TCAATAATAAGCTCGTATAAGAATTCGTAAACTTATTTTTTAAATTTTGCATAGCTCCTAACAACTATAC CTCTCGGATCAAACCGATTCACTATGTAGACTATATAGTCTAAACGATGATAAACCTTATTGAGTCTTCC AAACAGTTGTATGATTCGGATGGCCTTTCCATAAAAAAAACTCATAAAAACTGTTGAAGACCTATACCTG TATTTGAGGTAAAAAATGAAATGTTCTCAATTAACATGGTATCTTGTAATTATCAACCCAATACAACCGA ATTAAAGGCTGAATGAAATCTATATAGTTCTTGAATTCACGCCATTTCTGGCAGATGAGCAGTGGAGACC TGTCAATTCGTCCATCATTGATAAATAATTGATTGAACAAGTCGGATATCTTATCGCCTTTTCTGCCTCG AGTTCGAAGAGCCTGGGATTTCCCTGATAAAAAAAAGGAAAGTCGATGATAAGTGTTTGGTCATCACCCC CTCGCAGACACAGGTGGGTGCAACAGGCAGACGGTCTCGTACACCGTGCGCTGCCAGCTGTTGTGCGGCT CCTCCATCGGCGGCGACGCACTCGATCGTACTCGAGGAGTTCGCCCACAGACATAACAGATTCCGGGTTG TATTATTTTGGCCGAAGCCCGTGATGTCAAGCTCGCACGCACGACACATATGTCATCGTCTCGCGGCTAG CTGCAGTCACAATATCTGGGTCAAACATGTCAGAACGGTCATCTTCACACACTACATGCATGCCCCACAA CACCGTCGCCAACGCTAAAGGCTCTTGATTCGTCATCTTGTCTCGTTAATCCTCAAACTTTTTGACAGTC ATTTGAAAGATATTTCGCACCAGGTGATCACTCCAGGCACGGAGGATGCAGACACTGGGGGTTTACCTGT CTTCTTGTGCCTATGTCATTTATTTAATGATGTCAATTGTCATAATGAGATATTGCTCAAATCCTGATAT TGTCTAAGAGACGTGGTTTTGTTTGAAACGTAACTTATCTGTAAACTGCAAGGAGAACGGAACAGACGTT TGAAGTTTCTGAGATTATATCCAATTCGTGGTGGTCACTTTGTATTTCCCTCACCAACCCATCACCCGAC AAGTCGACTTTGCGATAGTCAACAACGCCGACTTACATCATTATCTAAAGACATCGACCCAACAACAAAA CCACCGTGGACATCGTCCAATCCAAGATGGCGCCCATCAGCAAGAAAGCCCCCATTAAACCCATCCTCCC CTCGTGTCGTGTGTGTGGTGACGAGGCTTCTGGGATACATTACGGGGTGACGTCCTGTGAAGGGTGCAAG GGATTCTTCAGACGCTGCATCGGGAACAAGACCCTCATCGTACAGTGCCAGAAGGAAGGACACTGCGAGA TTGGGAAGAACACTAGAGGGCGCTGTGCACACTGCAGATACCAGAAGTGTCTTGCCGTTGGCATGTCTGT TCATTCCGTTCGCGTAGGACGTTACTCTAAGAAGCAGAAGATGAAGAACCTTGCCGAGATCCAGAGTCTG GCTACTCCTGAGCAGATCGTCGAGCGGGAGAGGAAGGATCGCGAAATTTATGCACTCATTCAGAAGGTGG TTAACGCTCATGACGTCACCAGCTCCAAGATGACAACAACTGCACACATCAAGCTGAAGCAGGATTCCCA GCAGATGCATTCCGAGAGACTTCCCGTAGACCTCTCCGCCCTCTCCCTTCCCGGAACCAATGCCTGGTCG CACTTCCTGGATGAACCATGCGACCTTGGGGACTTGTACTCCAGGATCTGTACCGTCAAAGGCTACCTGA CCGACGTCCTCACACCCTCTGTTGTCAATGTAGTGCAGTTCAGCAAGAACCTACCTGGCTTCTGCGATCT CCTGCAGGAGGATCAGATGACTCTTCTCAAAGCTGGCTTCTTTGAGATCTGGCTGCTGCGAACGTGCATG GAGATCGCCTTCACGTCGGACTCGGTGTCCTTCGGAACGGATCACGGGTACGCCATGTCTCACCTTAGCA TGCTTGGCTGTGACTACAGGTTCTGGGACGAGCTCTTTGACTTCTCCAGGAGCTTCAACAACCTCCAACT GATCAAGGAAGAAATTGCTCTCTTCACCACGGTTGTTCTTTTCAGTCCAGATCGCCATGGACTTGTGGAA CCCGGCAAGGTAGAAGTCCTGCAGGATCGTTATCTGGAATGCCTCAAGAGAGAAGTGACGCGGAGGGACT GGAAAAACAAGCAGCTCTTCGCAAGGCTCCTGATGCAGGCCACCAACCTACGGGCAGTGTCCGCCATCTT CTTCAAGAGCACGTCCGAGTTCAGACACGCATGGCCTTACATGGAGATCCCGGCTTTGCTGCAGGAGATC CTCAACTATGACTGCTGATAACAAAGCAAAACACTTTTAAAAAACATATCGACGGACAATTGTTGTGTTT TCAAAGTGGCTGTGAAGATTGACTTCTTTGTGTGCGATGTTGTTTTTGCACGTGCATGTGAGCTGTCGTT AGGACACTTCAGTGTATGTTCTTTATGACTTGTCTTTTGGGTCTCACTTGTTGAACGATGGTCCCATTCA TTTATATTTGTGTCATGTGTGACGGTTTGCTTTGCTTGGCCTTAAACGCATCTATAGTGGGCAGTGTGTG GTAGAATAGAATCGCAACAGATATTACTATACTATGAAGACATCATGTGGAAATCCTCGGCCTGGCGCAG ACGATTCGCACATGACAAGTTCTTCGTATTTAATGTGTTTTGTATCTATTACTTCTTACTGTGGCCATGA TTGCACAGGTTTATCATATTTTACATCTGTAGTGATAAAGTCTCGCTCAGTCTATACTAGTGTAGCTTTT TAGCATTCATCCTCTGCTGGGCAGATTGAATTTTAGCATCTAGATAACAGCATTAGAGTGCATGGTCAAT GTCTTGATGACATTATAGCACTGTTGAACGGTGAACGTAGTTCTTAATCTGTTTCTAGTTATTAGAACAA CTAGCACACGTACATGAATTCTTGACATTATACATTCGTATGACCATGTCTATCTATGTGTAACATCGTT TGTTAGTCATGTTATGCAACACATAACGAACATTTAAAGAGGAAATCAGATTCTTGAAAAGAAACACTGT TGTTTTGTTGTAGTTTTCGAAAGAAAATACCAAAATGACATAGATTTTTGTACATAAATCTCTAAGTAAG GTGATGGTATGATTTATATATATAGTTGCGCATGGTGTATATGGATGGAAACGCCAAATATTATGAGAAG CGAATATGTAAATAAGATATATTTTATCTATATGAAACCTTGATGAGACTGAATTCTACTCAGACAAGTA GAATTAAAAGAAATATGAATTCTCACTATAATTATATCGTTTTCATCCGCCAGAAGGCTAGAAAAGGCAA CATAACGTGTCTTGATAAACCCCGAGTAGCGACTATTTGCCTTCAAAGAAAATTAGTGATTTTAACAATA AATTAATTTATCTTACTTCAAAGTCGAAAAGAGAACATCAGTTAATAATATTAAATTTGTTATCGTCGCA CAAAATGCACTGCCAATCGTCCAAATTGAAGTAGCGACATACATACTTTTCGGAACTTATCGAAATGATA ATCAAATCTACAAAATCTATTGATACTGCGTGGAGTTCCTGAGCTGCAAATCATTCAGGTTTTAATATCA TACCACATATTAAAATGTACTGAACTTTATTAGTTCCGAAATTTAACAGTCTGCCCCTTCCCAAAAGGAC TCGCATTACTCATTGTCAAGTGTTTTAGCAGTGATAGAACAGTTAAATGAATGCATATTTTGAAAATTTG TATCAGAAACATATTAATGTATATGTATGTGTTCGTAATGTTATATTCGACAAGACTTGCCTTTTATATT TTTGAATTGATTTTAATTTGTGGTGCCTTTGCTCTGTACGCGTATATTCTTAGAACATTTTGCACACCCA AATTCAAAGATAACTTTCAGGATAGCCATTTAGTTTGATAGATTATCCTTTATATGTAGTTCATTTCTTG CCTAAGAACACTGACATGCCTTTAATTTTCCACAGCAAACGTAATTGTTATACATGTAATTCCTAGCATT AAGTGTATCGGCGGTGTTTTGTCTGTTGATACTCTACACTACAATGTTGGGGGAAATGTGTGAAGCGTTA ATTTTGTGCTTTTCTCTAAAGCGAACAGAAATAACGCAATACAATAATTTTTGTGCAGATTTCAAGAGGG TATCTCAGGAGCGGATTATTATTTCAATCAATGATCCATGAATGATGACGCATTTCTTTCCCTTTTTTTG TTTTTTGTTATTGATATAAAGTCATGAAAAAGGTGAACTTGAAATTGTAAATATTTTAGCAGTGCAAAAT CTTTTCCTTCTTTTTTCTTTTGTCCGAAGAAGTGCGGTACAAACTCTTTCTGGAAAAGAGCTTCAACGAC ATTTCAAAGGGAACTCGGCGCGAGATTGATTGTTAGATTTTAGAATTGATTAGTTTTGAACAGTTTTGAC AGGTCAATAATTGTTTCTTTTTTGTTTTGTTTCTAGATTAAAATTCATAGCGAGAATAATTTTTTTAAAT TTGATTCTTTTGCATTGTACAGAATGAAACATTCGTGCAATTTTGTTTTCAATGACATGTCATCGCTTTT CCACAAATGTTAATATGATTCATGTTTTTTAAGCTTAAAAAAATAAGTTGTTCTCTTGCAAAATATTGCA TTAAGAAGTGTTCACTGTCATTTTAACCAGGCATAGTGAAATTTGAAAGGATTAATATTTTCTTATGTAA AGCCGAAGATATTGAATATCCATGAAAAAGACTTAAATACCCAGTATTCAATCATATTTTTGCTGATGAA GACTATTATTGTCGTAATGATGATTATGTCATGTGTACAAATGGTATCGTGTCAATGTTTTCAGATTGAA GTCTTGTCATTTTTCCCCCATGTTTTCTTGGACCAGTATTTAACAGCGAGACCAAACGAAAATGACGAGA CCAAAATACGATTCAGAAGAACATGAACTTCCATGTACTAAAAAGGTTAATGCTGTCAAATCTTATAGTC AGGAAGATATTTTTGCCGACATATTTGTGTATATAGTGATGTGTCTATAAAATGCGAAAATGGTCTAATG TTAAGTAAACCCCGGATACAAAAATTGCAAAGTGTGTAATTTATTGATTTTAATCAAAGGTATGTTGTTT TCAAATTGTATATGTGCATTGTACATGACTGTATAGTGATAGTTCTATCCATTGACTTATGAACAAACCA ACCTGATCACAATATCAACTCCATATCTCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTATTCATCT CTCTCGCTCTCTCTGTTCATCTCTCTATCTGTTATTATCTCAATCAACTTGAAAACAAAATCTATCGAAA AAAGTATAAATGGGTCCGATGGGTTGACATATTGCATAAGATGGTTTGTATAAATGTGTGTAAAGTACAT TTTATGTTATTCTGCTTTCCTCTTGCTTGAAATTATTTTCTATGACTTGAAAAGGGTATCTTTTGAACAT AATCACAAAGACTATCGAGAAAACAACGCAACAGCAATTTCCTGCTGTGTTACCCATAGATATAATGTTT GAATTGCGTAATACGTATTCTCGCACGAAAGGTTATGAATAAAGCTGTTGAATGAATTGATTTTTATTCG AAAGTCTTTGTGATCTCATTGAGGATAATTTATGGTAACAGCGTGTCAACAAAATATATTTATGCTTTAA ATAGAATTCCTGATGCATTTTTTAAGCAACTCATGAAGTCATCATTATATAAACATATTTTTACACTGAA TGCTAATCTCAAAGTTATTTATTTTCGTTATTGATTATTGCGTTGGTATTGTAATGCTATTGTCTTATCC ATTGCTGTTCTGCTTCGGTTAAGAGAGATATACAAGATGAAATTATTAAAAAGATATCACGCTTTAAGTG GTCATGACTCTGTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds