Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103074.1 TSA: Strongylocentrotus purpuratus WHL22.104028.0 mRNA sequence GTACATGTTACACGTTACAGCCTCCAGGCCTTGTCTGTCATGGAGAATGGATATGGGCGCAGGCCCAGTG CAATGGCTAGACCGGAAGACAGTCGAAGCAGCACCCCACTCAGACTCTTTGTTGATGCCAAGAGGAAGAT TAATGAAATCTACAAGGAGGTGTCGGGTCACATCACAGACAGCCATGTATTCCTGGACGGCATCTCTGCA GCCTCCCAGGTGGTATCCGAAGAACAGCTGAGTAAGGTAGAATCATTCAGAAACCAAGTTCGAGGGATCC AAGATGTCCTGGAGAGAGACCACATGAAAGTAGCATTCTTCGGCAGAACGAGTAACGGTAAGAGTACAGT GATCAACGCGATGTTACGGGATAAGGTGCTGCCCTCTGGAATCGGCCACACCACAGACTGCTTCCTGTGT GTCGAGGGATGCGAAGGGCAGGAGGGTTACATGAGCCGACAAAACAGCTCGGAGAAAATGAGTATAACTT CTGTGAGTCAGTTAGCCCATGCGCTGGCAGGAGAGCGTGACCACGAGGAGTGTCAGCAGAGTAGCATTCT TCACATCTTCTGGCCCAAGACGCAGTGCCATCTTCTCATGAATGATGTGGTCCTGCTCGACAGTCCTGGA ATAGATGTAGAACAGGATTTGGATGAATGGATCAACACGCACTGCGTTGATGCTGATGTCTTTGTCTTGG TCTTAAATGCAGAGTCTACTCTCATGAGAACAGAGAAAAGCTTCTTTCACAAAGTAAGTGAGAAGCTCTC CAAACCCAACATCTTTATTCTGAACAACAGATGGGATGCCTCCGCGAATGAACCAGAGTTCATGGAAGCG GTGAAGAGGCAACATTTGGAGAGGGATGTCAAATTCTTGGTGGAAGAGCTCAAAGTTATGACTGAAGCGC AAGCCAAGGATCGGGTGTTCTTTGTGTCGGCCAAGGAGGCCCTTAACTCCAGGATACCCAAGACCCTGTC TACCCCAGATGCAAATCCAGTTGTTGAAGGTTACCAGGCAAGGTTGTTTGAGTTTGAGAACTTTGAGAGA AAATTTGAGGAATGTATTTCCCAGACTGCTGTGAGAACCAAGTTTGAGCAGCATGCTAAGCAAGGCAGAC AGATTGTCGATTACACACAGGAGATTCTATCACAGGTCTTAGAAGCAGCTACCAAAAAGAGAGCGGCCTG CATCGAGAAGCGCAAGGATCAGAACGATAGGTTAGACTACCTGAAGGACCAGATGAAGATACTGAGCTTA GAGAGCAAAGAGAGGATTAAAGATGTTTCTGAACAATCAGAATCAAAGGTATCGGCTACCATGACAGATG AGATCAGGAGATTATCCCTGCTGGTGGATCAGTTTGATAAACCTTTCCATCCTGAATCATTAGTGGTTCA AGTCTACAAGGAGGAGCTTCAGAAGCACGTGGAAGCAGGTCTTGGTCAGAACCTAGCAGCAAGATGTTCA GCTAATATCAAACAGTCAGTAGAGGAGGTCCAAACACAGATGACAGAACGTCTGTCTGCCCTCTTACCCG GGGATTCAAAGGAGAGGGTCGAGGGTCTCCTCTTCCGCAGGGACTTTGATCTCAGCTACCGTCTCGACTG CCAGCACCTCTTTGCTGACTTTAAGGAGAATATTGAATTCCGCTTCTCACTGGGTCTGACTGCCATCATG AACAGATTTCTGGGACCGAGGGGGACCAGAGCCACCCTTGCTGGCCTCACGGGAATGGTGCCCAGCAACC TCCCTCCTGGGGTAACAGTGACAGAGGGGCCTTCTTCCGCTGACATGACGGTGGCCATGCTGTCTGGCAT AGCATCACTCTACTCAAGAACCTCAGTGGGACTCATGATCATCAGTGGCATAGTTTGGAAGTCCGTAGGT TGGAGGGTACTGGTCGTAGGGGGTGGTCTCTACGGTGTGGTGTACGCATACGAGCGACTGACATGGACAA ACCGTGCCAAGGAGAGAATCTTCAAGAAGCAGTTTGTTGAATATGCCTCAGACAAGCTCAAGCTTCTTGT TAGCTTCACTAGCTCCAACCTCAGCCATCAAATACAGCAGGAGCTGTCAGGGACCTTTGCTCGTCTCTCC CTGGAGGTGGAGACCTCCAAGCAGAGCCTGGAGAAGGAGATTGTTGATATGGAGGTGGAGACTAAGAGAC TGGAGGGCCTCATCACTAAGGCAAAACTCATGAGGAATAAAGCTGGCTGGTTGGACAATGAGCTGGAAAG GTTCATCAAGCAATATATTCTGCATTGACAGGAGCTATCACCATAGCAACCAAGATGGTGCAACTCTGGG GATGTGATCCTTCATACAAGAAGATATGCTACGAAGCCAATAAAAGCCCTGTGAAGGCCATCCAAATTTA ACCTGCTACAAGTACATGTATGTTCATTTGATATGTGAGATCAAGAGTTCACATATTTTGTGAATGCAAT GGGAGCCTTAAATATATTCAACACTATGGACAGTGAAGTGTTGGATCAGTCTCATATATTGGTTTTCATG TTGGTATAAAATTGGTGTAAACCATGTCATTGATTTAATTTGTTCCCTCCGCCATCTAAACATGAAAGGA TTATTCAACACTGAAAAATAGAGTACAATTCAATCAATCTCTTCAATTAATACTTATGTTTGTTTTAATC TCTAATTTACTCTTGACATAGCATATATATACTTGAGTTGTAGTTTATGCATAATCATTAAGTTTTTGTT GATTTAGCCCCAATCTGCCAAATGTGTTTGCAGAAAATGAACACCCAAATAACATGTATCGTCAAACCTG CTCACTAGAGGCCACAAAAGAATAAATTGGATCTGTATAGAGAGTAGGCTCTTAAAAAAAAAAAAAGGAA AACTGATATGTATATGTTCTAGTGATATAGTCCATGAAAACGGTTTGTCCTTGTAAAACTAGAAGCTTTC ACGCGCATGAAATTTTTTCAAATTTTTGTGAGTGGTTCATTTCCACAAAAAGTTTCATGCCACGACATTA ATTGAATCACAATCCACACAACCCAAAATCTGTGCATTAGCAAAAGTTTCTTTCTGTGGAAATGGTTGTC CTTGACCCTTTGACTCTGGAAACTGATGGATCCTGTGTTGAAGCCTACAGGAATGAGTGGACTCATTATC CATTGGGTTAAGAATTCGCGAAAGTTTCTGGACTTATGGTATTGTTGTGGCCCTCAAAGATGGAGCAGGT TTGATCGTTATAATATGAGAAATGTTATGCAAATTGCTCAAGTATAACTGAAAATATCTAAAGCTTAGAT GACATTTATTTATTGAAAGGCTTTGCTTCTGCGTCAATACCCCTGTCCATGCTACATGTACCGTATTTAA TCTTTTTCAATTTTGATTTGAATATTTGATTTTTTTTCTTCCCAAACTAAAGTTTCTGTTAATAACAAAT GTCATAATTGCAAAGACTTTCAAAAGTTAATTTCAATAGCCTAATGTATCACCTTCTGAAACCATTAATG TATATATTACATAATCCAGATATGATTTTTTTATAGCAGCAGGGTACCCAAAATTGCTTTTGAGTTCATT GCTTGAACGTCGTTATGTTACCGATATATTTTGAAGTTTGGAGTAGAAGTTTAATAAGAAATGCTCACCC CTTTACTTTCTTGCCAGTTCTAATTAAATTCCACCGTTATTCTATTGATGAGCCAAGCTCAACTAATCTT AGACTGTTGACTGGTATGTTATTATTTTAAAAAATAGTACTTGTTCAGTCCAGAAAATTTGCTGTAGCTT CTGGTGTTTCGTGTTGCTAAAAATTATTTTTGTACAATGTCGGTTCGTTTTTCGGTTGATCAAAACCAAT ACCGTAGTGGAATACAGGATTAAACACTCTGAACGTTGTCTGAAAAATAATGCAAAACTTCTTCCCGAAA ACATGAAGAAAAAAAATGAAGAATTCATCATTTTTTGTACCATGTGTGTATTTTTGTTGAAAAATCAATA TAATATGTCACAAGGCCAGATGAAAATGATGTTGTTTGCTATTAAATGCTATGCACCTAGAATTTTAAAC ATTTTACAGACCTTCGATGACAAAAGAATGAAGCGAAAACTCTCAATAATGTACATTGCATCTGTCTACT AGACGGGGTGGCCTGAACGGTTCACTACATGTGGCTTGTCGGCTCAAAACCACCAACTCACTTGAATTTA AATTGATATTCTGTGTAATTATTTCTCAAAGTGAAGATTTCAAGCTTTCCTGTGGCATATTACATGATTA GTGTGCTCATTAGAACCCATTTAAGTACTGTTAAATTAGGAGTAACAAATGACATTTATTCAGAGAAAAC ACCATTTCAGTTCTTGATCCTTTGTCAAATTTGCAACTTATTTGTTTTTTTGAGCTGTTGAGCCACAAAT TAAAATAATATTTGTATTTTTAAAACAAATGTAACTGTTATTGGAAAGATAAAGAGTCAGTGAGGTGCAC ACAATCAAATCCTGTGATACAGGTTTATGATCATGACCTATGACACAGCATAAATCATCTGCCTGGGACT AGAGCCACAAGGGCCATGCATTAAGTCATTAACAACTTTGTGTGTCTTCAAATCCAAACAGACAAAATGC ACAATGATACGTGTCTTGTGTAATGTAGGATTCATAGCCATTGTGTTCAATGGTCAGCCACAGGAAATAC GCCAATTAATGCTTATGTTGCCAACTCTGTTTTACACCTACATATTTGTTGTGTTATTAGTATCATGTGT TTCTGCTTTTTCAAAGTGTTTTGAATTACACTGTGCTGTCTATTTCTACAAATTTAAACCTGATCCTAGA TATAAGCTTCGTCTGAGGTAGAGTTTAAAAAAGGAAGTTTGACCAAGGTTTACGAAACTTAAAGATAAAG ATCAGTTCTGGTCATGCGATTGCATTGTAAAAGAAACATTGTGGAATCGATCATAAAAGGTTGATCATCT AGCATATAAGTATTGGTGTGTACTGCAAGGTTCTGGAATCATCAAAATGATAACAAATTTGGCCCAGTCT TGGTTAAGTTACAAGCACTGTACACAGAAAGATGTATATGGCACTATGCAACATGTGCACAATGTCTATC AGGTTCAAATAGATATACAGTACTAATTTACCAAATACATGTACATCAATTAGTAGGCGGCTTCTCGGCA AAATTTGTATCATCACGTATTAGTCAAAACATATTAATAATAATACATTATATTTTATTTATATAGCGCT TATTACAATGTTTGCACAACACACTGAAAACATTCAACACATGCACAAGTAATACAGTCGGCTTCTTACA TACAATATTCTTTCACATGATTGGTAATAAGAGCTTCCATTTCATTTTTTGAGAGGGGGGCGTTTCCAAA ACTGGTCTTTACCTTTATCGTATTGAAACACGACTTGACCTATTGGAAGAAGCCGACTGTATTACTTGTG CATGTGTTGAATGTTTTCAGTGTGTTGTGCAGTCATCTTTAAACAGGGCCTGAGAAATAGAGATGCAATC TGGTTACAACTTGAACCCATTACATTACAAAAATATTTTTTGAAAAACAAATAAAAGACACTATCATTCA ATCGTGCCATCGATAGCTAACCATGTGTAATGGAGCCCCAGGTCACTTGTAGGAAGATATCTCCTTCCTT AAAAATAAGAAATAACAAATTGTAGCAAATGTGAAGATTGCCCACTGTGACCTGAAGTTGTTTTAAATGT ATGAAGCCATGGTGCTTTGAAAGAAAGGAGAGAAGGAAAAAATAAGGGAAGATTTTTGTTGTTGGAAGAA ACATGAACACTGGGGCCCAGATGAACGAAGGTGTATGTTTATGGGAAATAATATGTCCCCGGTTATTAAG AACATGAAAACAAGGATTCTGTTTTCTAGTTGTCATTTCACTTGTAGGCCTATTTAGTCAAGTCTTAACA AGGTGTTTCGTCCCATACGTTACTGGTCAAATGTAAGGTCTTAGTATACCTGATGATTGAATTTAATCGA CTCTCTACCGGAGCTAGCATCAGACCAAAGATCAAGTAAAATAGGAATTCTGGGGCCCGTTTCACAAAGC CTTTTTTCAATGACAAATGACAAAAACCAGTGACAAATCTGCTGATAACCAATCAGAATCAAGGATTACA CTAGCTTATAACAAAAACTGTCATTTGTCACTGATGACAAGTTTCGTGAAACGCCCCCCAGAAGTCATTT TATGTTTATGAAACAAGGGCACCTAGTGATGTATGGGACGCTAAATGATGAACTACCATGGACTTGTCCA CTTCTAATGTAGTCTTTTATGTATTGTGAATTTATTTCAAGGTATGCTATGTGTAATCCGGCATATCATG TGCACACTGGCTTTGATAGCGGTATTGTATACGCCCTGTTTGTGACATGTATGTCTTGACTATGAATATT CTTTGGCCTTCTGGGCCCATTCTTATGTGGCAATATGTGAATGAATTATTGTTATATACCTAACTGGTAA TAAATTGAATCTTTGTGGGGTGAATATACGTATATGTATAGACACACACAAGTCTTTTAACCCTGAACTG AAATTGTAATTGTGTATTCATTTACAGTACATGTAACAATACACCCCCATTGTTCAACGAACTACACTGG CTCCCAGTTACCGAGAGAATACAATAGCAGATGCTTGTTCAAACTTTAAAATCTTTATCAATCACACTTC TTCCATACATACATTTATATCTCCTCACTTTCAGCAGCAGAGAACATCATATTCTCTTCTATCAGTATCT ACATCAACTCCTTCCTAATCTCGCTCCCAATCCTGAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds