Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111816.1 TSA: Strongylocentrotus purpuratus WHL22.446108.3 mRNA sequence GTTCGATAAGATTTTCGCTGATGCAGTCCAAAGGGAGATTTTGCATGTCTTGAAAGTACAGCGAACTACT ATACTATTTTCATTGGAGTTACAATTTTGTACGGAAGTGATATTATTGTAGTCAATGAACGAAAGAGGGG ATTGCTGAATATTGTTCACTCAATCATCCTAATCAGTTAGGATCCTAGGAAGATCTCAACAAAGATGTCA CTCGTCACAGTCCAACGGTCTCCCAGCAATAGCAATGCGAGTTCGACCATTTCGACTCTGGATAATGATG ATGAAGCTGAAGAAAGACTAAAAAGAGGATGTGAGAGCTTCTTCGCAATGAAGGGTGCAGCCATAGTCCT CCCGCACTCCAAAGATACCAAACGACCCATCAAAAAGCACCCAGGTTCGGACCCCTCTTCCAGTCATTCC GCTACCCCTATCGAACTCAACCTCATCCCCTCCGGGCCCCCTCTTCCAGAAGCTCTGGTTGGAGAGTTGC AGCAACATTTACAATGTATATTCTGGATCCTGAGGCCAGAGGACACCATCAAAATGGCTGTCAGACTGGA GTCATCCTCGGACAACACCATCCGTTACATGGTGCTGGTCTCCTGCTTGGATACGCATCAGAACACAGAG GAGACCATCATCCTGGGCATGGATATCATCCAGAACAAGGCCACCATTGGACTGGTCTTACCCATCTGGG CGGATAGCATCATCCAGATGGATGGAGATGGAGGATTCTCTGTGACCACGGGGGAAAAGATCAACGTCTT CAAGCCAGTCTCTATACAAGCCATGTGGTCAGCGTTGCAAGCCCTGTACAGAGCGTGCAACCTGGCCCGG GTGCACAACTACTTCATCGGAGGCCTTCACATGACGTGGATCGGCTTCTACCAAAGCAGCGTCTCATCAC CTTACTACTGTCTCAAGGAATGGGAGTATCTTCCAGACATGACGTCCCCACAGAGTGATGAAATCAACTA CCTTTACCACAGAGACCGTCGCTACTGTCCTACAGAAGATGAACTGATCAGAAGATTTATATTCGTCAAG TTAAAAGAAATCATGATTCAATGTGACCTTGAAACCGTTACCTCAAAAATGGTCAGGATTAGTCTTGAAA AAGAGATAGGCAAGGAGTTGAAAGAGTACAAGCGATTCATTGATAAACAGATCCTTCTTATCTGTGGCCA ACTCGACTCTGCTTCAAAGATATTTGACCATATATACTTGGGATCTGAATGGAATGCGTCAGATCTTGAT GAATTGGAGGAAAATGGAGTGGGCTACATCTTAAACATCACCAAAGAATGCGATAACTTCTTCCCTGAAC GTTTCAAGTATTGCAACATCCGCCTGTACGACGATGTGGAGGAAGACCTCTTGAATCACTGGAATACCAC CTACCTCTTCCTCTCAAAAGCCAAAGAGGCAGGTTCCAAGGCTCTAGTTCACTGTAAGATGGGAATCAGT CGATCTGCTTCAACGGTAATAGCCTACGCCATGAAGGAGTACGGGATGACCTTGGAGTATGCCTTGGACT TTGTCAAAGGGAAGCGATCCATCATCAGACCAAACGATGCCTTCATGAAGCAGCTCCAGGTCTATGAGGG CATCCTAGAAGCAAGTCGTCAGAGACACACGATGTTCCGCAGTAAATCGGAGAGTTCCCTGAGTCGCAGT GAATCCGTGGAGTGCCTGGCAAGTGTCAAACCTCCTGAATTTGGCAGCACTGAAGACCTCTCACCCCGAG GTATGCCGAGAAACAAGTCTTTCTCTGTTCGAGAGAGAAAGAAGAAGATAGAGGAGTTGGACTCACCCGA GGGTGCTGTTGGAGGACCATCATTCTTCATTGGACCGGATCCAACTCACCTAGGAGCAGGAAAATATGTG ATGGACACTGGTGAGCCATTGTGTGAGGGTGCTGTTGGTAACGACCCTGGTGTCAGCGATTGCAACGATT TCCAGGTCTTAGTTCCCCCGACGGTCAGACCGAGCTCCATCGTCAAACTGCAGAAGGAAGGGGCATTAGC CTTAGGGGATGTCCCTTTCGTTGTCGCGACTGAACCTGCGGCGTTGTCGTCTACAGTACTGTCCTCCTCT AAAGAGCTGGTGAGTAGTGAAGCGGACACTGTGGAAGGCTCTAGCATGGAAGATACCATGCTGAATACGA ACAACAATAGTGCGAATGAACTCTCCTTAGATGGCTCTGATGAGGATATGTACCAGAGGACAAGCGTCAA GTCAAAGGTCACTGAAATAGAAAGTAGTGTAATGGGCGCAATGGACGCAACTGAAGAGGAAGGTGAGGGG GAAGGGGAAAGTGAAGTAGGGGCGTACAAGAGGGAGTCGATCCCTTGGAATCCTGGAACAGTACTACGAC AGAAGCAGGAGATAGAGGAGAAGATGAGGGACGGGAGTCCTACGTCGTCAGTGTCAATGAAGTTTGATGG TGAGGGGGAGGAAGGAGACGAGGAAGGGAGATCAGAAACACAAGTTGTCTCGATCGTGGATGAGCTGGCC TCATCTGCAACTGGGAGCACTCAAGATGACTTGATTGATTCACCAGGAACAAACCGTAAAGACATAGATG TAAATAGGACTGAATGTGGAGAGTGTGAAAAGAACCAACAAGATGGGGAAAATTGCAGTGTGGACGATGC AGAGAATGCCTCGGCGCCTATGGATGTTACTGAAACAACAGGCGACAACAACAGATCGTCTGTCTACACC ACTTCGGGCGAAGAGATCCAGCTCTCGATGGGGTTGGTGGAGCGACATAAGAGAGAATTTGAGCAGAAGA CTGCAGCGGAGGTGCTCCAACAGGACACAGAGACCGATGCTGCAGTGGATGATGCAACAGATTTAGAGGG CGCTGCTCAGAGCAGTCCTGGTGTGTGTGAACCGTTAGAGGAAGAGAGAATGGATGTCCAGGAGGAGGGT GGTTGCACCTCAACGGCATATCCTGATGAAGCCAGCGGCTGGAAAGTGGGAGATGTGAGGAGACACACCA TGGAACTTGAAGAGAGGATGGAACTGGCTTCATCACCAAGTCCGACCAAGAAATCAGTATTCTGGCAGGA TCGTGACGGAGACGAGCAATCAGAGCTGACTAGCGAGGAGCTGAGAAACATCCAAGAGATGGACATTCCT CTCAGATCATCCAGTCCTGATGGTGTGACGATGGAGGCGGAAGCAGGGGAGTCAGAAGTTCTGGTGGGCG TGGCAGAACAGGTCAAGCAACTAGAATTGAGAAGATGCCGCTCCATAGCAAAGATGTCCAACGAAAAAGT CAAGACTTTGAGAGCATTGATTGGAGTGGGGGATGAAAAGCCTGTCAGCGAGTCTAGCTCATCAGCAGAA GCTACGTGCAAGTCAATGGCAGATGAACCTCTGGTTGAACTGAATCCAGACACGGTTAGACTCTTTACCA GTCAGATAGGTTGCGAGGTCACGCTAGACCAGAAAGCGGCGACGGGAGAGAGAAAAACACGGAAGAGCGA GTCAGACAAGGAATCGCCCAGCTCCTCAGGGTCAAAGATCAAATCGCAACATGGCCCCTCCCATCCCTTG CGCAAGCTAGCACAAGGGGGTGCAACAGGGCGGGGCACGCGAGGGAAATTCTATAGTACCATGTGATCAT TTACAAAATCATTGTCTTCCATCCGTTGATCAAAAAGTGCTCTGTACAAGTGTGTGTCTTACTGTGTAGC TCTTATGTTTAGATTTCCTTTCAATAGACAACGCTTTTACACGTATGTCAAATATGATGAGATATAAAAG CTGTACATTCAATGTTCGATGGTTGGATTAGATTATTTCTACTGGAAACGGCAGGGACGTGTCGCAAATA TATGTTGAAATAAATTGGTTTGTGGTAATGCACAGTGTTGGTAAAAGCCAAAGAGGTCAACATATATTTC TTTCTTCCATTTTCTCATGTTTGGATACACCTAAGAAGAACGCAACCCAGCTATTATAGTTAGCTTCGAT AGGCAGGATTTCTGAGAAATCCTTTGTTTTGTGGTTTTTTCCAGTATTGATCCCATTTTAGAAATTTATA TTTTGTTAAAGCTGATACAATATCTTGTTGAGATAAAATGAATTGCAGCTGAGCTTTTAATTCACATTGA TAAACTTCAGAAACAAAAATTTTCCACAAGAGAAAAGGGTATTGTAAGAGAAAATACTTTAATAGATAAC CCCAACCTATGTTATCATTTCTTTGCTTTCAAAGCTAGTTAAGGAGACCTGGGCCCCATCTTATAAAGAG TTGCAATTGATTTGAATCGATCTCAATTTGAAATTGATTGCAACTCCGTACTAAAGAGATAGGAGATGCT TTTGACATCAATTGCAAATTATATGTAATCAGTGGCAAATATTTTATGAGACGGGCTCTGATTTTCGATT TGTCATAAGCCAACCAAAGACATATACACCAAACAATAAGACCTCATCCAACATTGTGTATTACCCTAAA GCACCGTCACTCCTTTTTAATATGAATATATGGCATATCATTTGTGGAAAGAAAACTTCTTTTTTGATGT TATCTGTTCATGCATAATTACATATGAATAAGTCAATGAATTAAGTGTGAATTTTCTTTTCCTTCTTCCT CTTCTTCTCCTTCATCTTCTTCTTTTCCTTCTTCTTCTCCTTTTCCTTCTCTTTTTTCTTCTTCTTCTTC TCCTTCTCCTTCTTCTTCATCCTTGAGGCAGAAATATTTCTATATTTCCATTTTCACCCTCTTTTTCTTG TCACAGTGCTTCAGATTTAAAAACCTGAAGAATCTTCCCTCTGTTATATTTATTGCAAGGATATCTATGT TCTTTTGAATTTACTGAAATCTTAATAATTCTATGAAATACTGATCATGCTAAATCAGGCTGGTTATTTG AGGATGTTTTTGCACTCTTTTGTTATATAGATTATATGAAAATGAAGGATGTGTCACATTTCTTCAAGCA TTATGGGGTTGAGACGCTACAGAACTATTCAAAGATAAAAGTTCTGTGTGTAGTGACATCTTGAAAGTCG CAGGTTGTACCTATGTGTAGACTGTCTGCTGTGAAGTGGTGCTAGGACATGTGTGTTCAGAAACTATGAA AGAATGTGAAACTATATGTTTATTCTTAAGTGGTATGAAGTGAGGTTTCGACAAGAGATTTAATGTGGTC TAGTCCAAGAAGGGGTTTATGACATATGAATTCATAAGCTTATGATGTTAAGGTACTGTTGTTGTTTACA TGTACATCATTTTGTGATTTGTGACAAGCTTTAGCTCATTGTGTAAGGCTTGACTGTGTGAAAGATGCGA TGGCTGGTCTTCAGTCTATTACTTTTGTCTGGTAAATTGATTTGTTCATGTTTCTTTCATCTTTCAACAT TAATCAATGACATGATGTAGGCCGAGAATCATCCATTACCACATGCTTAGAATGATGTTGGGATAACATG TCGTAAGAATACCTATCATCATTATGCAGTATGTCTTTGTAATAATGAGCATTTTCATGAATGTTACTGA ACAATTAGCAATAATCAAATAATAATTAATGATTTCTAAAAATATGAAAAGATAATATGTATGTATGTAT AAAATTGCCTAAATTGACTTAATAATATTTCTTGTAGTTATACCAATTCTGACCTTCCGCTAACACTCCA AAGTTAGGTATTACTAGAAATATTTGACGAAGATGAAGATAATTCCATTGAGAAACTCTGAAAGACCAAC ATGTTTTGACTAATACGGATAACCATGTTTGTTTTTGTCTCAGTCTACTTTCAACAAAATAAATGATTAC AGCCTTTCCATGCAGTATATTAATAAACAATAATTTGTGTGTATTTGATTTATTATAATGATCAATATTA TTCTTTCTAATTACATTTCTCTAAATGTTGATTTAGAATTAATAAGCTTTGACCAACTGAAAAAACAGCT CCGAACTTGCCTCCCTTCAGTTGATTTAAAGCAAATAAACATGATTTACATGCATAGGGTAAATAATGAT AGGCTAAATGATAAGTATGGTAAATTACTCTTATAATAATATTGAAGATTTTTGTTAAATTATCACTCTC ACAATTTTTCTCCCTGCTCTCTCTCTCATTCTCCTCTGTCGCACTCTCTATCTTGCACTTCAAGGGCATC GCTCTCACCTGTCCTTTTTCTTTTCCAGTTTGAGATCGAAAAGGGGGCAGCAAGAGGCTCACCCCCCCCC CCCCCCCCCCCAGTTTTTAGGTTACTCCCATAATGTACTTTGCAGGTGACCCCATTTTTCAAAGGCTTGG ATTTGTGACTATTTTCCCTTAATGTTTGTATTGGTTTACTTTTGCTGCCTAGTGATTTGTTGAAAATTCA CTTGTGACCCCTTAAGTGGAGATTACAATTTGTTACGCTCTTTTTCAGTCTTCTAATAAATCTTGCCAAA TATAGTCCTGCTTCATTTCTTCTTCCTTATACATCCCTTTTGGTACATAATGCTTTTTTTATGATTGTAT TTATTAGCTATTTTATGACATATCATACGTGGTATATTCTGTAATAGTATATTATGAAATAATAATGAAA GTTTTGTTTGATAAGACAAATTTATGTATTTCATTTATTGGTATTGGTTGTACATATACATAAATGTAAG ACAAGCATATACAATTGTATATATTTAGATTTTGTTTATTTTGTTATTGTATCATATACAACTGATTGTA CATATTAACAATGTCAATATTATATATATAATTTTATCCTGATTTTTTGTTGGTATCTCGACACTTTGTT ATGTGTATTGACCACCCTTATTCAATCACATGTCTGGATGGTCTTAAAATTAGCAACGGATTCCTTTGTG ATGAATTCATACTCATTATGAGTTGAACCATACTCTTGTAAGAGCACATCTTTTGAAAGCCGGAAGGTTA TTACCTTTGTGACACAGTCCTTATACATGTACATGAGTTAATGTCTTTCTGGTTCCCAATAGACGATATG AAAGCCGCTCAATAGCTCTTGTACGTTGACCTTTGACCGGTTCAGTACTGATATGTCACACGGCTCATGA AGGCTTTCCATGAATGTGAAGAGGTTAGTGTGTTTGCAGTCTGAAGGGGATGTTTGACTAGCTCCACCCA TAAGGTAAGGAGTCGGGCCTACTTGGTGGGGTAGATTGGCGGGGCGGGG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds