Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110460.1 TSA: Strongylocentrotus purpuratus WHL22.604820.0 mRNA sequence CTGATAACAAATTATTTTATGCGGCGAAGCCAGTGCGAAGTAAGGTGTTTAAATTGGATGGTCAGCGTTA CGAATTTTACTGCAGAATACCTGCTCTTCTCCAAAGGAATATCATTTTCCGGATGTCATCGCTCTAAAAG GATAATAATTAGGGATACACACGGAACAGCTGCTTGCTTGACGACAGTCGGTATTTTCTCCGAGCGTTAT TTTTATGATAGGCGGGGCCTTCTCCTCACATCGAACGCAGCGAGCTAAGGCGGGTGGGCTCACCAAAGGG AGATGCTGTGTGGTCAGTAAGCGATCGGTAGCTCTTCCGGCTTGTTACACGTAAACAATATAGCCCAGTG GTTTCTTTTGCACTCCTAATATAATATTCTCGCCTGTTCATAATTTTGTGGAAGCAGTACTCATGTTTTC CACATTCTGAGTAACTTGTTGATTATCACTTCCCCTTGCCGAATCATTACGAAAGGATATCTGATTAGAG AGAGAGGAAGAGAAAGAGACAGGTCGAAGAAGTAGACTCTATTGAGAATTATAGGCCCGTTTACGCGTGT TGTGAATACGCGAGCTTCAGTAGCAGTGGAATAATCATGTCGAACGCCCGTTCTTTCTCTCCCAGCAGCT CTGGACGACCCGACTCTAGGACTATGGCACGTTTTCTGCTGCTTTCTTTTTGTACCACATTAGTTATATT GGATAGTACAGTTGCATTCAATTTTGATCTGAGGGCACCTGTGAAATTTGATGGACCGCAAGGAAGCTTG TTTGGGTTCAGTGTGGCACAACATCGAGATCAAAATACAGATTGGGTTTTAATAGGAGCACCAGAGGCCC CTACCACCCAGCCCGGTGTGACCAATGGGGGCGCCGTTTACAAGTGTCCCGTCGCCCCTCTCAGCGGCAG CGGCCCATGCGAACAAGTTCCCTTTGATACGACCGGTAACACAGAGGTCTTGGACAAGTCTAACCAATGG TTCGGAGCTACGCTGGCAAGCTCTGGGCCTGACGGCCGCATCCTGGCTTGTGCTCCTCGACTAGTCTGGC TTCAGACTTCCACTAGTTCCCCCACCGACAAGGAACGTGAGCCGACGGGAACGTGCTTCGTCGGACACTC CGATTTCACCAACTTTGTGAACTACTCCCCGTGCCAGAGAACAGAAAGAGAATTGTTTGGATTTGATAAG ATCACCCATTGCCAAGCTGGATTCAGTGCACAAATACCAAGCGATAACAGTACATTGGTCATGGGAGCTC CTGGAAGCTACTATTTACAAGGTCAAATCTTTGCCCAAAGTCTCTCCACATTAAGTGATGTAAGCAACAC ACCGGAGCAAGCAGTGGCATTTGATAACAGCTACAGGGGTTATTCCCTCGCTCTTGGTGACTTCAATGGT GACGGACTTGAAGACTACGTTGTGGGTACACCTAGGGGGGAGTCTCTTCGGGGACTGGTGGCCATCTTTG ACCAGAGTTTGGTTGAGATCATTACCCCTGTTGTTGGGGAGCAGATAGTCTCCTATTTTGGATACAGTGT TGCTTCTGTTGATGTCAATGGCGATGGCCTTGACGACCTGCTGGTAGGAGCACCCATGTTTACAAACCGT GAGCCGGCTACAGAGAAGTGGGAAGCAGGACGGGTGTACGTGTATCTACAGAACGCAGATCATTCCTTAG GAGCTCCTCAAATGCTGACAGGAAAGAAGATCAGGGCTCGCTTTGGCTTCTCTATTACATCCATCGGTGA CTCAAACCAAGATGGATTCAATGATGTTGCCATTGGAGCTCCCTATGATGGTGAGGACAACTCAGGGGTT GTTTACATCTATCATGGCAGCGCAGAAGGACTTAGACTGACAGAGTCTCAGGTGTTGACCCCATCCGAAC TTGGCTTCAGTGACATCACAACGTTTGGTTTCTCGGTCGATGGCGGACAAGACATGGACCAAAACGATTA TCCCGATCTTGTGGTTGGGGCAGAGAGTGCGGACGCTGCCATTCTTGTAAGGACTCGACCAGTGGTTTTG CTGGAAGCGGAACTCACCATTGAGCCCATCGGAATCAACCTTGACAACAAAACCTACGAGCTTCCTGACG GTACCATGGTAACCAGTTTCGTTGCTATGGCGTGCTTCACTTACACCGGTAATCATCTTCCTGCCCGCAT TGGCATCAGCTACACCTTGACGGTGGATTCTAGTATCACCAGCGGTAGAAGGGCGCTGTTGGAAGTCAAC GAAATGAGCCAAGTCACAAAGAATCGAAACCTCGACGTTGGGATGAAGTTCTGCGACCCTCTCCGAGCAT ACGTCGTGAACACCATCCAAGACAAGCTTACTCCCATCGCTGTCGATCTTCAGTACGAGCTGAACCCGGA TGAGTCCATCCTCCTGCCCTATGAGATCCTACCCATCATCAACAAGGAGGCTGTGTCTTCACAAACTAAG CAGGTGTCCATTCAGAACAACTGTGTCAATAACATCTGTATCCCAGAAATTGGCATCACAGTCACACCTA ATCTCCCGAACATTGTGATCGGCCAGGCCCAAGAGTTGACTCTAGTAGTATCCATAAACAACCGAGGGGA AGATGCGTTCCAATCTACGCTCGCCGTCTACTACCCGGAAGGGCTTCAGTATGTCAGGCTGGAGAGGAGA GCTAACATGGACTTTTCTGTTACATGCACTGAGGACTCTGCTCTTCGCATGATCACCTGCGACACAGGAA ACCCATTGGTCGGCAAATACAATCTTGAATTTGGCCTGACTTTGTCAACCTTGCAAGTCAGTGGAGATAA AGATAACATTGAGTTCTATCTGGTAGCCGGGAGTGAGAACAATGAGGATCCAAACACACTAGACAACAAT GAACTGAACGTGACAGTCGCTGTTACTGTAGATGCTACCCTCAAGTTGCTCAGTGCGTCTTATCCAGAAA TTGTGACTTACCGTGTGCCAGAAGACAACATCGTACCTGAATTCCCAACCAAGAATGCATCAGAGGCTGA CATTGGCATGGAAGTGGTGCATCTTTATGAGGTCCGTAACACAGGCTCAAGCAATGCTGCCGAGGTCACA CTGAACATCAGATGGCCCGAGAAGGATGAGAACGGAGACTATCTTTTCTATCTCTTGGGAATAATGACAG ACGAAGGGGTGACGTGCCAGATCTCTCAAGGACAAGCTAACCCACTGGGAGTCAAGCTCGAAGCCAGCAC AAAAGAACAGCTCTCCAACTCGACGACGCAGGTCAGCGGTCGCCGAAAACGCGAGGGGGAGTATGCCGAA GCTCTGGCCCAGGCAGAACCCATTTTCTGCACCCCAGAATCCTGCGTTCTCATCAACTGCACCATAGATG AGATCAAGGCCACTAAGAGCAAAGTGGTGCGGATCCTGGGACGCTTCTGGGAGAGGACATTCCAGAAGGC TGTTAGCGAGGCGGTGCCTGTCATACAAGTAACCTTAGCATCTACTGCAACTGCTACCGTGAGGTCGATT CCTTACAACATACCCCTCCCCATGGAGTTCACTGACTCAACCAAGGCATCAACGCTGATCACAGCTGAAG AGTTAGTGCTTCCTCCAGTCAGCATCGCCTGGTGGATCATCGTAGTGTCTGTGCTGGGAGGCATCATCTT ACTCCTCATCATCATCTTAGGATTATGGAAGTGTGGCTTCTTCGAGAGGAAGAAACCTGGAGAAGACCAG AAGGAATACGAGCCGGTCGCCGTCACGGAGAAAGACGGTCCGCCCGAGGATGTATGACGCACCAGACCGC TCGTCAGCTAACTCTACACCTTCCTAGTCTGTTCTTATTGATATGAATCTTGTCCCTTGTTTGTGTACTA TAATAAAAGTATTTCTTCTTCCTGGCGTGAGAATGATTGCTAGAGGTCAAAGGTCAATGACGCATCTTTG CCGAAATACGCCCGTAAGTGAGCGATGTTTCTTCAACTCTCTCTTTGCCAAGAACCTAACAAATTGTCGG CTATAGACATGGTACAGCGTATACGTGATGTCAACAATGTTAAAGCACTACATCTTGTTATAGCTTGTAC TTTTGAAACGGTGATAGAAAGTTGTGCTTCTGCACCTACTGAATGTGAATAGCCATGATGATTTTTACTA AAAATGAAGGTCGTATAGAGAGGTAGAGTTGAAGGACCGAGATGTTTAAAAATGAGACCAAAGTTATGGA CTGTAAGCAGACTTTTGAGTAGCTACATGTAGCTATGTGTGATTGGTAAATGTACAAATTAGTACAAGCA GAATACATGTAGTTTTGTTGCGTGCTCAAAAGCAAATGAGCCCAGACATCGCTCAAATTGATAATGGTAA AATGGAGCTTTGGGAACGGAATGGAATTGGATTTTATTTCTGAAGATGTTGCACTGGGTTATCTTGGTTT AAAATAGGCAGGAAATAAAGATGAAGAGTGGTTGACTATGTTTCAGTCGTACAACTCTTGATTTATCTCG AGTTTTATCTTGATAAATTCCAAATGCCTTCATCTTCTTCAGACGTGTGAAAATGGTAATGGTTTTAAAC TTAAAAGTAATTAAGTCTGAATTTTGTAGCACACAGGTTGTCTCAAGATATGCCAATTATGCTTTGAATC AAATCAATGAACAGTTGTGATTCATTTGTGAGATTTATTATAAAAAGAATCACATAGTTGATTGATGGCC TTGAAATGCTATCTATCTGAGAATGTGTGTTGTGAGTGATATTTATTCATCATGTGTATCTGTAGATGAT ATGTTTTTGAAGAAACTAAAACAAGCCTGAAAGTAATCATGCTATGTTATCAAAATGAAATAAATGTATT ATAAGGGTTATTATATGGTCTATCTGTAATGATTAGGATATGTTTTATTTAAAGGTAAAGATCAGTTTTG GAAACGCCCCCCTCTCAACAAATTAAATGGAAGCTCTTATTACCAATCATGTGAAAGAATATGTTTTGAC TATACAAATGATGATACAAATTTTGCCAAGAAACCGCCTACTACTTGATATATTTGGTAAATTATTATAT CTATTTGGACCTGATAAATATCGTGCACGTGTTGCATAGTCCCATATACATCTTTCTGTGTATAGTGCTT GTAACTTTACCAAGACAGGGCCAAATTTCTTATCATTTTGATGCCAGAACCTTGCAGTACACACCAATAC TTATATGCTAGATGATCAACCTTTTCTGATCGATTCCACAACGTTTCTTTCACAATGCAATCGCATGACC AGAACTGATCTTTATCTTTAAGATAGATATCATGAATAGACATTGCAGATTATAGGACAAGGCAGCGGCT TGATTCAAAATTTTGAAGGTTTGTAGGTCTAAACACTAATTCAACTAACACACTCTTACCCAGGGTATCA TTAAGCAGAAATTTGTTTGAACTGAAATGTCATATTTGTAAGTGTATTAAGTACGAAGCAACTCCTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds