Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990582.1 PREDICTED: Strongylocentrotus purpuratus NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial (LOC582178), transcript variant X2, mRNA TTCGTTTAATTCAACCATTACGTGTGTAGGCAGTGCGGGTTGTGTAACTCCATTGCCCCGCGACAAAACG GCCGATTTATTACCAGAAGACTCAAGGTTCGAGCCCATTTCTACTTTAGCGTCGAAACAGTTTGATCCGA GGGACCGGAGGGTATAATTTTTCATCACTCTTAGGCAACAGTGGTTTTAGTAGAGGTTTATATTCGTGTT GATTTGTCGTCTCCTCCAGTCACCATGTTGAGGGCACCAGCTTCCAGGGCGTGGTCGGCAACCAGGGCGT TGCTGAAGCCCACGTCCTCCTCCCGTATGGTCTCCACCTCCTCCCCTGCTTTGGAGAAGATCAAGGTCTT TGTGGACGATCAGAGCGTCATGGTAGAGCCAGGAACTACAGTCCTTCAGGCTTGTGCTGAGGTTGGAGTC GAGATCCCTAGGTTCTGCTACCACGAGAGGTTATCCGTTGCGGGGAACTGTCGCATGTGTCTTGTAGAGG TGGAGAAATCAGCCAAGCCTGTTGCTGCCTGTGCAATGCCAGTCATGAAGGGATGGCGTATCAAGACAGA CTCGGAACTTACGAGGAAAGCCAGGGAAGGAGTGATGGAGTTTCTCCTGGTCAATCATCCCCTGGACTGC CCCATCTGTGATCAGGGAGGAGAGTGTGATCTCCAGGACCAGTCCATGGCTTTTGGGAGTGACAGGAGTC GCTTTGTAGACAACCAATTCACAGGGAAGAGGGCAGTGGAAGATAAGAATGTTGGACCACTCATCAAGAC CATTATGACACGCTGTATTCATTGCACAAGATGTATCAGATTTGCCAGTGAAGTAGCAGGAGTAGATGAC TTAGGTACAACAGGCAGGGGAGGTGACATGCAGGTTGGAACTTACATTGAGAAAATGTTTGCATCAGAGC TCTCTGGAAACGTCATAGATTTGTGTCCTGTGGGGGCGCTAACATCCAAGCCCTATGCCTTCACCGCACG CTCCTGGGAGACGCGTAAGATCGAGTCAGTTGATGTATTGGATGCAGTAGGTAGCAACATCGTCGTCAAC ACCAGAGCAGGAGAGGTCATGAGGATTCTACCTAGAATGAATGAGGAAATCAATGAAGAATGGCTGTCTG ATAAGAGTCGCTTTGCCTACGATGGTCTGAAGAGGCAGAGATTGACCGTCCCATTGGTGAAGAATGAAGA AGGCAACCTCGCACCCACAGACTGGGAGGAAGCACTTACCAGAGTTGCTGCTCAGATCTCAGAAGTTGAA GGAAATCAAATTGCAGCCATTGCTGGTGGTCTAGTAGATGCAGAGTCATTGGTATCACTGAAAGATCTAC TGAATGGACTCGGCTCCGAAGGACTATGCACAGAAGAAAATTTCCCAATGGACGCTGCAGGAACGGATCT GCGTTCAAACTACCTGCTGAACACAAGCATTGCAGGAGTAGAGGAAGCAGACCTGATCCTGCTCGTGGGA ACCAACCCCCGGTACGAGGCGCCTCTCTTCAACGCTCGCATCCGCAAGAGCTGGGTTCATAACGACCTCC AGGTGGCCTCCATCGGCCAACAGGTTGATCTTACTTACGACTATGAGCATATTGGGGACTCCACAGCGGT CCTGAAGCAGCTTGCCGACGGCTCACACCCCTTCTCCAAGACTCTCAAGGCCGCCAAGAACCCCATGATC GTCGTGGGTAGCGGAGCCTTCCAGCGAGCTGATGGTGCTGCCATCCATGCCTCCTTGACATCCCTCGCCC AGGCCGTCAGGGCCAGCAGTCAGGCGCCACAGGAGTGGAGGGTGCTGAACGTCCTGCAGAGGGTTGCAAG TCAAGTAGCTGCATTAGACATTGGCTACAAGGCTGGCGTAGACCACATCCGAGAGTCCAAGCCCAAGGTC CTCTTCCTTCTGGGAGCCGACGAGGGAACCATCACGAGGGACGATCTGCCTCAGGATTGCTTCATCGTCT ACCAAGGTCATCATGGCGATGCAGGAGCTTCCATGGCTGATGTAGTGTTACCGGGAGCTGCATACACAGA GAAAACTGCCACATACGTCAATACAGAGGGACGTGCCCAACAAACAAGACTGGCCGTGTCTCCACCAGGA TTCGCTCGCGAGGACTGGATGATCATCAGAGCTCTCTCAGAGGTCACAGGAAACCAGCTTGGCTATGATG ATATCGATGGAGTAAGGCAGAGGTTAGCTGACGTCTCACCAAACCTCGTACGCTATGGAGACCTGGAGGA GGCTAACTTCTTTGAACAGTCCAGTATCCTGGGCAAGACTGTGAGCACCAAACTATCCGAGCAGGCACTG CAAGTGAAGCAGACCACCCTAGATAAGTTCTACATGACAGACTCCATCAGCAGGGCTTCCCAGACGATGG CCAAGTGTGTGCAGGCCGCGGCACATGCGCAGCAGAAATAAATAGCGCCCTCATCGGAGAAACTGTGATA TTTATAATGCAACATGTATGTACAGAGAAGTTGTTATTGAATGGATGTTTTTACGAAGATGGAGTAAGGA GCAGAGCCCAATCTATGTCCATGACTGGTTGTTTGTGTTCAAGGAGTTGCTTGTAACACTTTGGGGAAGA ACCACAACATTTTAGCATGCAAGAAACTTTCACAAATGTGCTTTTGGTCCAGATTGCAGAAGTTTAATTG AGCACAACAATGGAAATGGATGCAAATTTGCATTTCTGAAAAAAATTGCATGTTTCCAAAAGTGTCAGAT TTTCACGGTATTATGGACATACTAATGATTTAGGTCCAAATGTGATGCCAATAAGGACTTTTTTCCATTG AAATCATGAGAAACTGGCGAGTCTCTGCTAGTTCAATCATTTATATTCTTGAAACCCTTCAAGGCTTCTT GTTGCTAGCCCTCAATAGTTGTTTTTCATAATCTGTAGAAGATCAAACCAACATAATTAACCATTATTCT GTAGAGGGGGATAAAAAATAACTAACGAACTACAGTACAGATTTAATTTCTTGCAAGTAGTCACTTTGTG TGATTAATGAATGAGAATATCTCTTCAGAAGTCGGGCTCAATTTCTGACAAACAAGGAATGTATCTTACA CGCATGAATTGTGATATATTTATTGTTGATGTTGTTAGACAATGTTCATAATAACTATGATGAAAGTATC GATTATATAGGGGCATTAACAACAAAATGTACCATAGCACTTACAAAAACCCAGAATGTGAAGAGAAACC TAGAACTCATAAAATAGGTAAAACATATTACATGTGTAATTACAGAAGGAGGAAGAGATCTCATGCAAAC ACATCATTAAATATTATTGGCAAGGATTGAGAGATTGCATTTCATCAAAATTTATTGAATTCATTGATTC ATTTTTACAAATCTTTTCTCCATGATCTTGAACTTTTAATCAAATTACATATTAGTCAGGGATTGTTCGA AACTTGTGTAAATACAGAGTTAATTGTACAAAACAAAAGTCTTGAAACTTTGCAGTGAGCTGCTACGTCA TTTCAGTCTCTGTGATGTCATAGAAAATAAACAAATGTTCATCATTATGATGAAGTTACAAAAAAAAACA ATGAATTGGATTGTCTGAGAGGATATTATTCCCATTTTGTCCATCCGTAAAGAGATATATTGGATTGTGG CACTGAATGTAATAAAAGTTTCTTGATGAAAACTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds