Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990557.1 PREDICTED: Strongylocentrotus purpuratus myosin I gamma (LOC373223), transcript variant X2, mRNA TGGTATGTTTCCAGTGTTTCGAAATGAATTAGAAAAGTAGGAGCAGGAGGGACGGTTTTGTCGCAAAAGC TGGAATAAAGTTGGAACTAAATCATTATGGCTCATCAGGAGAGCGCTCAGTTTGGAAAAGGAGATTTTGT TCTCCTGGATGAAATCTCAGAAGATGCTTTCATGGCGAATTTGAAAATGCGATTCCAAAAGGGGCGCATC TACACCTACATCGGGGAAGTAGTGGTATCCATCAACCCATACAGAATGGTCAACATTTATGGAGATGAAC AGGTCAACGACTACAGAGGGCGTGAGATCTACGAACGCCCCCCTCATATATTCGCCATCGCGGATGCGGC ATACAAAGAGATGAAGAGGAGAGCAAGAGACACGTGTATCGTAATATCAGGTGAGAGTGGATCAGGCAAG ACAGAAGCCTCTAAGATCATCATGAGATACATCGCTGCAGTCACCAATGCTAGTCAACAGCAAGAAGTAG AGAGAGTGAAGAATATCTTGATCCAGTCCAACGCACTCCTCGAAGCCTTTGGGAATGCCAAGACCAACAG AAATGATAACTCGAGTCGCTTTGGCAAGTACATGGATATCAACTTTGACTTCAAAGGAGATCCCATTGGA GGACACATCAACAACTATCTTCTAGAAAAGTCAAGAGTTATACACCAGCAGAAAGGAGAGAGGAATTTCC ATTCTTTCTATCAGCTCTTAGTAGGATGCACAGAACAGATTCTCAAGGAATTCAAGTTAAAGAGAGATCC CAAAGCCTTCTTCTATATCAACCAAGGAAATGGCGCTACAGGTTCACAAGTAGGACATGACAGGAGAGAC TACAAGGCAGCGCAAGAAGCAATGAGGGATCTAGGTTTCACTCCTGAGGAACAGAAGACTGTTTGGACCA TGGTAGCTGCCATCATGCATCTGGGTGAGGTCGACTTTGAGGATAGTTCCGACAAGGAGGAAGGGTCAAA GGTCAGGAACAAGGACGCCATCAAGACTCTTGCATCTCTTCTCAAGGTCAGCAAGGATGAGCTAGTTCAG GCGCTATGCTTCAGGGTCGTTGCCGCGGGGTCAACCGAGGTCGTTCATAAAGGTCACACCAAGGAACAGG CGTACCATGGAAGGGATGCCTTTGCCAAGGCCATGTATGAACGTCTCTTCACTTGGATCGTCGGCAAGAT AAACAGCGCTATTGAAGTCAAGGGTACAGTGAAGGATCATGGGAAGGAAACTGTCATCGGTGTGCTGGAT ATCTACGGCTTTGAAATATTTGATGATAACAGCTTTGAACAATTCTGTATCAACTACTGCAACGAGAAGC TTCAGCAGCTCTTCATTGAGCTAGTCCTGAAGCAAGAGCAGGAGGAGTACCAGCGGGAAGGCATCGAGTG GACCAACATAGACTACTTCAATAACTGCATCATCTGTGACCTGGTAGAGGAGAACCATAAAGGGGTCATC GCCATCCTCGACGAGGCCTGCCTCAACGTGGGAAAGATCACTGATGGGATTTTCTTGGATGCAATGAACA AGAAACTGTCCTCCCATCCTCACTACACAAGTAGAGCTTTGCAACCATCTGAGAAGAGTCTAGAACATGG CAAGAACTTCATCATCAGGCATTACGCTGGTGATGTCACATATGATGTGACTGGCTTCATGGACAAGAAC AAGGATACTCTCTTCCAAGACTTCAAACGTCTTCTTTTCTCCAGTGAGAACCCGACTATCTCGTCCATGT GGCCTGAAGGTCAGCAGAAGGTCACAGCGGTAACCAAACGGCCTCCTACTGCTGGCACAGTCTTCAAGAA TTCCATGATAGAACTAGTTAAGAACCTGGCATCAAAGGAGCCTTTCTACGTCCGATGCATCAAACCAAAT GAGGAGAAATCACCGCTCCTTTTTGATGACTTGAGATGCTTACATCAAGTAAGGTATCTGGGACTACTAG AGAACGTCCGGGTGAGGAGGGCAGGCTTTGCATCAAGGCAACACTACCAACGATTTCTACTCAGGTACAA GATGTTGTCAGGCTACACCTGGCCCAACTTCCGAGGGGGAGACGACAAGCTGGGGGTCCAGACTCTGGTC CAGGAACTCCAGCTAGAGCACGATGTCAAGTACGGCAAGACCAAGATCTTTATCAGAACCCCCAGGACCA TAGTCCAGCTGGAGGAGGCTAGGACCAGGTTACTTCCGGCGCTAGCAACATTCCTACAAAAGCTCTGGAG AGGGACACTAGCAAGATGGCGGGTGAAGAAAATCAGAGCAATCTATGTGATCATGAATGCGTACAAGCGC TACGTCCCACGGTCCTACCTGAACAAGGTCAAGGCAACGTTCGGCAGGGTCAAGCAAAGGAAGGATTATG GGAAGAGTCTGGAATGGCCCAAGCCCCATAGGTGGATGGTGCCTCTCTCAAAACTACTGCAGAGGAGTCA TAGGAGATGGATTGCTGCTCAGATCCTTAGGAACATCCCCAGTGAGGAATGGCCAGAGGTCAGACTAAAG TCAGCCGCTCAGTCAGCCCTGTCAGGTCGAAGGTCAAACTGGGGTCATCAAAGAAGATGGAGAGGAGATT ATCTGTCGTCTATGGATGAAAACTTCCAGTCTTCAGTGTATGTAGCGATGATAGGACAACTCAAGACCAA GGATAGGTTCAGCAACGTTCTCTTCTCATCAAAGATCCTTAAGGTCAACAAGCATAATAAGTTTGCTGAG AGGACACTAGTGGTCACTGATCGGTTCATCTACAAACTGGATCCCAAGAAGAACTTCAAACTCATGAGAC CGGGGACGCCTGTTTCAGAGGTGACAGGAGTCAGCGTGACCCCAGGCAGAGATCAACTGATCATAATACA TCTATCAGGTGACAATGACATCGTAGTGTGCCTTACTAATGATGTCAGAGAGAACCGGGTGCCAGAGCTT GTTGGGATCCTAGAAGACACTTGGGTGGACAAGCGTAAACGTGAAATCCGGACCATCGTCAGCAACAACC TGCAGTGTCAGCTGGGCAAGAAGCAACGCAAGATACGTGTCCAGCCGACGGGTGTTGATGAACCAGTCTT TCAGAGGGATCAGCATGACTTTATACTACAGTGGCCCAGCATTGAGAGCTAAGGAGACTGGTAACCTACG CCTTTAGTCTGAAATCCTTGTTAACTCTTAATCTCTATAGGTTTAATATATTCATGAAACTTTGATAATG GTCTGTTGATGCATGAAGTACCAAGTGTCAATCTCTTTATTCTTGAAAAAATCAAATTCTGTAAATTGAT GAATGAACAAAATATAATTCTGTTACACAGTAAATGATCAAATGAATCCTTTATGAAATGAAGATAAAAA TTGATTTAGTAATGACTTTATTTGTGTCATTTACCGATTTACAGGAGGAGGGGATGTAGGGCTTTAATTT AAAGCCTATCTGTACTAGTTTGGCCAGGAGGGATTAGACCTCCCTGGATGGTCACTGGCAGGTGGTTATC TCATCAAATCAGCTCTCCATTAACATAAGAAAGAGGAGACCATGGGGATCAATGGTCACCAATAAGGCAT TGCTTGCTATATAGAGGGCACAAGTAGCTATAAGTAGTGCAGTGGGGCTTTAATAGTCTGTTGATGTATG AAGTACCAAGTGTCAATCTCTTTATTCTGGACAAAAATTAATGTAATTCTGTAATTTGATGAATGAACAA AATAATTATGTTTAATACACAATCAATGAACAAAATGAATCCTTTATGAAATGAAGATAAAAATTGATTT GGTAATGACTTTTTGTGTGTTATTTACCGATTTACTGGAGGATGAGAAGTAGCGCTCCATAAAATATGTT GCCTTATTTTTCCACTTGGTGGGATTTAAAACAACCTGGACTATAGTTCTTACTCCTTTTTTAATACCCA TGTATGGATTAAAACAATGGACTGCCATATTAGTTGGAATATGCATGTACACATGTAGTTCCATTTCGTT TGTACATGTACTTGTGAAAAATGTTGATTGTGGCAGTCCACTGTTTGGTCCATTTGTCGACCATAGCAAG TGATGGGTTAAGGCATGTATATTTTCTTTTTTAGTTTGTATATTCTTCATTCATATGAATGAAACCATGT TAATCCTTTCCTAATGCCTTAACAACTGAATGATGTGACCATACATTGTATATATATATACAAAATAATT CCTTGTCTATATTTAGACGTGGGAACAACTCTTTCAAGTCTCAAAGACTTGAAATTATTTATGAATAATA TGTACTTAACCAGACATTCCAAAATCTGTGTGTAAGAAAGGTCATGTAACACATGTACAAGGTTGAATAT TTTGATTAATTTAATTTGATAAAAACTGTAAAATGTTGATGGAATAATATTGCCTTCTATCCAAGGACTA GTGTGATGAAATTGAGTCAGTAATGTCTGAATTGTTGACATACATACTTGTAAAATGACAAACTTGTTAT CAACTGCCTTAAAATTGTTCATATACATGTAGCTTATGAAGTCAGTGCAATCTGTATACGAACTTGTATA TCTTCTACAGTAATGAACAGTAATGTTCCTCAAATCAAAGTATGGTTCTGTAGTACGAATACATGTAAAT CACCTTGCACTACTAGTATTTTTATTTGAATGACTGATTTATGTGGAGTCATATACTATAGAGATAGAGC ATGAGTGGGTCCTTTTTAGGTGCAACTAACCCTGTCGAAAGAATAAGTGGTGCAACCGCAAACCTTGCTC AATTGTATTTCCCTATAGCATTTTGATCATTGCACAATTTCATAAGTTGGGCCAATAGGCTACCTACACG TGGTCCTCATTTTTGTGATGTTACATGTCATATTTAGAATATGAAGGTATTTGAAGAGCCATGCTTTTCA GAGAACATTTTTTTCCTGATGATCTTCCTGGCTTGCATAATAACAATGATAACGCTCACAAATTATTTTC ACCTCATCCCAGAACTCAACCTTCTCTTTAAGCTTCAATCTTTCTTAATTTGTTTTACATTTGTTCATAA TGATATACAGGATTATTTTCTGGTCAAATGAGTTGTGATAAACTAGAGAATATTATTCTCTCTGCTTCAA TGTGTGCTAAAATTGAATATCAGGATCGATTAAAGATCTGTTCAAATTGTATGAATTGTACTTACTAACT AATATATTGAATTATACGTAAACAGCTGTCATAAGTAAGATTAAAATATTTTAAAGTTTGTTAAGTTTCC GACTTTACAAACCTTAAATGTGAGATGATATTTCTGCATACATATGATTTATATGTAAACATGGATTTGT TGTTTAATTCATGAATATTCATGCTAATTATTTGCCTCGTCCTCCTTTTCTATTTGTTTCGATCTCATTA TGAATTGGACCATTATATGAGTTGTTTGCATTATTCCATTTAGCTTTTTTAATTTTCCTTCATGTATTGA ATATAAGTAGAATTTGTTAGATACTCACAGTGCTGTACATTTAGAAGGTTATATAATTCAACTGTTCTGA GTCAAAAGAGGATTATTTCATACTTTTACATAGAGTTTATACCTTTTTTCTCTCAACTGACAATGTGTTT CAAACTCAGTTTGTAGATGTGTTTCTTCATATCTTTTGCAAGTGATGATTATATTGTTTGGAGCTCTGTC TTATAAAACGTTGCGATTGATTAGGATCGTAAGTTCCTCCATTCGATCAGAAACTCACAACTCCTATAAT AGCCTTGGTAGAGCCTCTGAAGTTGCCATTGATCTATGTGGTAGATACCGTTCTTTTTACCATACAGCTT ATGTTGATGTTCATGAGACCGTCAATGTTGGTCCTAGCAATGTATTTAAGTGCATGATTTTGTCTTGCCA TTGGACGCAAAAACCCTTTTTCATTTGTTTCTATTCAATTACTTGAATATTTATTTGTAAGCTCTCTGAT ACAAAGTATCATGTAGATGTTAATGTGTCAAAAGTCATGAATGTGTTAAATATGTCATGCTTGGTAGTAC TATAAAGTGCAAATAGTTTTGTGTAGTTTATAAAAACTTGAAATATAAATGTATCTAACGTAAAGAACAA CGTCATGATATCAAAAAAGAGGGATTTATTTTTGAAATAATGATCAAAGAGAAGAAAATTTTAAAATCTT TGAATTGAACTAATCAAAGTTAGTTTACAAATATACTTTATCGCTGGACAATTATGCAAGGAACTCGCAT GATCATTAGGGTAATATGAAATTTTGTATTGTAGATTTTAGATGAATACCGGTATATTGGATTGATATAA TAGGCTATTTTGATATAGATGTACACATATACAAATATGCTTTATTGGAAAGTTGATATATAATTACGCA TTTGATTAGTTATACAGTACTCATTTATATACTGATTCTTTTTGATCAGTTTAAAAAATTAACAAGATTC ATGTATGCCTGTTGATTTTATAAAGAATAAAATGAAAACTAAAACTAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds