Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990487.1 PREDICTED: Strongylocentrotus purpuratus 5'-AMP-activated protein kinase subunit gamma-2 (LOC756927), transcript variant X2, mRNA TGGATACTTTGGAATACCATCATGTCATCCATGAGGATTCAGGATATGAAATGACCTAGACGATTCCCCA AGAGAATTCAAAGGCGTGGACCTTATATTTCTCCCAATTTGGCTTCTGTCTTTTTCGCTCACCTATATAT AAAGCCATGATTCGGCACGATGAGCTTGTCGCCAAAGGGGGCGGGCCGGAGCGTAAGCGTCGATGGTCTG TTCCTGGTTGGACTACACCTGCCTACGTGAAGTCCTGTTTCCCTGGAGTTGGTAAAGGAAGCACCAGGCA TGTTCGACTGAGGCACAACAGCAGTGGCACCATTCCATCTGTTGACCTGAGTTCCTTTGCGATGCCTTTC CTGGAGAGTGAAGAGCGATCACCAGGGAGCTCACAAGCAGGAAGCAATTCACCTTCTCCTGCAGGAAGTC TTACAAACATCGACAACAACCGTCGATATACCTTCCCAAGCAACATCGCCAAGCCAGGTAAGAGGAGATG GCACAGTGGACCAGCACCTGCTACCTCTACTGGTCAACAATCACCAAGCTCTGGCAAGCTTCTCTACAGC ACCACACAATCTAGATCAGTTGGATCTCCCAGCAGCACCGGGTCCCATTCTTACGTGAGCGGCCTTCAAC AACTCAGACTGCAGGACTACAACAAAGAGCCGGAGAGGAGACTGCCTCGGCGGGTCCTCGTCCGGCAGTT CTCTGACCAGGGAGAGTCCGCCTCTGTACCTTTCCATCCGAAGAAAAGATTGGAGCCACTTAGAGTTCGA TCCTACTCAGAGTCCTACGTTAAAAAGAAAGAGGAGGAAGATATGACCTTCGTAAGGTTTATGAAGAATC ACAAATGTTATGAGATCATCCCGACCAGCTCCAAACTAGTCGTCTTTGATGCAGAGTTATTGGTGAAGAA GGCTTTCTATGCCTTGGTGTACAATGGTGTCAGAGCAGCTCCACTATGGGACAGCTCAAAGCAAGACTTT GTGGGTATGCTGACAATAACAGACTTCATCAACATCCTTCAGTACTATTACAAATCACCATTGGTCAAGA TGGATGAGTTAGAGGAACACAAGATAGCAACATGGAGAGAGGTGTTAAAAGAGAAAGCCAGACCGCTTGT GTGGATCAATCCAGATCAAAGTTTGTTTGAAGCCGTCAAGATGCTCATCCAACAGAAGATTCATAGGTTA CCAGTCATAGACAACGCTACAGGCAACGTCATCTACATCCTAACTCACAAACGTATACTGAAGTTCCTTG CTCTACTGCAAAAGACTGAAATAAAGAGTCCCTCCTTCCTGAAGAAGACCCTTAAAGAACTCAACATCGG GACGTACACCAACATTGCCACAGCTCGACCGGACACCCCTCTGATAACAGCTCTCAATATGTTCATAAAC AAGAGAGTTTCAGCCTTACCCATCGTAGACGAGAACAACAAGATTGTGGACATCTATGCCAAGTTTGATG TCATCAATCTTGCTGCTGAGAAGACGTATAACAACCTAGACATCACCATTCAACAAGCGCTCCAGTTCCG TCAGACATACTTTGAGGGTGTGAGTACATGCAAGGCTTCAGAGACATTAGAAACCATCATGGAAAGGATC ATCAAAGCTGGGGTCCATAGGTTAGTTGTGACTGACGATGAGAAGCATGTGATAGGCGTCATCTCACTTT CAGACATCCTTAATAGTTTAGTGCTCAAACCAGCAGGTGTACCCAGTAGAAAGAGCAGCTCATCATCGTC AACACAAGGGTCGCCGCGGGTATAGCAGGGTCACCAGCAGAGGGCAGTATTTCCTACAAGTACTAGCAGT TGGGTATCAGTTCTTATGTTCCTCAGAGATCGTACAAGGAGGGCTACGTGGTTTAGAAGAACCATCATGA GCACAATAACATACGGTCGCTTGATGTATCGGGTTCCAGGCCATGGATTGCCTGCTAGTGCATCCTGCTG TATTGGAGATCATGCAAAGTCATCTCATCGCCAAAGATATTCCCTGACTTATTTTCTCTGTCATTTTTTC ATTGTCACCAATGTCTTCATGATGTTATAAAGATATTATATTTTTATTTTATTTGAGAATTATAGTAGAA TCACCACAGGCACACAGGGATCATAAATAGAAATAATTTTCTTTGTGGTATACAGTCAATAGTTCTACAG AGCTTACACGTTTGCAAAGAGTTACATGTACATGTATTATAATTGCACTTTTCAAAGTAAACCTTTTGGC AACATTTATATCTTTTTGAGACACAAGTCGAATTATAAGTGTTTGGGAAATCCAAGCTTTGAGATTCGTA GCAGAGTTAAACACAAAGAAATTGCTTTATCTGTGATATTCCACCTTGTGTTAGCTTTGGTCAGGCATGT CATTTGAGCAGCTCGCTAGAACAGCTGAAGACAGGAAGATATGGAGAACCTGTGTCTCAAAGTCCATTTC ATTGTAGCCTTAACGGCCTCCAACCAAGCTATGGGACATAGATACCTGTAGCTAGATTTGGTTAGTTAGT TTGGGTTGCTGGGCTAAAATGTTTAAAGAATTCACAAATCACTCATTAACCAATTGAATACTAGATTATC TAATTCCCATAGGCTTAACACATGGACCAACAGGTTCCAGTAAGCAAAGGGTTAAAATCTTCCAGGAAGA ATCTCAAGTTTTCGATGATTCAGATGATTTCGAAGATCGGGTGGAACGGAATGACTGGAGTTGCAAGGAC AGACATTTCAAATGTTGTGTCTCTACTCTAGGTGTTTTCTTATATGATGCTGTAAACATATGGATTGTAG GAATCAAAATGGGAAAAGTTGGTGGCCAGTATACCACTTGTATCTACTACAACTCGCTTTACTTACCTAT CTGTTTCATAGTTGCCAATCTCCAATTAGAATTGCCCCAATACCTGAGATTAAGAAAGTTTTTTGAACTT TCAAAGAACTTTTTCAGCTACGGGGCGCAATTCTAATTGGCTTTAGAATGGCAATTATGAAGTAGATAGG TAAGTAAAGCCGACTCATAGATAAAATGTTAGGTCACAAACATACAGATATGCTTTAGAAAAGAGTTCTG TGACACATCCAACATTATTCACCTGTGTGACAGTTTGGGTGTCTAAGTTGAGACATATACTGGCGGACTG AAGCTAGCTGCCAGTTTTAAAAACTTTAGTCTGCTTCAGTCTGTCAGCACAAATCTAAGGAAGTTATGTG GACTGACGATACAAAAACTGTCACACAGGTCGATAAATTGTAATGTGTCTTGGAATTCTTATCTAAATTA TTTAAACCATCTTTTCTAAATTATTCAAACCATCCTGATCAAATTGTTTGTCACTTATATAAGGTTCTGT AACACTGCTATTCTTTCTCCTGTCTTGACAATGTAAGTGTCCTTTCTGCATGTGTTACACGGAATCGAGA GTTAATACTTTGATAATTTTTTATCAAGCTTTTGATTATTTATTTTGATTACATTGTGATTTTCTACTGA AATATTGGAACATGAATTTATGTTTGCTTTTGCATGATATTCTTTTCCGTGAGAAAAAAATGGAACATAT CCCCTTTTCCTTGGAAATTTGAAGATCAAGCTCACATATTATTCAAAGTGATGCTCACATAGTAGGATAT GCAGAGTAAAGAGAAACACATGGCAAGGAATGGTTGTATACTTTAATAACTTCATGCATAGGGACTTGCT GGTAGAATTTATGAAACTGTACATGTAACTATATCATTATAGAAGGAATATCTAAGTACTGAGAATGTTC CTTTGAACTTTGTAGCATTGAAAATCTTTACAAAGGAAAGTCCTTTATTTTAAGCTATCATCCCTATATG ATATTGTTAGAAGTATATTTTTGAACCCCAATCGAGTTCAAGATTGTACAACAACTTGGAAAGGGCTTCA TGGTGTCAATATATTCAGGACTTCCAGATTTGTTCAAGTTATTAAAACAAATATTTCCCCAACCACCATC ATTAAAAATTGTATACCCAGTTACCTGTACTTTATGAACAAATGTTTGTTCAATTTGTTTTTTCTTGACT TACTTTTTATTTCTTGTGGTTTTAACAAACTTGGGAACCTATGTGAAGACAAGTATGTTTTCTTTGCAAT AATTTTTATTTTAACTCATATTTTGTGAATGGACTATGATTGCATGTATACTTCATTTTTTTTTCTTTTG GTGATTTTTTGTTTGTTGCCAAAAACCTGTATAAATGTAAATAGAAAGCAAAATGAAATAATTTGTAGCA AATTGTTTTTGAAATATTTAATATTGATATCACTAATGATCACTTTGATTTGTTGCTTGTTATCTCGTGG ATATGATTCAAGTGTGTTGTCATTGTTAACAAATGAACATCACAACAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds