Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103552.1 TSA: Strongylocentrotus purpuratus WHL22.278056.0 mRNA sequence GGAAATCTCGGCGGATGAATTTTGTAAGCCCGCAACCTGTGAAAGGGCTCGCAGTTGTTTGCTCGATATC TGTGACGCCGAACGTGTAGTTTGACGTGATGCTACGTAGACAACAAGGTGTCCATTCCCATCGCTTCTAG CCTGTGACGAGAAATACGTAACCGGGTAAATCCTACTGACTTGCGACGAGAGTCTGGTAAAATGGATGTC GGGGAGGACGGCAAAGCACAAGAGGAGAACGGCGGACAGGTGAACAACATCTCACCTATGCCGGTTTCCT TGTTGATGACTCCGCCCAACAACACCACGCCCCTCAATCAAGTGGTTCACGTCCAGTCTGTCATTCAAAC TAACAACCAGCACTCCGTCATTCAGGCTACTCCTGTAGTTCAAGTTCAGCAGTTGGATGAAGACAGTCTG ACTGTGGATGGTGAGGTTGAGAGAAAGAAAAGACAAGAAATATTGTCACGAAGACCTTCCTACAGGAGAA TCTTGAATGACCTGTCGTCAGACGTACCAGGTGTGCCCAAGATAGAGGAAGAGCCACCAGGAAGTGATGA GTCGGAAGGCACGCAGAGTATCATCGTTTCAGGAGGAACAGCCATACAAAACCTACCAACAGGGGCAGCC ACCATCCAGATTGCCAACCCTGGACTAGATGGTGTCCAAGGCATTCAGACGCTGACCATGACCAGTGCTG GAGGGTCAGGCATTGTCCAGTCCATCCAGACCCAAGACGGTCAGCAGTTCTTTGTGCCAGCTTCAACGGG TGAGTACCCTGTGAACATTGCCCGTCTTGGAGAGGTACAAGCCTACCAGATCAGACCGGCCACATCGTTA CCCCAGGGCGTGGTCATGGCGGCACCATCGGGCCTCCAACAGCAGCATGTCATGGTAGAAGAAGCTGGAA GGAAACGAGAACTCAGACTCATGAAGAACAGGGAAGCAGCCAAAGAGTGCCGGCGGAAGAAGAAGGAATA CATCAAGTGTCTTGAGAACAGAGTGGCAGTCTTAGAGAACCAGAACAAGACATTAATAGAGGAACTCAAG TCACTCAAAGAGTTATACTGTCACAAATCTGATTAAGGTTCACCATGCATCGTGATGGGGGTTATTTTTG ACGAATGCGAAGTGCCACAAGGAGCTGCAAGATTCCGGAGTACTCTACGTGCACTTACATCTTGACTCGA GAAGATTCAAGATAGCGGAGAGTTTTGTTGACTGGAAAGGAAAATCACTGGCAATGTTTCACGCGACGAG GAAAAACAATCACGTCATCTTGACAGCATTCATGCCCAGCTGCCTGCCTCATGCGTTCATTTGCACTTCG CTCATTGCACAGCCGTGTCACCGCGATGTCTTGGTGGAGGCAAAAGAAGAAAGACTTGTGAAATGATCAA TGAAATGCCGAAAGATTTGATTTTACTGTATATATGTATTTTTTTTTCTTTTTACTTGTAAAGGAAAAAA AGGACGTCCAATGGATCATTTTCATGCACCTCGATGGAAGAGCACTTTTTATAAAAGTCTAAAACTATTG TTGAGAAGTGTATCTGGTATATATTGTCAGAGTGTCTATATTTTCATACTTGATTAAATGAATAAGGAGA AAGGTACACCATTTTATTAATTGTATGAGAGATGGTGTTTTGAAAGTTTGGCCATTGTTGCTGTTGTTCA AATTTGAATTTTAAACATCGTAACCAGTTGAAAGTTCAGTCAAATTCATTTGAAACTGCTGAAAAGGCAG GCTAAGTTCGAAGCAATGGGAGTACATGGCGTAATATTTATTGAGTTTGCTTACCGGTAACTCAGTAATG ATTGCATTTAATAGTTTGGTTCTTTGGTAGAAAAAAAAAAGTGTTTTTTGCACTTTACTTTATAGGAAAG ACTTACATTTACCCAAATCCTTATCCGATTTGGTTGGGACCAGGGTTAATGTAAAAAAAAAAAGTGAACA CCCCCCCCCCCCCCTTAAATGAAATGAATAAAAAAGAAACAACTGAACTATAGTGTACATAATAGCATAG TGTTTAATATAAAATTAATCATACTTGCTGTCATACAGCACACTTTTTTATCTTTACTTTTTTGATAATT TGACCCAAATTTGCATCACATTAACTATGGTTGGTTTCTGTCCTTCGACTAAACATGCTTATTCTTTTTT GTCCTTACTTACTTACAAACTATCAAATCATTTAAACTGTCAAGACGCCAAGTTGTCAAATACACTCCAA AAATTTCCTTTCAATAATTGTATTTTTTCACCATACATTAACAACCGTTTTATACACGCAAAGCCATCAT CTCCAATGGTGTCTTCTTCTCCAGGCTGCACCAAGTACCAAGTTATATGGACTTGAACATGTGTAGATTT TAAATGGCTTCTATACGTATTACAGGTACACCTAAATAGATCTGCCTGTGTGGTTTCTACGGACCTATCT AGAAGCTAATTCTCTCGAGAAGCCACAGAAGGGTGATGTCTAATAGGTATATGTCAGTATGTGGATATAG TCCAAATGGGAAAGCCCCTCAATTTTTTTGAATGGTAATGCTAAAAGACATTGATATTCATTTACTGTTT TCTTGCCATCACATGCATATTATTTATCACTGTTACAGTCTGTAACTAGTCTGAAACTTCTCTTTTTTTA TGTGATACATGCGTATTGATTTGGAAGATGAAAGTTTCCCCATAATACTTTGGCAGTTTTCATCAAGATG CCCAAGAAAGACAGGAAGCAAGCATTTCCAAAAATTAAACTTATAAACATCATTATTGAATGAGACCATG ATACGACTAGACACATTTTTCTACCTTAAATATTCATATCATCCATGCACATTTCACTGGCATGAGCAAA TACAAATTAACTTTTTCATTGACAAGTCGACCTTGCCTGTGTAGTGAATCTGTATATTGATTGCACTATA AAAGAGGCTTGATGTTGACTACTTTTCAAGCAAATTTGTGCCTTTTCTGAGCAAAGAATTAACCTGTATT TCAAAAGGAAAGAGAGGCTTAATACACTGAATAGAATCGTACATGTAAGGATATTATGCTCTTTTAGCAC TGTGTACATCTAGTGTTTATTAACTTTGAAGTAGTCATGTAGCAACCAAGTTTTGTTTATACATCTTTTG TTGAGATAAACAAGAAGTAGTTTTTGATACATACATGTCATGAGTTGTTTTTTGGGGGGGAATTTTTATT CATTACAGTACCGTACATATATGAAAGGTCATGATATCCTGCTTTTTAGTCCCCAGCCCCCCCCCCCCCC TGTTCTTTTTCTCCAAGCAACAGGGTAACATTAATTTTGATACTAAATTTGTATCTTACCAGCAAGCGTA ATATTGGAGAACTGTATTTCAAGATGAATGGATAATATATGCATACAGATACAATTATTTAAACAATTGA TATATTTATACCTTTTTCTTGACAGAGAACGGTTTTAATTGCAGACCCATTCAAATACAAAATCAGTTTA GTAAAAAATTGACTGTTAAGCCAGTTAGAAATTAATTATTTAACAAATGACTATATTCGTGTATGAACTC AATTTTGAAAGTTGTAATTGTTGTCAAACTCGCAAGTTAAGACTATTGTCCGATGATTTAGTTGTGAAGT TTGCTCTCTAATAGAGCAAGACTATCAGATCGGTTGGAGCATAGAATGACGCCATTTTGGCTCTGGTATT TGTCAATGACAGTAGAATTTAAAGGCCATCTGTACTAGGTTGGCTAGGGGGGATTAGACCACTCAGAGTA GTCACTGACCGGTGGCTATCTCGTCAACTCAGCTATCAATTAACATAAGAAAAAGAGGATCATGGGGGAC CAATGGTCACCGATTAGGCATCGTTTCTATATAGAGGGAGCAAGTAGCTAAAAGTAGTACGGTGGGGCTT TAAAGCGTGACTGAACTGATGATTGTTCTGCCCTAGCATACTGTTTATTGCATAGCGCCATCTTATGTTC AACTTGCCAACAGCACAGCTAGGGAAGTATTTATCTACAGCTCCTGAGATGGATGTAGAAGGGATTTTGT GGTAGAGCTCCTAGTATTAGTACAGGCTTTTGCGCAAATTTGATGGAATACATAAGCATTTTTTTTTTTC TTCAAAAAACATTAATTGTTTGTTTTTGTGTACATGATATATACTGGGCTGCCTTGAAGTGAATACTTTT GAAAGAAGACTGGTTCTTGTTCCAGTTTCTCTCATTTACTGTTGTACATATTTCATATCCTTTTGTGATG AGAAACTGCGAGACCGGTGCTTGCTGGGCAAGTGACAAAAAGAAGTTTAGAATCGACATTGGTCTTTCAA GATGAAAGGCAAATATTTTGATCGAGAGGCAGAACTGGTATTGTCCAGGTGCATATTTTAAATGTTATCA AACTTGTTAATTAAGATTATATGAGCTTTTTGAAATATGCTCAAATGGGTATTTTTTTTCTGGTGTTTTC CACTGACATGTATATCTGCAGAACTGAGTATTACTTTGTTACTTCTATTTTGAACTATTTGTGATCTGTG TTGACTGTTCAACCTAAATGTGTATGTTATAAGTTATATAATATAGTGAATTCCAAACTTTGAACATTTT AAATGTATAATTGACTTCAAAGATTTAATTACAAAATTTTGCCAGTATATTCCCTTGTCAGTTTTGAATT TTGATTCTTTCCTCGTTAAACAAGGATGTTGCTCCGTTGTATATATATCATTTTTTTGAAAAGCCTTTGT CTTGTACAGTAGAATTACCAACTATCAGATTGATTCTGTTGTACCTTTTCTCATTAATCTGATTGCATCA CAGTGGAATAGTGGTGTTCCATCTACAATCGTATACATGTACATGAACACGTTTTCCGATCAAATGTTTG ATTACTTTCACCACTACTAAACGCTTGTTCCTACGTCGCAGAAGAGCTTTGCAGGTTTGTTTTTTTTACA TTTATGTGAATGGTTGATAAGTGTTGATACAAAAAAAATTATAACTGCAGAACAAAGGTCCTGTGCATAC TTCTTTATCTGTATGTTACGAGGTAGAGAAACGTTCATAGAAACGCTATACAGTAGCCACCATCGCTACC CCTACTGAAAGGGGGAAAAAGATGCTGCAGTTTACTACTTTATGTGAACGAGCCTTAAATGGGATGTCAG TATCACTTTCACAATTGCAATTTCGCATAATCACTGTCGTCGGTTAAGTGCAGTCAAAATACAATTTGTT AATTCTGTCTTGTGATTTTAGCTCTCGACCTCACCAACAAATTAATGTGTGATAGGTATTTACATGTAGC TTGTGAAACTGGCGAGTTGTGATGTGTACCTGTACGTTCAAGCGTGTGGCAACCATGTTTTCACTACAGT TGGATAGCCTTTGTGTATTTCCACAATTTTTACATTTGAAGTTGTTGCAAACTTTTTTTACATACTGAAG AGAAGTTATTATTTTTTTTGTCTGTTGTCACTTTGAATTGTTTTTAAATGATAGATGAATAACAATGGTT GTTTCGTTAAACTTTTAAAGCCATCGTATACATTGAGAGACAAGTTAATTGCCATAACGAATCCTCACAC GCAACTTTGCAAAGTGTTTATTCCAGGATATTTAATTGACTATGACAAATTACACCTCAAGTTTAAAGGC AAGTTTTCAGAATATTAACTCTAGTTTTCACCAGCTTCATTTGTATTTTATTAATGGAAAGGCCAAAACT TACGACACATGCATAATGTAGTTTCTCTATCCCCCGCCCCCTCTTCTCTCTCTCTCTCTCCCTCCCCCTC TCTCTCTCCCTCCCCCTCTTCTCTCTCTCTCCCTCCCTTCTCTTTCTCTCCCTCTTCTCTCTCTCTCTTT CCTTCTCCCTCTGTTCACAATCTACTCTTCTTTCTCTCTCGTGATTAATTTCTTTCTTTGTTGTGTTCTC ACCCTTTTCTTTTCTTTTTTAAACTTTGTATTTCATTGTTAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds