Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114892.1 TSA: Strongylocentrotus purpuratus WHL22.650400.0 mRNA sequence GCGCAACTCATACAGGTGGCGTAGATTCTGGATCAGTTTTCACTGAATCTACAAGAGGAAAATGGTCTAT TATCGACAATTAATGAGAAATGTTAACGATCAGAAGATTTTACTTATTCTGAGGTCAATCTGAACCAAAA GGCCGTCGTACCAGACTGAAGAAAGTTCCTTAGCACGATGCAAACATAGTGTGATTGGATCCAAGAGGAT ATAATAATTCAAAGCCCTCGTCGATCACCTAAACAACAAACATGGCAATGGACATCGTAGTCATAGTCGC AATTGCCATCCTCGGCCTACTCTTCATGGCATCATTTGTGGCTCTCATCGTCGCTTGCAGACATCGTTGT CGAGTCTTTGACATCAATATTAAGGAGTCTATACACAGGAAAAACAGTGGTCGTCAGAACGTGTCCCTGG TCAACGATGCAGAGATGCCTCATGAAGACTTTGAGGTGGAGCTGAGAGATGTCTGCGCAAACAACAACCT GGAACAGATACTGGAAGATGAAGACTGGGTTGACGATGCTTCAGGTCTGATGCCGCACTGCATCGCTATC CTGAAGACATGCCATGAGCTGACGGAGAAGCTGGTTGCCATGACGATGGGTAACGCCCATCATCCCAGGA CGTCTGACAGTCTGTCTGATATTGTGGAGGTGGCCAAGAGGATTAATCCAAGAGTCGATGATGTAGTGAA GTGCATGTATCCTCCCATTGATCCTCGGCTGCTGGAAGCAAGGTCAGCTGCCTTACTCTTATCACTGCAG CATCTTGTACTGGTCACCAAGCAAGCCTGTCAAATGTCCAGTTATGTGGAGTGGATTGATGGGTCAATCA AGCAGATGGAATCACACTTACAGGTCCTAAGAGATGCTGCCATCACATGGGAAGCTACCTCAACGGAAGG CTACCAACCGCAGCCCGTTGCTCTCGGAGCCGTCGGACCTGCCCCTCATGTGATCTCGCTCTCTTCCTCT CACGTATAGGACACGGATGTGCGCCCTCTTTGTCCAGGATACACGTATTGATCACGTGGGAGACGGACCT TCACGTGAGGAGACATTTGTGGCGGTTATAGCCAGTGGTTGTTGTAAATTCAGGTACAGTCAAACCTGCT TTAGTGACCACCTGTCTACAAAGACCACATTTTTTGATTCCCTTGAAAATTGTTTCTCATTGAAACATGC ACTGAAGGAACCTGTCTACAAAGACCACCTGTCTACAAAGACCACTTTCTGTGTTTCCCTTGGGCGGTCG CTATAGACAGGTTTATATGGTGCCTGGATACCCATGTACAGTCCGTTTGTCTTTTCATCCTAGATGCCTC ATATATAAACTCTCGGGGAGAAAAGTCTTCTTCGTTGTATCTGCTTTCATCACCTACATAAAACCCATTC TACCTGTGCCTCACTCTGCTCTACTTGATGTACAAGTGCAGAGTGTAAGAACTGATACAGAATTACGGAA CTGTGTAAGACTTTTGTATTCTGTGATATTAACACTGATCTTTGGAATTATCAGGGAAATATACACAAGC AAAAGAAGAAGAAGGAATGTTCAGAAAATGTCCTTCCTTTGATGCTTCTTCACAGGGAATTCTGATTTGC CTGAAACTTGTTGACTACTGGCTTTTCTACCAAAGAAAAGAAGAAGGTACTGTACTCTTCCATTTGGAGC TGCTGGTTGAAGGATTCTTTCTGTCGACTTGTGATTTAGGCTCGATATACATCTAGGAACAACCTGGTTT AATCAATCATGCTTAAAAAGATCCAGATCATTGTAGAGTTCACACCAATGTAAGCACACTACCTGAACTT TTAACTTATCCAACGACTTTCAAAAGTTGTGCTGAATAGAGTTGACTTCCTTGTATACCGGTAGATGCCA CTGTGGTATCTTAATGTTTTAGTCACAGCTAATTAATATAGTTTATTTTTGAATTTATAACGTAATCTTT TTGCAATATTTTTAAATCTCTATTTAGCACCTAACCTCATTAAACGTCTAGTAATTGCCAAATTTTGTCA TGAAAATCGCCGCCTTGCATATAATAAGGTTTTACATTTCAGTGTGGGAACTGCATAGTTTAGATATCAG GCTCAAAAGTTGACCTCATGAAGTATACATCACCGTTGTTATGCTCAAACCAATAGTATAGGAGAGAGGG AGAGAAAGAGATAGAGAGGGAAATAGAGAGAGAGAGAGAGGGAGGTAGAGAGAGAGAAAGAGAAAGAGTA AATTTAAATGTAAAATAAATCAAATTATCAGCTCTTCTCTGAAGTGCGCACACTGAAAGCTCTCTGCTAA AAACTAATGATAAGCAATAAAATTGCAAAATTTTAGAAAAGTTCTTTTTATATTTACTCTCTTTTTGTTA TTTCGACATTTTTTAATATGATATTGACATACCCTGAAGATTATATTCAGTAGACGTGGCACATTTCTTC CATTTTCCATTATGTATTAGATCATTTTCAGCCAAAAACAGTTGTAAATACTTATAAATACAATTTTATG TACAGGTTCAAGTAGATGAACAATTTTAAGACCTTAAAAGATTTGTAGATTAACAGTTTCAGTTGTTATC TGATTTCATATGTGTTATTTCCAGTGCCCCTTCCAATTTTCCAGCGAAAAGACATTTGTCTATATAAAAT AGGGTTTTTGTAAGTGAGTACTAAGTATCCTATTGGCTGAAACGGTGTCACATGACACTTAACATTTTGT TGACCATGCAATATAACAACCTTTTTTGCACGGTTGAACGCATACAAAAGTGAACTAGACTGAACACACA CCTCTCTTCCCTGCGCGTATCCATTGTCTGCATATTATGCGCTGTGCACATCAGGGGCCTGTAGCCTTTT TTCAATGACAAATGACAAAAATCAGTGTCAAATCTGCTGATAGCCAATCAGAAGCAAGGATTTCAGTAGC TTATAACAAAATAACTGTCATTTTTCACTGATGACAAGTTTTGTGAAATGCCCCCCTAACGGGAAGACAA AGGAGGGAGGCATGAGATTGCAAATACTCTCAATTTTATATAACAAATAAGACCTGCACTGCGTTGTTCA GTATAACATGTATTCTCCTTCAAAGTCAGAATTCCCTTTGTTGTATTATAATTCAACCACGGCATGTGGC CTCGGTGAAATCTAACATCACTCTGGGAATTCTTAATTTGTTGGTTCATATATTTTGTTACCCTGAAGGC CAGAGCATGCAATACTTGTATATTTGCCACCCTCGACCCGGGTGCAGCAAGTGTGTACCTGGTAGGATTG TATAGACAGCCGTGTATTATTACAACCCATGGTACATTATTAAAGTTTACTGCTCAAAACTTTGGAGTAA GGTTTCTGAAATCACAGAGTTCATTTACTGAAAACAAAATGAGGATTATTTGTAAGCCTACTATGCATCA TTCAAGTAGGGAGTTTTTTCAAATAAAACTAAAAGGAGAAAAAATAGTCGCGGCCAATTTTATTTTGTTT TCAGAACTCAATGTTCTCTTTTCAATGTAATGATTCCTGCCATATTCATATTTGTTTAAATTAATACACC ATTCATTATGTCAGTAGTTAGTATAAGCTGGACCTATACAAGTTTTGATAGTACTTTGAAGTTAAATTTA TTGCAGACATTCCATTTTGATTTGTATCGGATATTGTACTTAAGTATTGAATATTGAATTGTAAATATTG AGACGAAACTTTCATACTAGTACAAAAATAATAGAACTTGGAAAAACCCTGAAATTTATACACATGTATT CATGTTGTACTTAAACATTGAGAAAATAATGCTTTCATGATTCGTTGATAAATGGACTATGGAAGTAGGT AAAGACATTAATCATAATATGACCTATATATTTTTTCCTACTGACATACAATATGTAAATTGAGATGAAA GTTATTTGGTTAATTTGCATTTCCACTTTTAAACATAAAATGTCCTTCTCAATATGAGGTACAATGTACA TAGTTATTTCTACAGATACATAAACTGTACTTATAGAGTAATAATGTATTATTACCCGTATCAGACATCT GAGCTGGTCATTTACAAAACCGTATTGCTCTAGTTTTCACTAGCAGTGGGAACGGAGGGGTATATTCTTT GTATTTTCCTTGGTCTCCTTGCTCGTATAGACTTTGTGTGTAGAGACGAGGGAAAATATACCTTTGTATT TTCCACGTTCTCGCATCCGGGCATCTTGTATTGAAAGCGCCATATTTTGTCATTTTCATTGCGCATCTAT TATGCGTACGAGAACCTGCGCACTTTGCGCGCACTCTATTGTGACTTAATAATCACACCAAATGCACACT GTTTGCAGTGTATCAAACATTTTCGTCAAGCACTGGATGCACAGTGCTGATTTGGCGAAGTTTGTTCAGT TCTTTGAGATTGTCATGGTGGATTTCTGTATTTCCTCTAGATGTCTGATTTGGATAACAATGAAAATATT GACTGGCTTTACTTTCGGAGGATATCAGAAATATTGACCGCGCTAAGACCATATTGCCCTCGTCTTTCGA CTCAGGGCAATATGATCTGAGCTTGGTCAATATTTCTGATATACCCCTCAAGGCCAGTCAATATTATATA AATATGTTATTGATGAAATAATGCTGTATGTGTTTTTCCTTATTTTATTTTGCTGAATACTAAATGCCCT GTTATGTCTAATTATATGTCTTCCTGCCCTGTATTGATAACCAATGTTATTAAAACAGTGCAAGGAATAT TAATAAATGTATTGTAAAATCATTACAAAATTATTTCAGGGCTCTAACAAAAAAGAGATACAATTAATTG TCCCCCCTCCCCCTTCCCTCCCAAATGATCGTGTCTCCTTCAAATTGATTATACACCGGTGTGTTGGCTC AGTCAGTAGAGCGTCCGCCTCACAACCGGGAGGTCGTGGGTTCAAACCCCGGCCGCGTCATACCAAAAGA CGTTAAAAGACGGGAGTTGCTGCTATCTTGTTTGGTGTCAATAATAAGGGATAGAGCAACTTTTATCTGG CACTGCTCAGTGGCTGCCGGGCTCACAATCAATTGGGCAAAAAGAATTTCCATTTTCGGTTTAACTTAAT AAAATTTGGAGTGGACTTTAAAAGATTATTGTAAATCAATTGTATCTTCTTGATGAATAGTAAGTTATAA TTAAATTTTTGTGAATATTGATATATTCAATGCATGTTATTTTCTGATTAATAGCAGCATAATTGGAGAT ACATGTACACTGTTCGTTCGTTCGTGTCTCCTTAGATCAAGATTAATGTAATCTTGATCTTCGGAGTAGT TGCTACAACCAGCCGTGTCAGACACGTTGCCCCGGGGTGCGAGATAGGACTCTTGTAGCGTGCCCCCATT TAAAACAATTATACAATAACAGTAAACATTACATTTAATTAATAGTATGAAACTATTAAAATTACTCTCA TGTTACGGGAAAAAATATTGCATATATATATTATGAATCAGTTGATTTGGTCGATCCAGTTCGATGGCAC AAACACGTACGGCACTACTGGACAGAGATCCTAATAATTACAGAGCTTGGTCTTGTTGCTCTGATGTGCA CTGTACATCAGATTTATACAGTCAGTGGGTTAAACATGTAATCAATTTGTTTACCGTATGTTACAGAGTC CTGTGATTATGAGTTAAGGTAACATTTCTTTGAAGTTTGGTATGTAAATATTTACATGTATATCTACTAT TGATTTTTTTCTTCTTCAAGTTGCTTGCATTTTGAAATATTACATGTAGAGATAGCAAATGTACATGTGT CATCTGCTTAATGTTACAGAGTCCTGTGATTATGAGTTAAGGTAACATTTCTTTGAAGTTTGGTATGTAA ATATTTACGTGTATATCTACTATTGATTTTTTCTTCTTCAAGTTGCTTGCATTTTGAAATATTACATGTA GAGATAGCAAATGTACATGTATCATATCTGCTTAGAGTCAGAAAGCCGGGCATTGATATTGTGTGAAAGA ATACTTTGCATTTCATGCCCTTCTAGCTCATAACGAATACCAGGTATTGTTCCATTCGCCTTTTACATTG TAAGGGTATGTTTTATTTTATTTTGCTTGTTTGGTCTTGTGGTTTTTTATGTTTAATTGAAATTTCTGTG AATTACGAGCTATGTGCACATATTGTATATAACAATTTTATGATAGTATCTCTTTCTTTATAGTACTATG TAAGTACCATGATATATTAGAGTTCAGATGATATCAAATGTTTCTCTATTTTCTGACATAGATTATTTCC TAATGAATGCAATAACAAATTTATGTGTATATCAAATTTATCAAATTTATCAACGCTATCAAATTTAAAA GATTTTTTTTTAGCTGTAATTTTATTTTATTTTGTTTTGTTTTTGGATGTGTCTTCAAAAGATGAAAATT GAAAAAGTGATGATTTATATGAGAATACAATTAACTTCTGTATGCTTTACCAATCATAGCCATCTAGCAC TTCATACGGTGTACATGTACATGTATGTGTCATTGAATAGTGTATATATGTTTTTCAGTTTTACGCTATT GGGTTTTTAGCTGGTCTATTCCAATTCCATTATGGAATGACATGTATTTAGATTCTTAAAGATTTTTGCA CATTTTTAATATGTGCAGCACTTTTTACAAGAAGCCTTGCTTACATATGACATGGTCAAATTACCTAAAA AGATTAGGCAAAATAATGGCACTGGTGTAGTGTCTTTTCCTCAATATCACATACCGTACAATACATATTG TACAACTCACTCCAGATCCTAATCGATGATTGGTCGAACGCAGACAGGCACGATTCATTTATTGGGACTA TCACACATTTTTTCATTAAAAAGCATGCAATTAGTTTCCAGTACTATCCAACAAATTTTAAGAACACCTG TGGGGTATGCAAAGCTCAGCAGTGCGTATAGAGGAACTTGGCACTAGTACTGTGTTTAGGCATATATGCA TGAACCCGCGTAGCTTTGTACGTACAGGTTGTACCGTCTGTACATGCTAAAGTAAGCATATAATACTTGG GATTTATTTGGCATCAACAATGACATAGACCAATTTTAAAATGACTGGTATTTTAGATAAATCCTAACAA ATGATACATATCTTTATTCGTTTATTCTCTTTGTTGAGGCTGTATGTGCATCTATCATACTCGGCAGGAC AGCTTTGTAGTAGATGCACACAGCCTCAACGAGGTATGGATAGATCGTGTAAAGCACCCAAATCGCATGC ATCATTTATTCATTGTTGCATGCTGCTTCTTTGTTTTCATCTTTCTTTATTTTGCTGCAGTGGTTATTAT TAGACGGTTTGATATACTGTATATGCCATATTTGAACAAGGTTTTATACCGTGCGTACCAGGGTATTCAT TATTGTGAGTTGGTCTAGCGGTACGTTCTTGTCCGATCTGTGTCCTCACCTACAAACTGACTCAGGCGGA CCCCAGTTTTCAACCGAGTCATGTCTTTTGAATGGTGCCGTTAAAAGTCGGACATAAATAATCATATCTG ATTGATACGTTTGTAAAAAAAAAAAATATATATATATTTACAAACCTTCATCCATTTTCTTCCACAATTC AGTCAAGCCTTTCCATGTCTATTTAAAGGGTCGTTCACATGTACTGCGGTAGACCGTCATAGTATACTGT GCCCTTCAAATTTAGTACACAAAAACTTACTCTGTGGTTAACTGTGTCACATGTGAATTATATGCCTATA TACTTGAAACATTGTATCTGTGTGCATGTGTCCGCTTTTCTTAGGATGTTTGCACAAAACCGTTGCAAAG AGATCCACTGTACTTAAACAAATAATAAAGTTCTTTTCCATTCTATATACTTGATACTGTGTGTTTATAT ATTGTTTTGTACTTCGTTACTTTTCAAGTTGCTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds