Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_784244.5 PREDICTED: Strongylocentrotus purpuratus cyclin-dependent kinase 12 (LOC584384), transcript variant X1, mRNA TCATACATCGATCGTACGTTCGGAGATGTCTGAGTTGGGAAGGAACGAAGAATAAAAAATCCAGAAAACA ATCCGTGTAAATCATCCGCTTAATCAAGATAAAACCAGATAAAATAGTCATTATCTGAAGATTTAATAAT TCATGCTACAACTGATATCAATTTCTATCTACCAAAGAATTTAATTCGACAGATATTTGTTAACAAACGG CACGGAAAATTGACCACAAATTTGAAGAAGTGTATACGTGTACTGTACGTACGCGTGTAGTACATACAGT TGGCTAGCTATGTGTGCGACTAGAACAAGAAACAATATGGCCACGGAGACTCGATAAACTTTGAAGCCAT TGCCTGAGCTGTGGCGGCCATGGAATTTGTGCTGGGAATGTGAGCTACAATTCGCAATTATTTGAGAACT TCAATATAGTACTGGACAGTCGATTGGACTTATCTTCTTGGACAGGACGTTTAAAATTTTGCTTGCAAGT TGCTAATCAACGCCCAAACGTTCCCCGATTGTCTTACGCACAGTGCTGACAGCCGTTACCGTACGGAAAG TCGCGCTGGTCGTGGCCCGGTGAACCGGGCGTGTTTCCGTGATGGTGTACGGCGCACCGGCTCTGAAGCA ACGAACACTTGACTTGAACAACTGCAAATGAATCTACGACTGTGTGTGACTTCCTGTGTGCTTCACTTTT ACATTGAAAGTTATGCTTTGCAAATATATTTTGTGTGAACACAGATTTACTTATAGATGACTTAACTGAA AGGTGAACTACGTTGTGTACAGACAGAAGTTCACTATGCCAGGCAATCACAAGAATCGGGGCGGAAGCCC TACTTATTATCATGAACACAAAGACAGCCCTAGCAAGAGGAAACATGCCAAGTCCTCAAAGTCTGGACGA CACAAAAGTAAACGATCACGGGACAAGGTCAAGGAACAGGTCGTGAAACCTCTGGTGGAGTATGACGATG TCAGCAGTGAGGACTACTCCTTGAGTCCCCCACCTTCTCCCACTCCTCCGCCAAAGCGCAGAGCCTCTCC CCAACCCCAGAAGAAACGGAGACACGTGTCCCCAGCAACGGCGATTAAAATTTATAAGACACAGCAGGGG AAAGAGTCTCCCCATGTATCAAACTCTAAGAATTCTTCCTCTAGGAGGCAACCGTCCCCTGAAACCTACT CTGTGTCGCAGAAGAGCCACTCGTCCTCCAGAAAAGGAAGGGCCAGTGAAGCCTCCCGGCCAAGGGCTTA TCAGAGCTCTCCCCCTCCTCCAACCAGGTACCACACTTCACCTCCCAGGTACTCTGCATCTCCCAAGCGA TCCAAGCAGTCCAAGAGTAAGCAGAAGTATCGAAAGTCACCCACGAGTAGCAGGAAGAACAGAAGTCCAA GTCCCGACTACTATCAGACGTCCAGACAAAGCAACAAGTCTAGAAGTAGAAGTCCCTCCTACAGCAAATC TAAAACTAAAAGCAGGAAGAGGCATCAAAGGATATCCCGGTCTCCAAGTGGCAGTCCGTATCGAAGATCC AAACACTCTCCGTCCAGGTCTCCTTCGCCTTATCGGGGCAAGAAACGGGCACGGAGCCCTACCCCTAATT TTCCTGCCACAAAGTTTCATTCCTCCATTGGAGGGGAAGTCCAGAAGTACAGGAAGAAAACCGTTCAGGC AGCTAAGGCCAAGGTGGTCAAACAGGAGAAGGAACCTTCTCCAGAACCTGTGCCAGAACCTGTCAAGGTC AAACAGGTCAAACAGCCAAAGCCAGAGAGCCCAATGGTTTTTACAATTAAGAATGATTTGAAGGAAACCG CCTCACCTCAACGAACAGTCGTGGAATTGCCAGATAGAGGCCTTATTATCAAAAAGGAATTGAAGCCAGT TGTGCCATCGCCAGTGCCAGCCCCAGCACCTGTAAGAACCACCCCTCCCCCAAAGCAAACTTCAGCAAGG CCACCTTTGCCCCTCCCGCCTATGATAGACGCAGTGGACAGTCCTGTGATAGCGCAAAAAGGTAAAGGCG ATGTTGCTGAACGAATGCGAAACTTGTCCAGGGATCGTGCACGATCAAGGACATCGATAACTGATCTTCC GCTCCCGCCAATGGCTCCAACCCCCGATGAATCACCAGTTGACACGCCATCGCCTCAGACGCAGCTTCAT TTGAGGGCCAAGGAGAAGGATACAAAGGACCCCAAAGTGGACTTGGGTAAGCGGGAGATGATCAGGCAGA GGAGGGCAAAAATGGCTGGAAGCTCCTTGGATTGGGGAGAGAGGTGTGTGGATGTCTTTGAGATCATCAA CCAGATTGGAGAAGGAACCTATGGCCAAGTGTACAAAGCCAGGGACAAAGATACAGGTGAACTGGTGGCA CTGAAGAAGGTGAGGACGGACAATGAGAAAGAGGGCTTTCCAATCACAGCCGTCAGAGAGATCAAGATCC TCAGGCAGTTGAACCATGACAGTGTAATCAGGCTCCATGAGATTGTCACAGACAAACAGGATGCGCTGGA CTTCAAAAAGGACAAAGGAGCCTTCTACCTGGTATTTGAGTACATGGACCATGATCTAATGGGACTGCTG GAATCTGGGCTGGTGAACTTTAGCGAGGAACATGTCAGGAGCTTCATGAAGCAGCTCCTTGATGGCCTGA ACTATTGTCATAAGAGGAACTTCCTGCATCGGGATATCAAGTGTTCCAACATCTTATTGAATAACAAGGG CCATATCAAGTTGGCTGACTTTGGTCTTGCCAGGTTGTACCATGCCGATGACAAGACCCGCCCTTACACC AACAAGGTCATCACCCTGTGGTACCGGCCACCAGAGCTCCTGCTCGGGGAGGAGCGGTACGGTCCCGCGG TGGACGTCTGGAGCTGCGGCTGTATCCTGGGGGAGCTCTTCACCCAGCGCCCCATCTTCCAAGCTAACCA GGAGCTGGCACAGCTGGAGCTGATCAGCAGGATCTGCGGCACTCCTACCCCGGCGGTCTGGCCGGACGTG ATCCGCCTTCCACTCTTCAACACCATGAAACCAAAGAAGATGTATAACCGGAGGCTCAGAGAAGAGTTCT CTTTACTACCCAAAGATGCCCTGGATCTCTTGGACGGAATGTTGACCCTTGACCCCGACAAGAGAACCAC TGCTGAAGACGCGCTCAACTGTGGCTGGCTGCAGACTTCGGGCACGGGAAAGCTAAGCCAGCCAGACTTG CCACATTGGCAGGATTGTCATGAACTGTGGAGTAAGCGCAGACGCCGCCAGGAGAGGCAGCAACAGCAGC AGCTGGCAGCTCAAAATAAAGCAGGCAATGGCCCAGATCCAAGCCACTCTAAATCCAGTCGCAAAGAGCC TCCTCCTCCTGCCCCTGCAGTGACCGAGGAGGAAGCTCCTCAAATACCCGGACTTGGATCAGAAGAGCCC AGTAGCTCAAAGAAAGGAAGTAAGGCTGCCAGCCGCTCCAACACTCCCCAAGCCCCAAGAGAAGGTAAGG ATTCATCAAGTGACGGTGGGAAAGCAACGGGTGAAAAGAAACTGGCCAAGTTAATCAACCTGCTCCAGGC TCAGCCTCAGCTCAATGTCAACAAGCTTGCGGAAACCCTCAACGTGCAAGTGGATGCCTCTACTATCAAG CTCTTGGAGAACCTGAACATGCAGCTCTTGATTGCAGCACATGCTACGAAGCAGAAGTCCAAGGAAGGGG GAGATGATGCCAAGCCGTTGCCGTTACCTACCAAAGAAGTCACAACCGATTTGCTTGTGAAGGCCTTGGA AGGGTCCAAAGGGTCGGGTGGTGCCCTAGAGCAGGTGTTTGGGCCATCCTCTTCAGAGCAGAAGAAACAC GCTAAGGAAATTGCAACCTCTCTTGCCCAGTATGTCTCTGCCTTGTTTGGTAAACCAGTGAATCCTTCAA AGGGTCCAACAGATCCAGCTCCGTCTAGTGTCGTTAGTCAGGGTAAGAGTCATGGTAATGCCCATCAGAG CACTTCTATCGTCACCCCGCCCTCCGACTCCCGTAGCTCTTATATAGACAATCTTAGTGGCTCTCAGGGT GGAGAATCTTCCAGTGTGCCATTTTCCAGGAAGAACTCCAAGCCTGACTTTGGTGTATCGGATGACTCTC AGCAGAGCTGGAAACCCCCAACTCCTCTGGGGCCACCACCCGAGTCCCCAGAGGCGGAAGAGCAGGAGCA GCAACAAGAAGAAGACACAAGTCTGGTGACTCCTGGTGTGAAGGCTGCCTTGATGCAGATGATTGCCCAA CAGGGCCTGTCCGAGCTGGGCATTGATAACCAGCCTGTGGACCCCAATCTGCCTCAACCACCGGAACCAT CCCTGCCACCCCCAGACAACGCACCTCAGGATCCCTTCCTACCTCAGTCAAAGGCTATCTTCCCCAGCGG ACAGTACTGCAAAGAGGACCCCTCCAAGGCATCGGGAAGCGGAGACAGGGCGAACTCAGTTGGCGCAGGG AAGAGCAAGGGTAAAAATTGGTCCTCTCCCTTCAATCGAGGAGGGGGTAGAGGAGGGTTTAAGGGATCTC ACAGGGGTAATAAGAAGGGACCCGTTGGGCCAGGGACAGGGTGGTCATGATGATAGTAAAGACAAGAGTT ACTCTATTTTTTACACTCCTCTTATAGAGACAGGAATGTTGAAAATCACAAATATATTATGATAGTCAAT TGTCATAAGTTCCTAGAAGATATTCCCTTGCTCTCTCTTGGTTTGTACTACTGTCATCAGCTATTGAAAT TAAAAGACACAATGTATTTGCCTATTTATCAAACTTTGCTTTTGTGCTTTCCTATAAAAAGCTTTGTTTT TGTAGGTATCATATGTGGACGGTGACAATTCATTGATGTATTATGCACTTTTGGGACACATTTCTTTTAA AATTTAAAAAATGCATCTTTAGCTACTCACTTGACAGAGATTTGTTGAAATGATTTAGCAGCTTTAGTGG CCTTGATAATGTCTTGATAAAGTATTGAAATATGGTGCACAATATTTTGCCATTTGTATAGAAAGCGATG TTTAGTATATAATAGTCAAAAGTGCCATGAGTAGACCAAAGTCTTCTTTTTATAATTACTTTTTCAGTTT TAATTAGGAGTTTAAGTAGGATTTGTGGAAACAAAGCACCATATTTCATTTTCAGCTAATAATAGTCTGT TTATCAGATGGCATGAAAAGATTATTATATTACCATGGCAGCGCTAGATCAAGTGATCCATAATTTGATC TTTTTAAAACTTTAGACAGGAAAGATACAATTTGTAAAACAAAGAGATATTTTGTGATTCTAAACTGGCT TCCTATAAATCATTGACAGGTGAGTTTTGCAACTTCTAATGAACCCTTTCTTATGCAATCAAGGCCAAAT AACAAACTAAAATGCAAGCCTCGATAGTTTGAAAGATATTTCTTTTCAATGTTTAATTTGAATTCCTTAC CAAAACCCATGCCATAGATGCATTTCAAAATGAAAATGGATACAAATCATGATGTTCTGGAATAAGGAAG AAATATCAATATAAACAAGAAACAATTACAAAACAAATTGAATGTGAGACGATCACATAGAATGTCTTTA TCATGGAATGTCAAACAAAACCTTTACTGGGCTTTTGATTGGCAAAATCAATCAAGAAAGGGAGGGGGGG GGGTGAGATTTTTTTTACCAAAGCCAATTAAAACAACAGGAGGGAGTTATTTCTTGTTGAGACACCCCTC CCAGTGCATTTTCCAGTCCTTAGTAATTTACTGACATGAAAGGACATTATTTGAATTTATTTCCCCCTCT TTCTATGTTTTAATGATATCTCTATTTCAGAATTTGCAATGATCATCAACTGGTAACTAAAACAAATCTT CCTTCTGTTTAAGAATTTTCATGCATCTGATATGAAACATTCACAGATCTTACTCATGATGATGTTTTGG TCAACTAATTTGTAGGTTGCCGAAAGTATTTTAAACGTTACTCCCTCCCCCCAAAACTGTATCTTGAAGA AAATTCAATAAAATCATCTTAAACATTGTGTCAGACATGAAGGATCAGATAAAAAATGTTTAATAATTTT ATGGCTTACCACCTAAGGAGATGTCTTGATATCTTTGGAGTGATCTGAGGTAGGATCTTCAAATTGGTAT TTAAAGATCAGCTTATGAACTCAACGGCTTTTGGGGTCGCAGAGTAAAAGGGCATTTATGTCTACAAATT TATCCTCATTCATTTTGCTCTTCTGATTAAGTATTAGTAAACGCTAATTTAAAGGAATTATCCAGGTAGC TTGATAAGACCTAAAAAAGAAGAATTGGTATGGAAATGTTGTATGACAGTTAGGATTCTTAATAATAACC GTTGGCTTACAACAACTATTTCTGATTGTAGAACTGATTTAATTTTCAGGCCCATAAGGGCAAAGGTTAA AGGTCATTCGACTGACTGGTAATGTCTTGTGGTTAACTATGGTAATGGTGACGAAAGTCACTTTGTATTT TTATGTTTAAATTGTAGATATCATAAAGCTCTAATTGTTTTGTATTTCTTTGTTTATGTGGGAGAAAACC AGTTTTCATCACATTTCTTTTTATGAAAGAGTTCTTAACAATTATCACAAGATAGAAATGTAGAATGTAG GAACACTTTGCTAGTTAGTAGTTGTAGTATAGATGTTGTTGATTTTAGACGATAGCTATGCAGATGAGAC TTTAGTGATGAAGTGATGATTAAATATGTTGTAAATATAATGGGTGAATTTGGATCATAGTACTCGGCGT GCACATGCACCTTTGCTTATTGATGTCAAACAAGAAGATATTCATATGAGCCGGCTAAATTAAGAGCTGT AATTATATATTTTTTCCATGTAAAAATTTCAAGCCGGTCAGATATTAAGTAGAGACCGACACAAGGTTAA TTTGCGTCATCAGCTAGTGCAAGTGTAATATGTAAATCATTAAAAATCTGTGATGTGTTGATAAGCAAAG AAAGAAATTAAAAATGTATAAAAAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds