Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030989050.1 PREDICTED: Strongylocentrotus purpuratus liprin-alpha-2 (LOC593447), transcript variant X5, mRNA ATTTCTTTTTATATTTTGTCTCGTGCAGGAATTTGCAACATTAACGAAGGAGCTTAACCAGGCCAGGGAA CAGCTGCTGGAGAGAGAAGAAGAGATCTGTGAACTCAAGGCAGAGAGAAATAACACAAGGTTACTGCTAG AGCATCTTGAATGTCTCGTGTCTCGTCACGAGCGTTCGCTGAGGATGACCGTCGTCAAGCGCCAAGCATC GTCGCCCGCCGGCGTGTCCTCAGAGGTCGAGGTCTTGAAAGCTCTTAAATCTCTCTTTGAACATCACAAA GCTCTGGATGAGAAGGTCAGAGAGAAGCTCAGGGTCGCTCTCGACAGGGTCAACTCACTGGAGGGAGAGG TCGAGAGGTCACATGGAGAGAATAATAATTTAAAGGACCAACTCTCTAGACTGAGCAATGGAAACCATAA AGACCTCAACAATGGAGATACCATACACAGTATTAGCAACACAAAGAGGCTATCAAATGGGTCTATCGAC CCTGATGATGATGTGAGTCGTGTCATTGAGCTTCGGGACACTCTAGAGAAACAGAACCATGAACTCGGTC AAGCTAAGATCAGGGTTACGGACGCTAACATCAGGGTGGCTGAACTGGAGGAGAGTCTAGCAATGGCTCA GAAAGAGATGCTCAAAGCTCAGGAAATGGCTGCTAAATATCAACGGGATGCTAAAGAGGTTCATTATAAG GCAATGGCCCAGAAGGAGGACATGGAGGAGCGGATAGCGACTCTTGAGAAGCGATACCTGAACGCCCAAC GAGAGACAACATCACTACATGATCTCAATGATAAACTAGAAGCTGAGCTAGCCAGTAGAGAGGCTGATGT CAAACAGTGTGAAGACAAGCAGCGAGGGATGCAGGAGAGACTAGATGCCTCAGAACAAAGATTATCCCAA TCCTTGAGTAAAGCGGAAGCCTTGCCTAGTGTAGAAGCTGAGTTAGCAGATAGAATGGCTGCCCTCTCTC AGGCGGAGGAGAGGCAAGGTAACACAGAAGAGAAGCTAAAGCAACTCAGGAATGAATTGGAGGAATGCAA ACATGAACTAGAAAGGGCAAGAGAGCGGGAGCGAATGAATGAAGAGCATAACAAGAGATTATCAGCTACG GTAGATAAACTCCTCACAGAATCTAATGAGAGATTGAAGATCCATCTCAAGGAAAGAATGTCTGCTCTAG ACGATAAGAATGGTATGACTCAGGAATTAGACAAGATCCGACGGTCGATGGACGAGATTGAACGAGAGAA AAGTAAAGTTGTTGAGGAGAGAGATCGATTGAGGATAGAGATAAGATCCTTGAGAGAGAGTTTGGATTCA GATGGCTCAGCTAGAAATATTAGTGGTAGTACTACTTCCCAAGCTGTACCTGATGTTGTGATGGCTAACG CTTCTAAACCAGGCCGAAATGAAGACGATGTTGTACGGCGCCCCCAGAAGGGACGGGTCGAAGCGCTCAA GGGCAACGATAGAAAGCAGGTTCACACGTTGAATGAGCAGGAATGGGAGAAAGCAGAGCAAGCGAATGTG TTAGCAAACATAGCTCAAGCCTTTGAGAGTGAGAGTTCGTCTCCTGCTGGTGAGGATAACGCTGGTATCT TCTCAGCGGTTGATATGTTATCACCTCAAGGTCAGACTGATGCTCAGACGTTAGCAGCTATGCTTCAAGA ACAGTTGGATGCTATCAATAATGAAATCAAACTAATACAAGAAGAGAAATTTAGCACTGAGCAAAGAGCT GAAGAGTTAGAGCATCGGGTAGGGAGCGTTGATAATATTGATATATATGGGACTTCCCCTAGTCATCGAT ACTGGAACCCTGAACCTAGGTCACTTACAAGATCATTACCAGGGAGTATGTTAATGATGACAACGGCTGA TCAAGCTCCACCTCAGCCTCGTACAGGGGAGAATAAATCCCCCCCTCAGAGCGCGGACTCTACGCCGGTC ACCGTCAGAAGAATCCACCAAGCTGAACCCGCATCACCTCTTACCAGTCACTATAAACATAGCGCTAGCC AACCACATATATCGTCACTAGGGGGCGCTGTTTATGGTGTACGGGAAAGAGGATACGACAGCGACGTGGA TGATATTGCATCAAGGCCCAAATATGTGCACAATCGTTCTATGTCCCTCTCAGAATCGGAGCTTCAATAT TGGCAGAAGCCAATCACAAAGGAGAAGGAGACGGCTGAAGTGAGACCTATTCGATGTGAACCAAGCCCGC CCATGTCACCGAGATCTCAACAGCTACAGAAAATGGCTGCAGCTATAACCGCTCAAGCTAGTCAAAATGA ACAGAGAAGCAGAAACTCTATGGAGAGTAATAGTACACCCAGCCCTCATAGCAGCGCTAACAGCTCACAA GACTCACTCAATAAGAACTTAAAGAAGAAAGAAGCATCTGGTATCAAGGGCTCTCTAGGGAGGATCTTTG GAAAGAAGGAGAAACCTGGTAGAAGAGGGAGAGAACATCCTGATAAAGCTCATTTCCAAGATGATTCATC TTCCCAAGATTCAATGACTCCTGGAGTAGCTGGTCAGAGAGAGCAAGATAGGAGAAAGAAAAAGAAGCAT GAGTTGTTAGCTGAAGCAATAAGAGCAGGGACCCCGTTTGCACTGTGGAACGGTCCCACAGTAGTAGCTT GGTTAGAGCTGTGGGTTGGCATGCCTGCTTGGTATGTAGCAGCCTGTAGAGCTAACGTGAAAAGTGGGGC CATCATGTCTGCTCTGTCAGATACAGAGATACAGAGGGAGATTGGAATCAGTAATCCATTACACAGACTA AAATTAAGACTAGCTATTCAAGAGATGGTTAGTCTTACTAGTCCATCGGCCCCGCCCACATCTAGGACGC AGTCTGATGAGACTCTCACTGACCCTCCTCCGTCCCGCCCACCCTCTCCACCCCCACCCCCTCCCCATCC TATTGAACAGACCCTAGCGTTTGGTGAGATGAACCATGAGTGGATAGGGAACGACTGGTTGACGAGCATC GGCTTACCTCAATATCGATCAGTCTTCATGGAATGCCTGGTGGATGCTCGTATGTTAGATCATCTTACTA AGAAGGATCTCAGAGGACAACTCAAAATGGTTGACAGCTTCCATAGGAATAGCTTCCAGTACGGTATACT GTGTCTCAAAAAAGTCAACTACGATAGGAAAGAATTAGAGAGGAGGAGAGAAGAGAGTGCATTAGAGGTC AAAGATGCATTAGTATGGAGCAATGAGAGAGTTATAAAATGGGTGTGTTCTATTGGACTCAAAGAATTTG CCCCGAACCTCAAAGAAAGTGGCGTTCATGGAGCCATTGTCGCTCTCGACGAGACGTACGATATCAGCGC CCTTGCTTTAGCTCTACAGATTCCAACGCAGAACACACAGGCGAGAAGCACGCTGGAACAGGAGTTTAAT AACCTACTGACAGTTGGGACGGAGAGAAGATTGGAAGAGGGTGAACTAGGGAAGTTTAGACGTGGGCCAT CGTGGAGACGTATGTTCAAGAATAAAGAAGCTGCAGCCCATCACAGAAAGGACAAGTTACCCTTAGATCT GACCGCTGGGGAACGTATGGAGGCGTATGGTCCATCCCCAGGCTCTCCAACACAACGTACTATGATGTAT ACCAATCAGAGAGGGGCGGTGGTCCATGGTGTACCTGTTCTACCAACCTCTCCACCTCTTCAGAGGGGCG GGGCTGGTGGAGAAGGCGCGGTAGTACCACCTAGCAATACAACCAATCTTAAAACATACTCGTGCTGACA GAATGTATCACCATGGAAACAGGGACCAAGCCATCCCATCATCAGCTGACCTTTGACACTGGCCAGGTCA TAGGTCGAAGTTCAGGACCTTTATGTTATACTTCATGTTTACTTCAACTGCAGCTCATCCTAGCCATTAT TTAGCCAATGACATTAGATTGGAATAGGCGCGGTGTGATGACATCTTGACATCCCTTCTAGTCCAAATAG TCTCTTCTTCTTCTTTTACATAATTCCAGTTGGTCTGTAGGACGGAGTAATTTATTTCTTTACCTGCATT CAGTAGAAACATTGATTGGGTTCTGCTTCATCATATCATTTAAAAAAGTTAACAAAGATTTTCAAACTCT TAACAAAATGAGAAGGAAACCTTAATGAGTGCATGGATTGAGAGTAATTTTCTCATCTTTAAACAAAATC TAAGATAGCTTGATCCTCACCGTTATCATAGATTGAAACGTTAAATCTCTATAAACTATTTACCTTAAAA AGAGCTATAACTTCCACCTGTAATATCATATTATAACTCGCTACTTGGAAGGCATGTTGCATACATTAGT TAATGCTAGGTCAGGCAAGCATTACGGTTTTATCTACCTAACAACATGCAATGTATGCAATGTACATTTT GAATAACAATTTGTAACGACACTTTTATCATAATAATGATAATGAAACACGTACAGTGAAACCTGTTTAT TGAGACCATCCAATGGAGACAAGAAATGCTGTCTTTGTAGACAGGTGTTCACTATTAAAAGCAGGTTTGA CTATGGTGACATTTGTATAGTGCACTTAAAGCGCTGTTCTGTTATTAACAAACTGAACAGGCATTACATA ATGAAACTGTCATATTATACCACACACGGTATATCCATTACATAATGAAACTGTCCTATTATCCCATACG GTATGCATTACATAATGAAATTGTCCTATTATACACCGTACAGTATATGCATTACATAATGGAATTGTCC CATTATTCCCCATATGGTATATGCATTACATAATGAAACTGTCCTATTATTCGCCATACGGTATATGCAT TACATATAAAATTGTCCTATTATACCTCATACGGTATATGCATTACATAATGAAACTGTCCTGTTATAAC CCCATACGGTATATGCATTACATAATAAAACTGTCCTATTATACCCCATACGGTATATGCATTACACCGT AGTCTCGCCACACTATCCACATGGATTCCAGACCGACCGATGTTTGGCACTTCAAGGGGATGTACATCTT TGTTCTGTCTATCATCGTCGTTACGTATTAGGTTTTTAAGGGCTTCAGTCATCGTACCCAGATCCAAAGA ATTGTTTTTTTTTTCATTTGTTGTGTTATAGAGCAACTACATTCCACTCAAGAAATACAGTCTGTACCTA GCTGTGTAGTGTAAATGAATACTCAATTTAGTAGCCTTCAGTATTACCGATCTGTTCATGTTTGTATGTT CTCCCAGCTTAATCAGACAAATCTAGTCTTGAATGTAGCAAGAAAGTAAACATTATACCAGTTTATAGAT AATTGCATTTGTATTGCTTATTTATATATTTATACATGTAGATGTAACTATGAAAGAAAGAGTTTAGTTT CCATAAAAGAAAGAGTTTAGGTTACGTGGAAAAAAAAGGTTTAGGTTACGCATATTTTAAGACCATATAG GCCTGTAGCTGAAAGTTATCATCAGGCAAATAAATAATAAGAATTTAGAAATACAAAAATGTACTTCTTT TCATGGATTATTACAGATTTTTCTTCTCACTGTCACACATTTGTGTCTTGTGTGTCAAATATAAGTTTAT TTAAAACTACCTCTGCTCACATGTTTATTTATATTGTTTTATCTTCATGTTATTTTTTGTTTTTGATGAT ATTGTTTGTCCGAGATCTTCACTAAATGCATTGATTAAACGCCCACCAATAGTACATGTTAGTTAACCAT TTGAACAGCTGTTTGTCCCTTACATAGCAAGTACATGTCTAATGTTTATTGATAATGATTTTAAAGGCCC ACTGCACTACTGGTAGCTACTTGCGCCCTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds