Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030989033.1 PREDICTED: Strongylocentrotus purpuratus liprin-beta-1 (LOC574986), transcript variant X5, mRNA TTTTCGTAGCATTACCGCGTTCGTGTTATTGAGTATCCCAACATAGATTGCTCTTTAGTACGCACTTCGA TTGCAATTGTTTACGGATTTATCATCGACCGCAGTCGAGAGGTATGACAAGGTGATAGGATCACAGTGTG TCACATGACCCTCAGTCTATTTTCTACCTTCCGTCTCTCGAGATCAAAGTGTGTCACATGACCCTCGGTC TATGTTTTGCTCCGGAGATCGAATACATTCCATGCTCAGCACATGACCATCAATGTTATCCTTGTAGACC ATGACGTCATCCAAACTACCCCATCAACCGCCATCCGCGTCTAAGCCTGCGACACTGTTCTGAACTCCCT GGACATTTTTGGCGCTAGGGGTGGGAGAGTCAATCGCAGGATGCAGTGATACCATCAGGAACATTGTCAG TTGCATGACGCCTTGAAACAGATTCATAGACTTCTTTTGAAGCAGAGAAAGAGAGAGAGAGAGAGAGAGA GAAAGAAAAAGAGAGAGGAAGAGAGTGAGTGACTGACAGAGAGACAAATAGACAAATTGAAAGGAATAAG GCATTTGAAAGCCTTATCCAACCAAGAGTCGTGTTGGAATTTCACGTAAAAAGCTGAGCTACTGGTGGAC TTTGAAGGTGTTTGGACCACACCGCTCTCCATATTGAGCTGCCAACCGCCGCCCATAGAGATCTGGGTTA ACAGAGTGCACCCTGGGACAATCTAGGGTACCTTCTGGATTCTTTTAGTCTCTGACATAGCGACGAAGAT GACAAATCTAGCATCGGATGCAAGCCAGATGCTGGCTGCTGCCTTAGAGCAGATGGATGATATTATTGCA GGTAGCAGAATACAGGGCATGGACTATGACAACGGACCTGTAGTGACCAACAACCAAGTCAACATCACAC ATCCCAAAGAGAACGGATCACATGCAGACGTCCCAAGACTCATCACAGAACTACGCTCAGCAGCAGAGAG ATCCATAGAGAACGGGGAGGAGAACCTACTCCATGATCGGGTAGAGGATTCCACTCGGCAGTACATTGTA CGGTTGCTAGGCGACAAGAAGCAGGAGCTTGCAACCAGTCCAGGGTCTCATGAAAAGATGAAGCGACTTG AAGGAGACAAAGACAGCTTACAACTCCAGGTGAATGTATTGACAGATCAGCTTGAGGCCCAGAACGAGAA GATAGAAGAACTAGAGTATGCCTGCGCAAAGAAAAGTAAACAGTTGGCTGATTCAGAGACTAAGTTACTT CAGGAGTCTGAAATCCACTGTGAACTGGAACAAAGCCAACAGAATTATGCTATAGAGGCTTCTAAACTCA AGGCTCGACTAGACTCTGTGGAGAATGAGACTCTTGTCGTCAGAGAGCGTGCTATCATGGCCGAGTCCAA GATTGAGGAGCAGCAACACGAGATGAACAAGTTGATGTCAAAATATCAACAAAGTCAGAAAATCGTTGGT GAACTGCAAACGGAATGTCATAAATGGCAGGAGAAGTACATGGAAACGCAGGTCAAGCTAGTTAGGTCAC AGACGGAGACAGCAGAGCTCAAGGCTCGTCTGCGCTACAGCCATGCTCTTCTTGATGATCTTCAAGCCAA GAAAGTCAAAACTCTAGATAAAGAAGTAGAAAAAGAGAAACTAAAGATTGCTGTAGATTCTCTGATAGCT GGCAACAAAGAAAAGGACAAGACGATAGAAGATTTGAACCAGAGGTTATCAAAGTTCTACCATGTACAGG AAATGGCAGCCATCAATGGAAGAGTTGAAATAGATATGCTGCTTGACATTGAAAACCAAAGAACAGATAG TTTCTCAACCTCCAGCTCAGCTACCGGAGAGACAGACACATCAAAGGATAGCCACCAGGTCCCACAAGGA TCCAGCCCAGTCAGTCCAGACAGAGACTACACCATGATGGTGGATAGGACTGAGGAGATGTTTGGGTCCA AGACCAGCCGACGATCGGCAAGTCTGGAGAATCTACAAACCAATGTCCTACCATCAACGCGTATGAAAAA GGCAAAATCAACTATGGGTGATTTAGCAGCCAGAAGCAGTCCCTCGGGCTACAGGACGCTGCCCTCCCCT CGTAGGAACCAAGAGTTTGATCTTCCCAACAAGCAGCAACAATCGGCTCACGGCGGCACCCCAGAGCCTA GGAAACCCAGAGCATCGTTCGGAAAGGGACTCTTCAAAATCACCTCCAAAAAGACTTCCAGTGCTCCAAA TCTCGCCATGACAGAGTCAGAAGGGGAGGATGCATTAGGGGTACAGAGACCAAGAAATGTTACCTTCCAG AGTCTGGAGAGGGGTGGTTTTCCCGCCCCTCCAGGGACACCGCCCATGGAATACCGCAAACGTAAAGGCA TCAAGAAACTCATTGGAAAATTAAAGCGTAGTGGATCAGTAAATCTTCACAATGGCGATGAGGATGAGGA AGCCCCGGTGGAGTTCTCCAGAAATGGTCGTTTCAGAGCCACAGCAGGACCAAGACTAGCCTGGTCTAGG GACCTCAAGAAGAATGAAAATGGGAATGGAACCAGTGAGCTGAACGCTCCATTTGCCAAGTGGGACAGTG AGCAGGTAGCTGATTGGTTGAGAGGGATGGGTCTCGCTCAGTACGCTGCAGCTTGTAGAGTCTGGGTTAA GAATGGTGGAACGCTGCTTGGAGCTGCTCCTCTGGAGCTTGAAAAGTACTTGGGTCTGAAGAATCCGTTA CACCGGAAGAAGCTGCAGCTTGCCCTGCAGGCGATGGGATCAGAGTGTGAGGACAAGCAGGGCGACCTGG ACTACCACTGGGTCACCAGGTGGCTGGATGATGTGGGACTACCTCAGTATAAAGATACCTTTCTGGAAGC TAAGGTCGATGGCAGAATGCTGCACTATATGACAGTGGACGATCTGTTGCTGTTGAAAGTAACGAGTGCC TTCCATCACGTGAGCATCATGCGTGGTATTCAGTGCCTACGTCTTCATAACTTCCATCCGAGCTGTCTTA GGAGAAGACCCACAGATGAGCCTTATGAAACAGGGACCCAGGTTGCACTATGGACAAATCACAGAGTGAT GGAATGGTTGCGGTCGGTAGATCTGTCTGAATATGCACCTAACCTCAGGGGCAGTGGGGTACATGGAGGA TTGATGGTCCTCGAACCTCGATTCACGGCCGAGACTCTAGCCTCCATCTTGTGTATCCCTGGAAACAAGA CGTTGCTACGGCGACATCTGAGCACTCACTTCATCTCTCTGATTGGTCCAGACATTCAGCAGCAGAAGAG AGAAGCAGAGAAGCAACCCTTATTTGTACCTCTCAACTTCCTGGCTAAGGTCAAGCCTAAAAAGAGAACG TTTGGCAAGAGCAGACGAGGGACTGAAATGGAAGACTATATTTGCCCAATGGACCTTGGTCACCCCTCCA ATCTGAATGGTCTGTCTCATATGAATGGTAACAGACCTGCTCCACCTAGTTACAAGGTGGAAGTAAGAAG TGCTGGAAAGGTGCACAAGCAAATGGATGAGGATCAAGCAGACGGCCCGGAAATGAAGGAGGGAACTGCT CAAAAGTTTGGCGCCCTCTCCCAAGAAATTGATTCCTTGACGACCATGCTCTCAGACTCGGATATGGATA GGAGTACACATGTGTGATGTCATCATACCAACCTCTCACCCAGATGGGCCTAGGCTTTGATGTCATCATG CCAACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCCCCCAGATGGGCCTAGG CTGTGATGTCATCATGCCAACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCA CCCAGATGGGCCTAGGCTGTGATGTCATCATGCCAACCTCCCACCCAGATGGGCCTAGGCTGTGATGTCA TCACGTCTCATCCAGCTACAGTCAAACCTGTCTATAGCGACCGCCCAAAGAAAACACAAAAAGGGGCCTT TGTAGACAGGTTCCTTTAGTACATGATTCAATGAGAAACCATTTTCAAGGGAAACAACAAATGTGGCCTT TGTAGACAGGTGGTCACTAAAGCAGGTTTGACTGTATTACAAAGTATTGCCTTTGTTAGAAAGCTGAAAC CAAGCCCTACTGTATGAATGCTACATTTTGATTGGCTGATTAGCTGATTGTATCAATGTCACTGTTGATG GCAATATGCTGTCAATGTTTTTTCACTAGCTCTTATAACATCAGTCCACATTCACATCAATTGCATTCTA AGAAAATTTGCTGATGATGTTTCTTTCAATGAATGACATCTAATTTTTTTATATTTCTTACTGATAAAAT GTACTTTTTACTGCATGTGATATCTTTTAGGCACTTATTATAGTTTGCTCACACTGTCTGTAAACTGGTG AGGACATTTTAACAAAGAAGGAAAAGTAGAGCCACAATCAAAACCTGCTGATAAGAAGTATGGAGCTTTT TTTTTATCATATGATCTCTTCTTCCTGATTGGTGGATAATATGAATGCTGCTTCTGATTGCAAGTTATTG GCCAATCACATCACAACCACTAGGTCTTTGTGCGTTGCTCAACCATACAGGAGCTACCCAGCTCCCATAG GCAATGCATTCTGCATATTCTTTGAAATGCCGTTACTTGAAAGAATGCAAAGATTTATGACTTTTTATTC GATGAATTACAAGGACTAGGAAGTGTTATGGTGCTTGGTCTGACTAGTCTGTTCACACATCGCAGGCAGA TTTATTTCGTTTGATTTCTTTGTAACATTTTTCATTTTTAATTTGCTTCTTACAATTGCTGATAGATTTG TGTATCAATTGAGGACAAAAAAGAGATATTGTTTTGAACTCTTTTATTTTGCAGAAATGATATTGATTTG AAAAATGTTTAATTCATTAGCTGAGAGGAATTTGATTTACTTTGACCATCTCTATCCTCCTACAATACAA TATACATAAATTGTGTGAGCCCATCTTTATCACTTATCAGCAAGTGGTGTAAGCTCCATTTGTTTTTCTG TGTTCTATCTAATGAAAACTCATTGTAAGTAAAATAACAACACCCTCCTTTTCTAAAGAAATTTAAAGAA CAATTCACAAATCTCTTTCACTTCTATTTTTGGAAACCTCCAATATATATATATATATATATATATAGAC ATGTATATTTATATATTACTAAAGGCGTATTTAGAGGGATATTTCAAGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds