Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT104625.1 TSA: Strongylocentrotus purpuratus WHL22.139065.1 mRNA sequence ATAAAAGCTCCTACAGGTGCTTGTGCGATCATATCGGCCTTCTGATTGGCTGATGATTACTCATGTGATT CCGTCCAAAACAGGCGCGCCATTTTGACCGTGCTTTCCGTGCATAGAATGCATGCAGTATTACACGCACG CTAAGTATGCACACATTACACATGCGCCGTATATCTCCAACGTGTAACGTGTTTTTATTTACATCATTTG CATTTTTGCGAAACGCCACCATCGCTGAATCAAATTAACGGGAAGTGACAATTAATTTCATCAATATCTA ACGGTTTTTCTCAATGAATGATGTCTTTAGCCGCACCAATGAATTCCTTATTTCATCGAGGTGTTCATGG ATCGCCTTCCCAACGCCTTGATTTTGGCGATGCTCTTGGTTCAGAAGGCGAAAGTGACGCGAGTTTTGCA GCTTATTCCGATTTCAACGAAATACAGGAAGGAGCCATTGATGATCACAGTCCCATTTCAAGTTCATTTT CAGACGACCGTGATGATTCTCTTAACCTTACAGCAGAATGGGATCCCGCCTTGGCAACTCCAAAAAGCAG TCCATCAAGACGGCGTGTACAACGTAGACCAAATTCAAGACTCCACGATGGCGAAAATTCAATCGCATCG CCTCATTTTCGAAGGCCAAGCGACTCAAGTTGCAGCCCCTCTCCGATGGTATGCGCAAGCAGCCCCGCCT CCTCCGCTGGCGGGGGCGACGCCGTTGGATCTCCACCCCCACACAAGAGGCTGCGAAACCTCAAACTTTT CGATTCACCTCACACACCCAAATCGCTGATTCAAAAGGCAAATGCTAGTGCTAGACGAAACAAACTTCTA GCAAGTAGACTGTTCAGCGAAAAACCTGCTAGTTCTACTCCTACTGATCATGGCGATGGGCCTATTGCCT TTGGCATTGCGAGGCCGCACACGGCTCCGAACATGAGAAATTTACAGAGAAGAAGCACAAGAATACCCAA GACAAGACAGCAGAATGTAGCTAATGTCAACCCTTTCACTCCGTCAGCCATGCTGCAAAATGCGACCAAG AAAAGGCTTCGACAGGAGAGGAGTATTCTAGATGATGATGAAGACTTGGATGATGACATGGATGGTAGTT ATACAGAAAACCCAGCCAAGAGGATAGCCCTACGAGACAGTGACATCTCTCGCTATGAGGCAGAGTTTGT CGAGGTCGGTAAGGTTGGTTCAGGGGAGTTTGGTTCCGTCTATAAGTGTATCAACAGGCTTGATGGATGC TTCTACGCCATCAAAAAATCAAAAAGGCCCATCGCTGGATCGGCTTTTGAACAAATGGCTCTGAATGAAG TGTATGCCCATGCAGTGCTAGGGACTCACATTCATGTGGTCAGGTACTACTCAGCTTGGTCCGAAGCAGG TCACATGATCATACAGAATGAATACTGTAATGGAGGTAGTTTAGCAGACATCATCTCGTCAAACAAACAG AACAACCATAGGATGACAGAGATAGAACTCAAGCAGGTCCTGGTCCAGATAGCCCAAGGTCTTAAATACA TCCACTCAGAGGGACTAGTCCACATGGATATCAAACCAGGAAATATCTTCATCTCCAAGAAGGAGCCCCT CCCATCCACCACACCGGAGTCCGAGAAGATAGATGAGGAGGAGGAGGAAGGAGCCACGGAAGATAACACC CCACTCGCATCACTTATTTATAAAATTGGTGATCTGGGTCATGTGACTTCAATCTCCAATCCCAAGGTAG AGGAAGGTGATGTCAGGTTCTTACCGGTAGAGATCTTACAAGAGGAACACACCCATCTGACCAAAGCAGA CATCTTTGCCCTAGCTCTGACGGCTTACCTGGCGGCCGGCGGTGAATCCCTGCCGAAGAACGGAGATGAT TGGCACAGAATAAGACAGGGTCATTTTCCTCCCCTACTACACATCTCAACTGACCTAGTAGATCTATTAC AGACTATGATCGACCCAGACCCATCACAGCGCCCCTCTGCATCGGCCTTAGTCCAACACCCTTTACTATG TCCTAACAGCAAACGATCCTTCACCCAACTCAAGAGGGAGCTAAACGTCGCTAAGTTCCAGAATGCAATC CTCTCCAGAGAGCTGAACGAGGCCCGTAAGAGCACCATGAACCCTCCTCCCAAGTCAAGGTCAAACGCAG GTCGACTCATCGGCAAGAAGGTCAATCGAAGTATGAGCCTTACCATCTATTGAAGACTGATCCACTTACC CCTCCAAAGGAGAGCTGATGATGATTACATCTATGTGATATTACCACATACAGTCACATTTATATCATAG CCACAGGAAACCTAAGTGCGAGACTTATACACCCATTAATGGTGTTTCCACCAAGTCTGGTAAAAGGTCA ACCGAAGTATGAGCCTTACCATTTATTGAAGACTGTGATCCCCTTACAGGTTCAGTTAGACATACTGTAC ACTACCCCCTCCCCCAAAAAACTATAACTTTCTTTTATAATGAATGGCAAGAGGAATTATTTTGGGTGTA GAAACAAGACATTTCTGCCTGACATGGTATTTTATCTTGAAGAACCAGTATGTGTACTTATGGCAACAGT TTTTTAATCATTTTTTACAATCGATAAACTAAGGGTGAATGCTTATTGCGTGTAAATAAAATTGCTCTAT GTGTTTGGTTCGCTATCTAGCAAGAAACAAAGTTATGATGTAATTTCTGCATTTATCTAAGTATCTAAAG TTGTCGAGGCTTCATGGCCAGTCATTACAATTTCAATATTTTTCTAGGCAACTTTTTATTAAGATCATAC AACACATCTTGCCTCTACTATTGCTCTGTTGTTAATTTCTTAATTGAATTCTATTCCAAAGTGCAACCCT GGACCGAATATACTTAACTCGCACACAAATTTAACCTAAAACCCTATCGCAACCGTAAACTTCAAGCAGC AAATGTTGCGAAAGCATTTTTCAGATGCCTGTTCTTACAAATTTTTGACAAATTTTCTTATGGTAGTTGG TCAGATTTTATCTCTTTGGTTTTACTTTTGAAATCATTGTCTTCTGTTTTGTACAGTTATTGATGTTTAA ATGTGCCATGTTACTTTTAGAGTATGGAAAGAAATTATTTTAAATTGTGTTTTACAAAGCATTGAATTTC TAGTCAAAAAGACAATACTTAGTGTTTTAAAGAGTGAAGTAAGTTCTCTCATTGTTACATGTGAAGGAAT TCTTTTGAAATTACATCACATTCCAAGTGAATTTACTCAATTTAGAAAAAGTTCTGATGCCACATGTTTC TATAGTGTATTCCCACACAATACTGTGCCTTTCACTGTATGTGATATTCAATATGCTAGACCCCCAAAAC TCTTATCATTTTGATGATTCCAAAACTTCACAGTTCATACTGATTCTTATGACCTAAGTAGTCAACCTTT TTTTTCAATGATTGGATGGATAGTTTCATTTACAATTATCAGTATTACAATTTTTAAAATGTTCTCTGAA TGGAAATTCAGAGATTAATATGAAGCAGTTGTTTCGCCCTTTCCTTTCATGGAATTCCCTAAAATACTTC CTTTAATGTGTGATTTAGTGATGAGATGAAGTGGGGGTACATTTATTATTCTATATTCATCAGTATTCAA CCATTTATTCCCTGGCTGTGGCAGTCTGCTTTCTATTTTAGAGGTCAATTTTGTGATAGATCACAACAGG GATAGTTAGGATTTAGCAAGGCTTTATGTATTCCTTTATTTTGTTTATGTTGGTATGTGTTTATATGTCT ATGAGCCAGGTATATCAAGTGTAAATGTTTTGCTTGATTAACTCGTTCTTCATTTCATGTATTATTTACC TGTTAAAGATTTTATGTACCTTATGATTACGTTGAAAAGACCTATAAATTTGTATCACTTTCTCTTTTTA TTATGATATTGTGGAGATGTATTTATGAACTCCAATCCGTATAAATGATTTTAAATTTGTATTCTGTGGT AAAACTCTTGTATTCCATCAAAACTACTCTAGAACCTGAAACTTTTTCAAGTATTATGACAGCTTTTTTC ATCATGGCTTTTGAGGTTTCTTCCTCATGAGGGCATTGGTTTTATGGTTATGTATCACAAGATTTGAAGC TCTTCAATTTTAAAGTCACCTTTTATCCTCTAATGTTGTCATAACATATACTAGCACCTCTACCGCAACA TGTTAAGTCTCAGTATTTTAAAGTAGTATTATTTTATATGTTTATCGTAGTTATCTGAATCAGCTAAGTA TATCTGATCACATGAAAATGAATATCTTCCACTATGTTTAAATCTTAGTGTTTAGTTTATTTTACAAATG CATTTGTTCTCTTTTTGAGATGTATATATTATACTATAAATCAGTACTTTACTAGCAGATACTAATGTAT ATAGCCTTCCACAATGCTTGTAAATACCGGTAGGTCAGTACTTTTGTCATTGTTACATGTACATGTATGT CAAGTCTTGTTCGACTTGAAATACAGATATATTTGATATTATTTGGGCATTTTTTTTCCCTTCTCATTCT TTTCTAATTTAACATGAGCTGCATTGGGTGTTTCTAAAAGGGGCATCTTGCAATGTGTCTCTGTTTTTCA GTTTGTTTTGGAGTTGATATTAAAATAATTCCGATATGATGTCTTCCTCATTCACGGTCTCTCTGACCAA TCAGAGAGCTTCGCTTTGTATAAGATTACACAACGTATGTGTAAAATAAACATTTACGTCTTCCTATGTA AACTCTACATGCCTAAGATTATGTTCAGGTACAGTCAAACCTGCTTCAGCGACCACCTGGCTACAAAGAC CACTGTTCTTGTCTTCTTTAAGTGGTCTTAAAGACAGGGTTGACTTTATACTGATTTTATAAGGTTATCT GTTGCTTAAAATCTTGTTTCTTGGTGTATTATCAAAGTATTGACACATTTTTGTGCCATTAAGTCATCAT TTGTACAAGTCAGTATTCCATAATGGTAGAAATTTTATTGCCTTTTTATGTATTAAGTGGAAGCGATGAT TTTTATTTGTTGTCCAATTGTGCCTTATTTTCATCCATCGTGCCTTATTCTCTTTATTTGAAACCAACTT GATTTGGTGATTGATGAAATCAGGGGGTGTGTTTCACAAAACTTGCCATCAGTGACAAATGACAGTTTTC GTTATAAGCTAGTGAAATCTTTGCATCTGATTGATTATCAGCAGATTTGTCACTGGTTTTTGTAATTTGT CATTGAAAAAGGCTTTGTGAAACACCCCCAGGAGTATGTATATATCTTGATTATATGACAATGCAATGCA CAATAAAGTGAGCAGAAATTAAAAAAACGAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds