Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030986484.1 PREDICTED: Strongylocentrotus purpuratus ATP-binding cassette, sub-family B (MDR/TAP), member 4 (abcb4), transcript variant X3, mRNA TTACTGTGGAATGATACAGGTTCCTTGAGTCTTATATAGGGCGAATTTCTCTTGTGGAAACCCGTTGGTT TAAGAAGGCCTAACATTACTAAGGAATCACGGTGACTTCTCTCATATCTTTCTTGAGTTGTGATTTCGTC TTCGAATGGTTAACGCACGGGGAGTTACTGTGTAAAGATCTGATGTCGTGGAATACTTACGTACGGGCCT TCGATTTTTGTGCGTGACGTCAGCATTGGATTCAATATCTTTCATTTGAATATGGAATTGGGGCTCCAAG TGATTCGGGATTATTAAGAAATACTTCAGTAAAGATAATTTGGCGGCACCCACCATGGATAAACCAGGTG AATCGCCTGAGCGCACCCCATTGCTCCAACAACAGAAAGCACGAGCAGCCGAACAAAAGACGATATTAGC CGAAGAGAAGCCGAAGACTGCCGGGATGGTGGTGGAAAACGGACATACGAAAGGCCTCGACGACGACGGC ACTGAGGTCGCGTTCAAGAATGGGAACTACGGTGCAACCAATGGAAAGGACACCGCCAACGGAACCATCA AGGGAGAGGAAAAGAGTGATGAGAAGGAAAACGAGAAAGAGGAAGAGAAGCCACAGGTCCCTTTCACGAG ATTGTTTCGCTATGCTACGGGTCTCGACGGCCTCTTCATGTTTATCGGCTGTTTTGCCGCGGTCTGCCAC GGCTGTGCCTGGCCGGCGCTCAACATCGTCTTCGGCGGTCTCATCGACGAGTTCGTTGATTTCGACAAGT TGAATACCACGAACACCACGGATTTCACGGCTACTTTACCGCCGGGTTTGGATCCGGCCAAAGAGTTTGA TAACCAGATGCAAATGTACGCCGTCATATTCACCTACATTGGCATAGGTGTCATGGTGATGGCATACCTG CAGTCATCGATGTGGACTCTTGCCGGCGAGAGGCAGATCTATAAGATTCGTCAGGCCTTCTTCAACGCCA TCTTGCATCAGGAAATCCAATGGTTCGATGTTCACAAGAGTGGTGAACTCACGTCCAGGTTGGCCGACGA CATGGAGAGAGTGAAAGATGGACTCGGAGACAAGATCGCTCTCTGCCTGCAATCTCTCTCTCTATTCTTG GCTGGTTTTGGTATAGCCTTTTGGAAGAGTTGGGAATTGACCCTCGTTCTTCTATCCACGACCCCTCTAC TAGCAGCAGCTGGGGGCTTCATGGCTTATTTTCTGACATCCTTCGCAAAGCTAGAGCAGGAGTCGTACGC CCAAGCCGGGAGTGTCGCGGAGGAGGTTTTGTCTTGCATCAGGACTGTCATAGCATTTGGAGGAGAACAG AAGGAGGTCACTAGGTACGAGAAGGAGCTGAAAGAAGCCAGAGATGTGGGCGTGAAGAAGGGCGTGACTT CGGGCGTCGGCATGGGTATCACCATGTTCATCATGTTCGGGTCCTATGCACTTGCTTTCTGGTATGGGCC TAAACTCGTTGCCGATGGGCGTATAACTGGTGGTGACGTCATGATCGTATTCTTCAGCGTCATGATCGGT TCGTTCTCCATCGGCAACATCTCGCCTTCCATGACAGCAATCACGGCAGCAAGGGGCGCGGCAGTGACCC TCTTCGACGTCATCGATGCTAGGCCAGCTATCGATACTCGCTCCAAGAAGGGGATCGTACCGGCAGAGAT GACGGGGAACATAGACTTCCAAGGGGTGGAATTCTCTTACCCCACCCGGGACGATGTACCGGTGTTGAAA GGTGTAGACCTGAGCATTAGGAAGGGGCAAACAGTGGCCTTGGTGGGGTCCAGTGGATGTGGCAAGTCGA CCACTATCAACCTGCTCCTACGATTCTATGAAAAGTTGGGTGGCAATATCCTAATCGACGGGCATAAGAT TGAAGAGCTGAACCTCCACTGGTTGAGGAGACACATGGGTGTGGTCAGCCAGGAGCCGGTCCTCTTCAAC TGTTCCATAGAAACCAACATCTCTTACGGAAGAGACGGTGTCACCAAGGAGGAAATCATCAAGGCTGCCA AGATGGCCAACGCCCATGACTTCATCTCAAAACTACCCAAGGGTTATGATACGATGGTTGGTGAGCGTGG AGCCCAGCTGTCCGGTGGTCAGAAGCAGAGAGTAGCCATCGCCAGAGCTCTGGTCAGAAACCCACCTATC CTTCTACTGGACGAAGCCACCTCAGCCCTGGACCGAGAGAGTGAGAAGGTCGTACAACAAGCTCTGGATA AGGCTTCGGAAGGTCGCACAACCCTCGTGATTGCTCACCGCTTGACTACCATCAGGAATGCTGACGTCAT CTACGCCTTCGAAGACGGGCGGGTCGTCGAGTTTGGTGATCACGCTGAGCTGATGAAGAGAGACGGGGTC TACAAGCAGCTTGTGACCCTGCAGACTCTTGATGGTGCTGGTGAGGAATCAACATCAACTTCAAAAGAAG TTGTTCGAAAAGAATCCATCAAACGACTACCATCTCGTCAAATGTCTCGTCAGATCTCACGACAAATGTC CAACGGCAGTGGCAAAATGGAAGAAAGTGTTGAGGTAAAGGAAGAAGTTGAGGAGGAGGAGGTGGAGGAG AGAGGTTATCTTGAAATCTTGAAGATGAATAAACCGGAGTGGCTTTACATCGTTGTCGGCTGCGTTTTTG CTGGAATCCTTGGAGTCGCCATGCCTGCTTTCGCTATTCTTTTCAGCGAGGTCATCGCGATCTTCAGTTT GCCCGCTGACGAATTGAGAGAGGAATCTGTTTTCTGGGCCCTGATGTTCCTGGCCCTCGGAGGAGCATTC TTTGTGAGTAACAGCGTCACCGGTTACTGCTTTTCGATCTCTGGAGAGGAGTTGACCCTGAGGCTTCGCA AGAAAGCGTTCTGGACCATCCTCCGTCAGGACTGTGCATATTTTGACCAACCAAGTCACAGTACTGGTGC CCTTGCTACAAGGCTATCATCAGACGCATCAAATGTCAAAGGGGCCACCGGAATGCGCATCAGCACCATC GTGCAGGCTATCGTAACCATGGTCGTCGCTATCACCATTGGCTTCGTCTTCGGCTGGAAGTTGGCTCTCC TCATCTTCGGTTGCCTCCCGGTCCTGGCCCTCTCCGGTGCTCTTGAGATGAAGATCCTCCAGGGTGGGCA TGAGAAAGACGCCGCCCTCATCGAGGAAGCCGGCAAGATTGCCGCCGAAGCAATTGAGAACGTTCGTACT GTAGCCTCTCTCAACCTTGAGGATAGGATGATTGCGAATTATACTGAGCAGCTGCAAAACCCCTACAGGC AAGGAAAGATTAACAGCCAGATTAATGGTCTGGCCTTTGCTGTCTCCCAGGCGATGATCTTCTTCATCTA TGCAGCATCCTTCCGTCTGGGAGGATACTTGGTATCCATTGGTGATATGACAGTAGATGAGGTCTTCAAA GTTGTCTTTGGGGTTGCTTTTGCCGGCATCTCGGTCGGTCAGTCACTGGCTTTCCTCCCAGACTACGCCA AAGCTCGCCACTCAGCAGATCTTATGCTCCACCTGTTCAGCATCAAGCCGCTCATTGATAATTATTCCAC GGATGGTGCTCAACCGCAAAAGGTGGATGGTAAGATCGAGTACAGTGGTCTCAAGTTCTCCTACCCAACT CGACCTGACGTCACCGTCTTGAAAGGGCTGAGTCTCACCATCAAACCAGGCCAGACCGTAGCCCTGGTAG GAGAGAGTGGGTGTGGTAAGAGTACTCTGGTGTCACTCCTAGAAAGATTCTATGATCCTGCACAAGGTTC TGTGGCTCTCGATGGGACGCCTGTAAAAGACATCAACATCCAGTGGCTGCGAGCAAACATGGCGATTGTG AGCCAAGAACCAATCCTCTTTGCATGTTCTATCGGAGACAACATCCAATATGGTGTCGAAACGCCAATGG AACAAGCGGCTATTGAGAATGTCGCCAAGATGGCCAACATTCATGATTTCATCGCTTCTCTTCCTCTTGG ATATGATACTCTTGTAGGAGAGAAAGGAGCCCAGCTGTCCGGTGGTCAGAAGCAGAGAGTAGCCATCGCC AGAGCTATGGCTAGAAATCCTCGTATCCTACTCCTGGATGAAGCTACCTCAGCACTTGATACAGAGAGCG AAAAGGTTGTCCAGGCAGCCCTTGACAATGCCATGCAGGGCCGAACATCCATCGTCATCGCCCACCGTCT CTCCACCATCCAGAACGCTGACACCATTGCTGTAATCAGAGAGGGAGTGGTCGTCGAGAGCGGTAGCCAC CAGGAACTTCTCCAAAGCAAGGGACACTACTTTACGTTGACCGGTGGCAAGATTGATGTGGAATCCGAAT AGACGGAGAAAAGCAGAGATTGTCTTTCCGAAACTAATACAGATTCAAACCAGGAGTCTTGAAATGCTGA CCAAATACCTCTCAGTAGGTGCTGGTTGCAGAAGTTGTGTTAAATGATCAAATCGTAGAGCCAGATATGG AACGATTGATTTGGTCAAATTCCAAAAAAACTATTGAATGGCCAAACGTGTAAATCAGGAGCGTTTTTGT ATTCTTACTAAAGTTTATAAACATTATCTTGTATATTTATCATTCTAAGAGATAGTGGAATCATAACCAT TGTAGCACTGATTGTATTTGTTGTGAGCCTGTCGTTATAGAACACTGAGGTGCCTAAAATAGGTTTTGCT ATTCTAATCAACCCCTCGTTGGGGGATCCGCCTGACAAATTTCATACCATTTTATACATTCTCTGACCCT TTTCTCTCGAGTCTTGTCCATCTTTCTTGTCTTGCACATCTTTTGACTTGTTAACAACGGTTACAACAAT TGACGGTTATAACAATTGACTTCTGTTTCGATGTCACAAATGCTTTCGTGAACTTGTACATCTATGCATC GAGACGAAAATGGAGGATTCTTATGCATAAACAAATAGGATACTGCTTTCTCTTTTCTTTATTCTTTGTA CGCTTGCAATCAGGTGAATTTTAGTAAGAGGAACTTCAAAGTTTAAACGGGCCTCTACTTTACTTTCTCT ACCTCTTTCTGTGAATGATGTAATGTAACCTAATGCATACCAAAGTATTTTCGAGGTTAGTATCTGGAAA TAACAGTGCCTTATGATATTGTTTATTTCATTTTGTTGCGACTGAACTGTACGTGTGTGTCACCGTAAGT GCATGACGGGATAAATGGTAAATGATAACTCCCCCACACATGCACTAACACATCAACAATATTTGTTGTC GCAGAAACATTAACTACCGGCTCTTTTGTGATATTTTATTCATGGTATCTTGTAAAGATAAAACTGACAA TGACAACCTCATTATGGAATGGAACAAAAGTCATATTGTGTTTAATGGTAGTTAATGCAGATATCTTTGA GAAGTGTTTTTTAAAGACTGGTGCAACGATGCATTTTTCTCTTCTTAACTTGAGATTACTTTTGCCGAGT TAAATTGCCTCTACCGTGTGAATCAAAAAAAAGTTTACACCTAGAAAATTGCTAATTATTTGTAAAATCA TCTATGAACAGTAAATTATGATACATCTTATGAAAGAGTGTTTAATCCCAAATCATTTGGTACCATTTTT GTGTGATATTCCACCTGTTCATCCAAGCGTGAACAAATACCACACAAAAATGGTACCAAATGATTTGGGA TAAAACACTCGTTCATAAGACACAGTTTAATGTTCATCAATGATTTTTTAAATAATTAGCAATTTTCTAG GTGTAAACTTTTTTTTGACTCACTCTCTATTCCACACGTGTTTACTTAATATTTTTGGGTGTGCATCGTA GCATAACCTTGTCAATTTGGTACCAAAGTCGGATTTTCCCATTTTTTGTGTATATATATATGATACATGT AGTACCCATGTAAATATTTAAATTATTCATAGAATTGATGGAATTCAAATCAGCTTTGAGTCGATATGAT AAAAAGTGTGTCGCTTTTCCAAATGATGTCATGAAAAATTTGTATAATTTTCACGGCAAAATATGAATAG CTTTTTTTTTCGGGGCTCATGTTGGCAATTTTGGTGGCATTAATCCTATGTTTTTCATTATTAAAAAGAG TTCATTATTAAGCATGTTATCTTAATCATCAGTTGTATTTTATACTTAATTAAAGATATTATCTTTTACA GAAAGTGTTTATGCATATATGGCACATAATGATCTTTTATTGATAGCGATAGAGATGTATTAATCAATAG TGAAATTGGTGATTTGGTTTCTTCAATACCACCTGTAGCCTTTAGCAAATTATGTTTGCATTTGATAAAA AATATATAATAGTTTTGTTTTACTGAACATGTTCACATTTCGATGTAACAGAATGCAGGATACATTTAGT TTTACGTTCACATCAACATTATCATTTTATCTCTATAATCATATACATTTTATTGTAAGATATACATTTT TGTTATCATGACATTTCCTATATTTGTATAATATATGCAGGGGCATTCCTAGCCCATCTTAAAAAGAAAG TATCACTTTTCTTTGTTTATCAGCAAGGTGGTGGGGAAAGGTTGTTACCCACAAAATCCCCTCTAATTGC ACTAAATCTTGCGTCTCACCATTATATCCCAAGTCTCAAGGATGGCTTAAGGATTCTTGATAAAAAAAAG GGGGAGCGCACGGGTCAGAACATGAATTGACTACCAAAGAAGAAATGGTTATCAGATTTGTAGGATCGAA GTTTAAGAGCCCTCTGGGGCAAAAAAATGATGGCAGGGAGGCGCATTTCTCATTTAAGAAATTTTGGTAC GCCTCCTACTGTTCTTCACGCCGTAACAAGACAGAAACCCGCCCTCTGCTTCCCCTAACGATAATCCTGC ACCTCTCCTGACCTTTTAAATGTGTGTTTCATATTCCAGTCTTTTGCTTTCATGCAATAAGTAGTCACCT ATTATTGTATTCATCACCCCATAGTAAAATGAAGTATTCATATATATATATATATTTTGTTTACCTGTTG TAGATCACATTTTATGTGAACAGTCGATAGTACCGGTCAAATAAAGTATACTACTTTTAACACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds