Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030986487.1 PREDICTED: Strongylocentrotus purpuratus ATP-binding cassette, sub-family B (MDR/TAP), member 4 (abcb4), transcript variant X6, mRNA GCATAAGTTTATCCCGCGCTTTGACAGTGGACGCATTTCAAAGGAGTTGTACATTATAGAAATTGGCATA ATTTCATTGAATGAACAAACAGGATCGCATTTTTAGCTGTGCATAGCCGAGGGTTCGAAATAAGGTGAAT CGCCTGAGCGCACCCCATTGCTCCAACAACAGAAAGCACGAGCAGCCGAACAAAAGACGATATTAGCCGA AGAGAAGCCGAAGACTGCCGGGATGGTGGTGGAAAACGGACATACGAAAGGCCTCGACGACGACGGCACT GAGGTCGCGTTCAAGAATGGGAACTACGGTGCAACCAATGGAAAGGACACCGCCAACGGAACCATCAAGG GAGAGGAAAAGAGTGATGAGAAGGAAAACGAGAAAGAGGAAGAGAAGCCACAGGTCCCTTTCACGAGATT GTTTCGCTATGCTACGGGTCTCGACGGCCTCTTCATGTTTATCGGCTGTTTTGCCGCGGTCTGCCACGGC TGTGCCTGGCCGGCGCTCAACATCGTCTTCGGCGGTCTCATCGACGAGTTCGTTGATTTCGACAAGTTGA ATACCACGAACACCACGGATTTCACGGCTACTTTACCGCCGGGTTTGGATCCGGCCAAAGAGTTTGATAA CCAGATGCAAATGTACGCCGTCATATTCACCTACATTGGCATAGGTGTCATGGTGATGGCATACCTGCAG TCATCGATGTGGACTCTTGCCGGCGAGAGGCAGATCTATAAGATTCGTCAGGCCTTCTTCAACGCCATCT TGCATCAGGAAATCCAATGGTTCGATGTTCACAAGAGTGGTGAACTCACGTCCAGGTTGGCCGACGACAT GGAGAGAGTGAAAGATGGACTCGGAGACAAGATCGCTCTCTGCCTGCAATCTCTCTCTCTATTCTTGGCT GGTTTTGGTATAGCCTTTTGGAAGAGTTGGGAATTGACCCTCGTTCTTCTATCCACGACCCCTCTACTAG CAGCAGCTGGGGGCTTCATGGCTTATTTTCTGACATCCTTCGCAAAGCTAGAGCAGGAGTCGTACGCCCA AGCCGGGAGTGTCGCGGAGGAGGTTTTGTCTTGCATCAGGACTGTCATAGCATTTGGAGGAGAACAGAAG GAGGTCACTAGGTACGAGAAGGAGCTGAAAGAAGCCAGAGATGTGGGCGTGAAGAAGGGCGTGACTTCGG GCGTCGGCATGGGTATCACCATGTTCATCATGTTCGGGTCCTATGCACTTGCTTTCTGGTATGGGCCTAA ACTCGTTGCCGATGGGCGTATAACTGGTGGTGACGTCATGATCGTATTCTTCAGCGTCATGATCGGTTCG TTCTCCATCGGCAACATCTCGCCTTCCATGACAGCAATCACGGCAGCAAGGGGCGCGGCAGTGACCCTCT TCGACGTCATCGATGCTAGGCCAGCTATCGATACTCGCTCCAAGAAGGGGATCGTACCGGCAGAGATGAC GGGGAACATAGACTTCCAAGGGGTGGAATTCTCTTACCCCACCCGGGACGATGTACCGGTGTTGAAAGGT GTAGACCTGAGCATTAGGAAGGGGCAAACAGTGGCCTTGGTGGGGTCCAGTGGATGTGGCAAGTCGACCA CTATCAACCTGCTCCTACGATTCTATGAAAAGTTGGGTGGCAATATCCTAATCGACGGGCATAAGATTGA AGAGCTGAACCTCCACTGGTTGAGGAGACACATGGGTGTGGTCAGCCAGGAGCCGGTCCTCTTCAACTGT TCCATAGAAACCAACATCTCTTACGGAAGAGACGGTGTCACCAAGGAGGAAATCATCAAGGCTGCCAAGA TGGCCAACGCCCATGACTTCATCTCAAAACTACCCAAGGGTTATGATACGATGGTTGGTGAGCGTGGAGC CCAGCTGTCCGGTGGTCAGAAGCAGAGAGTAGCCATCGCCAGAGCTCTGGTCAGAAACCCACCTATCCTT CTACTGGACGAAGCCACCTCAGCCCTGGACCGAGAGAGTGAGAAGGTCGTACAACAAGCTCTGGATAAGG CTTCGGAAGGTCGCACAACCCTCGTGATTGCTCACCGCTTGACTACCATCAGGAATGCTGACGTCATCTA CGCCTTCGAAGACGGGCGGGTCGTCGAGTTTGGTGATCACGCTGAGCTGATGAAGAGAGACGGGGTCTAC AAGCAGCTTGTGACCCTGCAGACTCTTGATGGTGCTGGTGAGGAATCAACATCAACTTCAAAAGAAGTTG TTCGAAAAGAATCCATCAAACGACTACCATCTCGTCAAATGTCTCGTCAGATCTCACGACAAATGTCCAA CGGCAGTGGCAAAATGGAAGAAAGTGTTGAGGTAAAGGAAGAAGTTGAGGAGGAGGAGGTGGAGGAGAGA GGTTATCTTGAAATCTTGAAGATGAATAAACCGGAGTGGCTTTACATCGTTGTCGGCTGCGTTTTTGCTG GAATCCTTGGAGTCGCCATGCCTGCTTTCGCTATTCTTTTCAGCGAGGTCATCGCGATCTTCAGTTTGCC CGCTGACGAATTGAGAGAGGAATCTGTTTTCTGGGCCCTGATGTTCCTGGCCCTCGGAGGAGCATTCTTT GTGAGTAACAGCGTCACCGGTTACTGCTTTTCGATCTCTGGAGAGGAGTTGACCCTGAGGCTTCGCAAGA AAGCGTTCTGGACCATCCTCCGTCAGGACTGTGCATATTTTGACCAACCAAGTCACAGTACTGGTGCCCT TGCTACAAGGCTATCATCAGACGCATCAAATGTCAAAGGGGCCACCGGAATGCGCATCAGCACCATCGTG CAGGCTATCGTAACCATGGTCGTCGCTATCACCATTGGCTTCGTCTTCGGCTGGAAGTTGGCTCTCCTCA TCTTCGGTTGCCTCCCGGTCCTGGCCCTCTCCGGTGCTCTTGAGATGAAGATCCTCCAGGGTGGGCATGA GAAAGACGCCGCCCTCATCGAGGAAGCCGGCAAGATTGCCGCCGAAGCAATTGAGAACGTTCGTACTGTA GCCTCTCTCAACCTTGAGGATAGGATGATTGCGAATTATACTGAGCAGCTGCAAAACCCCTACAGGCAAG GAAAGATTAACAGCCAGATTAATGGTCTGGCCTTTGCTGTCTCCCAGGCGATGATCTTCTTCATCTATGC AGCATCCTTCCGTCTGGGAGGATACTTGGTATCCATTGGTGATATGACAGTAGATGAGGTCTTCAAAGTT GTCTTTGGGGTTGCTTTTGCCGGCATCTCGGTCGGTCAGTCACTGGCTTTCCTCCCAGACTACGCCAAAG CTCGCCACTCAGCAGATCTTATGCTCCACCTGTTCAGCATCAAGCCGCTCATTGATAATTATTCCACGGA TGGTGCTCAACCGCAAAAGGTGGATGGTAAGATCGAGTACAGTGGTCTCAAGTTCTCCTACCCAACTCGA CCTGACGTCACCGTCTTGAAAGGGCTGAGTCTCACCATCAAACCAGGCCAGACCGTAGCCCTGGTAGGAG AGAGTGGGTGTGGTAAGAGTACTCTGGTGTCACTCCTAGAAAGATTCTATGATCCTGCACAAGGTTCTGT GGCTCTCGATGGGACGCCTGTAAAAGACATCAACATCCAGTGGCTGCGAGCAAACATGGCGATTGTGAGC CAAGAACCAATCCTCTTTGCATGTTCTATCGGAGACAACATCCAATATGGTGTCGAAACGCCAATGGAAC AAGCGGCTATTGAGAATGTCGCCAAGATGGCCAACATTCATGATTTCATCGCTTCTCTTCCTCTTGGATA TGATACTCTTGTAGGAGAGAAAGGAGCCCAGCTGTCCGGTGGTCAGAAGCAGAGAGTAGCCATCGCCAGA GCTATGGCTAGAAATCCTCGTATCCTACTCCTGGATGAAGCTACCTCAGCACTTGATACAGAGAGCGAAA AGGTTGTCCAGGCAGCCCTTGACAATGCCATGCAGGGCCGAACATCCATCGTCATCGCCCACCGTCTCTC CACCATCCAGAACGCTGACACCATTGCTGTAATCAGAGAGGGAGTGGTCGTCGAGAGCGGTAGCCACCAG GAACTTCTCCAAAGCAAGGGACACTACTTTACGTTGACCGGTGGCAAGATTGATGTGGAATCCGAATAGA CGGAGAAAAGCAGAGATTGTCTTTCCGAAACTAATACAGATTCAAACCAGGAGTCTTGAAATGCTGACCA AATACCTCTCAGTAGGTGCTGGTTGCAGAAGTTGTGTTAAATGATCAAATCGTAGAGCCAGATATGGAAC GATTGATTTGGTCAAATTCCAAAAAAACTATTGAATGGCCAAACGTGTAAATCAGGAGCGTTTTTGTATT CTTACTAAAGTTTATAAACATTATCTTGTATATTTATCATTCTAAGAGATAGTGGAATCATAACCATTGT AGCACTGATTGTATTTGTTGTGAGCCTGTCGTTATAGAACACTGAGGTGCCTAAAATAGGTTTTGCTATT CTAATCAACCCCTCGTTGGGGGATCCGCCTGACAAATTTCATACCATTTTATACATTCTCTGACCCTTTT CTCTCGAGTCTTGTCCATCTTTCTTGTCTTGCACATCTTTTGACTTGTTAACAACGGTTACAACAATTGA CGGTTATAACAATTGACTTCTGTTTCGATGTCACAAATGCTTTCGTGAACTTGTACATCTATGCATCGAG ACGAAAATGGAGGATTCTTATGCATAAACAAATAGGATACTGCTTTCTCTTTTCTTTATTCTTTGTACGC TTGCAATCAGGTGAATTTTAGTAAGAGGAACTTCAAAGTTTAAACGGGCCTCTACTTTACTTTCTCTACC TCTTTCTGTGAATGATGTAATGTAACCTAATGCATACCAAAGTATTTTCGAGGTTAGTATCTGGAAATAA CAGTGCCTTATGATATTGTTTATTTCATTTTGTTGCGACTGAACTGTACGTGTGTGTCACCGTAAGTGCA TGACGGGATAAATGGTAAATGATAACTCCCCCACACATGCACTAACACATCAACAATATTTGTTGTCGCA GAAACATTAACTACCGGCTCTTTTGTGATATTTTATTCATGGTATCTTGTAAAGATAAAACTGACAATGA CAACCTCATTATGGAATGGAACAAAAGTCATATTGTGTTTAATGGTAGTTAATGCAGATATCTTTGAGAA GTGTTTTTTAAAGACTGGTGCAACGATGCATTTTTCTCTTCTTAACTTGAGATTACTTTTGCCGAGTTAA ATTGCCTCTACCGTGTGAATCAAAAAAAAGTTTACACCTAGAAAATTGCTAATTATTTGTAAAATCATCT ATGAACAGTAAATTATGATACATCTTATGAAAGAGTGTTTAATCCCAAATCATTTGGTACCATTTTTGTG TGATATTCCACCTGTTCATCCAAGCGTGAACAAATACCACACAAAAATGGTACCAAATGATTTGGGATAA AACACTCGTTCATAAGACACAGTTTAATGTTCATCAATGATTTTTTAAATAATTAGCAATTTTCTAGGTG TAAACTTTTTTTTGACTCACTCTCTATTCCACACGTGTTTACTTAATATTTTTGGGTGTGCATCGTAGCA TAACCTTGTCAATTTGGTACCAAAGTCGGATTTTCCCATTTTTTGTGTATATATATATGATACATGTAGT ACCCATGTAAATATTTAAATTATTCATAGAATTGATGGAATTCAAATCAGCTTTGAGTCGATATGATAAA AAGTGTGTCGCTTTTCCAAATGATGTCATGAAAAATTTGTATAATTTTCACGGCAAAATATGAATAGCTT TTTTTTTCGGGGCTCATGTTGGCAATTTTGGTGGCATTAATCCTATGTTTTTCATTATTAAAAAGAGTTC ATTATTAAGCATGTTATCTTAATCATCAGTTGTATTTTATACTTAATTAAAGATATTATCTTTTACAGAA AGTGTTTATGCATATATGGCACATAATGATCTTTTATTGATAGCGATAGAGATGTATTAATCAATAGTGA AATTGGTGATTTGGTTTCTTCAATACCACCTGTAGCCTTTAGCAAATTATGTTTGCATTTGATAAAAAAT ATATAATAGTTTTGTTTTACTGAACATGTTCACATTTCGATGTAACAGAATGCAGGATACATTTAGTTTT ACGTTCACATCAACATTATCATTTTATCTCTATAATCATATACATTTTATTGTAAGATATACATTTTTGT TATCATGACATTTCCTATATTTGTATAATATATGCAGGGGCATTCCTAGCCCATCTTAAAAAGAAAGTAT CACTTTTCTTTGTTTATCAGCAAGGTGGTGGGGAAAGGTTGTTACCCACAAAATCCCCTCTAATTGCACT AAATCTTGCGTCTCACCATTATATCCCAAGTCTCAAGGATGGCTTAAGGATTCTTGATAAAAAAAAGGGG GAGCGCACGGGTCAGAACATGAATTGACTACCAAAGAAGAAATGGTTATCAGATTTGTAGGATCGAAGTT TAAGAGCCCTCTGGGGCAAAAAAATGATGGCAGGGAGGCGCATTTCTCATTTAAGAAATTTTGGTACGCC TCCTACTGTTCTTCACGCCGTAACAAGACAGAAACCCGCCCTCTGCTTCCCCTAACGATAATCCTGCACC TCTCCTGACCTTTTAAATGTGTGTTTCATATTCCAGTCTTTTGCTTTCATGCAATAAGTAGTCACCTATT ATTGTATTCATCACCCCATAGTAAAATGAAGTATTCATATATATATATATATTTTGTTTACCTGTTGTAG ATCACATTTTATGTGAACAGTCGATAGTACCGGTCAAATAAAGTATACTACTTTTAACACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds