Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT122049.1 TSA: Strongylocentrotus purpuratus WHL22.235157.1 mRNA sequence GTTTGATATGTGCACATAAAAGACAGATTAGATTAACAATGCACATTATCTTGAAACAAGTGATAAAGTT AAATCAAGATCAGGAAATGATGATGTTAAGTTCTCGCACAAAATCTGTTATCAATGTACCCCTCTGTCTC TTCGCAGGTGAAGTAGGAGAGCAGAACCCTCAGAGAGCAGCCACCGATGGACCGACAGTGACCTACTGCG TTGGGGACAAGGTCAAGGTCATTCTCACTGTAGATGTCCTGAAGGCCATGCAGGAGGGCCATGGGGGCTG GAACCCCAAAATGGCAGAGTATGTTGGGAAGATTGGTCTTGTGCATCGTGTGACTGACCGAGGAGATATC CGAGTCACCTACCCGGGCTGTGGTACAAGATGGACATACCATACTGCTGCCCTGAGCAAGGTGAATTCGT ATGCAACAGGGGATGAAGTGACCATTCTATCTGACATGGCGTTGGTCAAAAGATTGCAGTCTGGCCACGG AGAATGGAGTGAGGGCATGGCCACAACTCTTGGCAAGAAAGGGAAAATCCTCAAGATTTACTCTGACGGT GACCTCCGTGTGTCGGTAGACAAGCAAGTGTGGACGTTCAACCCCGCTTGTTTGACCCCCATTGAGAGGT CAAGCAAGCCTGACCTCAATAACACCATGACCGCTGACAGAGCTGAGGAACTCCAGGGTAATCTTCACGA GCTGTTGCAGGAGATCTTAACCCTTCGAACGCCCAATGAGAGTCCGGATAAGCTGGTGAGCGAAGCCGCC CAGGGGAACACAAGAACAGTCACAGAGCTGATATCCAAGCACCCTGACTGGGTGAATGCAAGGGTGTCTG GTAAGACCGCTCTACAGGTAGCCAGTCACCAGGGTCATCTAGAGGTCATCAAGGTGCTCAGTCTGGGCAA AGTCACGATGGAGCTCCAAGACCAGGATGGTGATACTGCTCTTCACTACGCTGTCTTCGGCAAACAACCA GACATTGTGGAGTACCTGATCAGCAAGAATGCCGACATGAACGTCGTCAACAAGGGTAGCTGTAGTAGTC TGCATGTGGCAGTCAACAAAGGCTTTGTGGATTGCGTCCGGGTGCTTCTGAGGCACAGATGTAATGCTAA TTTACAGGACCTGTATGGTGACACTGCGCTCCACGATGCCATCGCAAAGGACAACCGTGACATCATCGAT CTTCTCGTTGAGGCCCATGGAGCTGACCTGAGCCTCAAGAACAGGAGAGGGTTCAACGTGCTTCATCACG CTGCCCTCAAGGGCAACAAATATGCCACTGAGAAATTGGTAACCAAGGCACGACAGCTTGTGAACCTCAA GAAAGACGACGGTTATGCAGCTCTTCATCTAGCAGCTCTAAATGGCCATAGAGATGTTGCAGAGACACTG CTAGTACAGGGACACGGTGACCTGAACGTGCGCAACAACCGCCGTCAGACTCCCCTGATCCTGGCAGCAG GACAGGGCCACACCCATGTCATCGAGCTCATGGTTACCAAGGGAGCAGAGGTATCGGCAGAGGATGAGGA TGGTGACACCAGTCTCCATCTCGCTTTGGTCAGGCAAGAAGTGTATGCTGAAAGAGATGACTCACCTATC ATCCAGCAGTACCGAACAAAGATAGTGAGTGGTTTGGTGGTGAACATGGCGATAGCCTCGGTCTGTTTCT TGGTCCAGGCTGGGGGTAGTCTAACTCACAGGAACCATCAGAGCAAGTCCCCGTTAGACCTGGTCCTAGA CATCAAGATCAAGAACTACCTGCTTCAGCTGTATGAGCAAAGAAGACAAAAACAGAGGCAGGATAAAGAT GCCAAGCACGGCAGAAGACGTAGGAGTCCAAGTCAAGAGCGACTTCTGGCTAGTAGCAGAGGAGATACAC CTGGCACGTCCACCAGTCAGAATGTCAACCCAATGTCTTCTGGTGCCTCACCCCCGCCGTCAGGCACCTC CCAGAATGTCCGAGGCCCCTCCACACCCGCTGGACCCCCCGCACCCGCAGGGCCCTCAACCCCCGCAGGA CCCCCTGCATCATCGGTGGAGGGTCCCTCCGGGGATTCCCCTGCCAATCTTGAGGCGATGATGTCAGACT GCAGGATGTGCCAGAAGCCTGCCAACTGTCAGTTCAAACCCTGCGGTCATCAGGTGGCGTGTATGGACTG TGCAGTGCTCTTCCAGAAGTGCTTTTCTTGCAAGGCTGAGGTGAAGGATAGAGTGAGAGTAGAGGAGAAG AAATGTGCAATCTGTTCAACAAACAAGGCTGAAGTCACGTTCTCACCCTGTGGCCATAAGAATGTATGCA GAGGATGCTGTAATAAAGAAAAATCTTGCAGGGCCTGTCAACAACCAGTCAGAGAAATGTTAGACAAAGG AGCTAAGGCTGCCCAAGCTCCGTCATCATCAGGCTCCTTAACTCCCAGAGGGGCGTCGTCATCATCGAGT CGGGTCTCTAAGGAGGAGGAGCTTAAAAAACTCAAGGAGCAATACCAGCAGATGGAGGAGGAGGTGCTAT GTCCGATCTGCATGGAGAACAAACGCAATGTGGTCTTCCTCTGCGGCCACAGCGTGTGTAAGAAGTGCTC CAGACCGCTCAAGCAATGTCCTCTCTGTCGAAAGCCTATCACCAAAAAGATCGCTCTCTTTACTTAGCAC ACTCTTGGTACATTCTGTCTTATAAAAGGTAAAGACTGTTATAAATATTGAATGCATATGGCCATTTTTG ATATGCTTGTGTGGACAAACCATCTGCTTTTAAAGTACTCGAGACCTGTCCAGAACGGTTCACTTGAAAG ACCATCACTGATAGGATGAGTTGTTGTGTCCAATCTGCATGGAGAACAAACGCAATGTGGTCTTCCTTTG CGGCCACAGTGTGTGTAAGAAGTGCTCCAGACCACTCAAGCCAAGTCCTCTCTGTCAAAAGGCCAAGTAA CTATATGATATTCTTGTGTGGTCAAAGCATGGAAGGGCCATCTCAAATGTTGCCAGTTCTGTTGAAAGCC ATTCACCAGATACTGCTCTCCTTCAAAAATTGCAAATACAGCATGTATATATTCAAGGTATCTGTTATAA ATGCCAGCACCATTGTAATGACGACACACTTGCTGCTTTAGGAGGATCAGTCCGATCCCATTTTTCTAAG GCCGAGGTGTCTGCAGAGGGTTGTGGTCCTGAAATAGAGTGTAGTTCTTTTGAAAAACTTGTCGCCAAGG AAAGCACTGCCTTAGAATCCAATGAGATTAATAGGTGAAGACAGTAGTGATGATGAAGGGTATTCTGCTA GTTTGTAATAGCTATAACAGTTGAGAAATAGAGGGCAGCATAAGTCAATTGTAACCACAGCAGGTAATAA TTTCTCATTGTGAAAAAAGAACTTTTTCTCAGTTGAATTATCAATGAAGCTCTGCAGTGGCTACTACGTG TGATCTAGATCTCCTCTAGCTCTGCTTATTCTTTTGCAAGCCTGTTGCCAACAAATTTCAATGTAAAATC TTGAAGATGTCGGTAACCACACTGCCACAAGCCACCTGTGAGCAAGATAGGTATGCTCCTTTGTATTTAT TTAAAATTACACATAGTTGTAGGCTGGTACATGTACAATAAGATGATCGGTAGTATAGGTTGTAACTGAA ACTTTTACCAATTGCTTACTCTTTCTGATTTGGATCCACAATTTTGTCAAGGTTTGTGAACATTACTCAG GAAGTCTGTGTCAAATCTCTCTGCAATCTATCATTATGAAATAGCTAAGAAATAGAACCAAACAAAATGA GGATCAGGTTTATGTAAAGATTCAAGTTTTAACTTTCTTTCTGAACTTAAGTACTCTTTTATATTGAAAT AGCTCGTAACTTGTACATATATAAAGTTCCTATCTTACCACATTAATTGCTTATACCGCGTCGACTGTTT TAGAGTGACAAATGAGATCATTGGTACTACGAATATTGATGAATCGCAGTGAAGAAGGCCACATAGTATA AATCGTAAGAATGAACAGTAAGCCCAAATTAGTTTCTTCTTTGTGTATTTTTGATTATACATTCAATGTT TTCTTATGCTGTTAGTCACAAAGCATAGAATTTTAACCTTTATGCTGTATGAGCAATTTATGTTTCGCCT ACTCCACTTGTTTCATATTCAGTTGAACATTATGCAAATATTTTTACCTGTGTTTTCATTTTTGATTATC CAGAACAAAGCATGAAATTCACCTCAAAAAAATAATCAATTAATTCAACTTATATGATGAGGCATTACTT ATGTTCAGGATAGCAATGATGTATTCACTCATTCAAACATAATACACCATAGTCCAATCTCTTTATTTTA GTACTAGTGTGTGGACATATTCAAATAGCATTTTGACAGGGCTTTAAATTATTGTATCACAAGTAGGCAA GGGTTCGTGAAGGCCACAATTTTTTTCTTTTAAAGCCCCTCTGCACTAGTTAGGCACCTGCAAGGTCACT GGCAGGTGGTTATCTCATCAAATCAGCTCTCAAATAATATAAGAAAAAGGGCATCATGAGGAATCAACAA GTATCGCTTAGGCATTGTTGGCTGTATAGAGGGCGCAAGTAGTGCAGTGGGGCTTTAAATGTGTGTGCTT CGTGTATGACATTGTGAATAGATACAGGGGTATACCATACAAAACAAACTAAATGATTACTGATGGTTGC TTCAGGTATCATACCTCACATATTCTTAGTAAGAAACTTTTAATATTTCATGGTAGCTTTGTTTGATATC ATCTCGATTATGCCTTTGACAAAGCAGGGGTTTTTATAAAAAAAAATAATGAAAAAAAAAAATACAAATA TTTTCCTGTGGGGAGAAGTGCACTTGCTATACAATACTTTAAATGATTGATATATTATTTTGAATTGTGT GATATTGTCTGTAGATGGCCAAATGGGCATTAACTCTATATAGATGTTAAAGAAAGTGAGTAAACGTCAT TCTGGCTCATAGCAGATTATATCACTGCTGTTTTGATTAAAGTGCTTTAAAATCCTTTTTTGTTTAATCT CCATAGGAATTTGACAGAAATAAAAGTACATACCGGTAATCTTTTTATCTCTCTCCGTGTATTTACAAAT TCTACTTTCTTTCATTCATATTTCATTGCATGACATTCCATTTTCAATCTAAGTTATTTTTTGATATCAT GGAATGTCAGTGTATGATTTTATGTTCTGTCAGTGTTTAAATCGAGAGTGAGATACGTTGTATCAGATTT CAAGCACTGCAGCTACGTTTTTCAAGAGAACTATTTCTGTAATTTGGATGAATGATTTACATTAATTATT TGATTGACTATTTTGCAGGAAAAAAAGCTACACCAAAATGCTACTACTGCTATCACTACTAGTCTCATCT CCAGTTTATAATTACATCCTAATTTCAATCTTTAGTATACTGTATAGATATTCTGGTTTTGTTAGACAAA GCATTGCATTGCTATTCCTCACTTTTATCAGGATTTAACAAATCTTATCAGTGAATTAAAATAAAGCAAT AGAACCTTGTTCTACATTACTCGTTCTGGATTTCTGCTACCGGTCATATATTAGTATACCTAGTGTTTTG AAGGATTGAAAGCATGTAGATTTTCGCAGAGCTCCACACCAGGGGGGGGGGGGGGGGGTTCACAAAATGT TCATCAGTGACAAATGACAGTTTTTTGTTATAAGCCACTGAAATCCTTGCTTCTGATTGGTTGTCAACAG ATTTGTCACTGACTTTAGTCATTAGTCATTGTAAAAGGGCTTTGTGAAACGGGTCCTTTACTCTATAGGG GATGTGTTCATGAGGCCCCTGGTTTAGTTGTTTTAATGTTGTGGTTCTGGAGTTCAAATCATAGGACCTC AGTCTATTTATGTTTGTTCTATATTCAAATGTCGAATGTTTTGACAATATAGATGAATTAATACAAAATG TGCTCCAGGACAGTGTTGAGCCTGGCTGTGTATTAAAACTTGAAAACATGAGTATGTGTAGCAGCAGAGG GCATTATATTGCATTGATGTTTTCATGCGTGGTATATACCGGTACTAAGATATATATGCACCGGCTATTC CCAGCTCTGTGATGCTGATATGTATGCTATAATTTGAAATGAAAAATGTTGCAAAAACTATCATTATTGA AAACAGAAACGTTTTATGATTATAAGGAGATTTTATGGAGATGTTACTTTATTTGCTTAAATTTAATATT GCATTGTAAATATTTTTCATATTGTGTCAAAACTATGTCTTAAACTATGTTTTTTGTCTATATGTTGTTT GATTGAATTGTGATTCTGATAAATGATTTTTATTATTCATTCATCGTTGTGAGGAAAGCCGGTACACAGT AGCATGTTTGAATTTTAGTAATAAATTGTTTGTTTCTAACTTTCCACTAATTAATTTTGATGATATGAAA ATCAGGATGTAGTTCCATTTCATTTATCTGTACGTTTGAGAGAGAAAAAAAAAGATTCCCCAACTTGGAA TTACTGATAGCCATGTGAGGTACATGGATATGTGACATACCATGACCCATAGCGTATATAGAGATGTAGT TGTGACATGCATACGCAAGCATGCTCAGAGGTCAATTTATGCAGCTTGAAATACAACTGTATGGCAGGGG ACAAGGTCATGAATTTGACCTGAGAACAAGTATTACTTCTGGTGACCCAGCTTTCTCTGCTCTACTCGCT ATGGTGTAAACTAGTGCATTGTCAAGGGAATGTAGTCTAAGGGTTTAATTAGGATGGCCAATTTGTGACA TGAATGTTGGGAGTTCAGAATCATGAGTTATTGTTTAGGTTTCTATAGTCTTTGTGTGTGAATGTTAAAC CGCGGTGGGTATGAAAATTGATCTGATTCACAGTACATAACACAAGCAGCACATGTATAGTTTTATATCA AGTAAAGGTACAGTCAAACCTGCTTTAGTGACCACCTGTCTACAAAGACCACTTTTTTTGTTTCCCTTGA AAATGGTTTCTCATTGAAACGTGTACTAAAGAAACCTGTCTACAAAGACCATGTTTTGTGTTTCCGTTGG GCAGTCGCTATAGACAGGTTTGACTGTATTACCTAATTAACAGAGGATACTGGTACTTTCATGTAGAAAA AAGAAATGAAAAACGAGTTTTAGATATAGTAATATGTGATTGCACAAAATTGTGAATTGTTTTTAAATGT GAAATGGAAGGAATTGATAGGATTATTATGCTGATGTTTATGTGAGTTTGGATAATCTGTTTTTGCAAGA GCACAATCGATTGGCTTTGTATCATTCATAGCATATGTCATTTGCTGGAACCAATCACAAGTGAAGTACC TCGTTTTATTTATTTTGATTATTTGTAAGACAACAATTTTGGGGGAAAAACAGAATGGTGATGATATATC GCGAAGATAAGAGCCCTCGTGGCTGTAAAGGAGGTCCATACGAGATTTAATGTACTTCCGGTGTAATGTA AATGGAAATTAAAATACGATTTATTTTTTTTAACCAATGTAACAATACATGATAGCAATAGGCCATTTTC GTAATGTAATCGATTTTAATGCATACCGGTAAATCTTTGTTAAGTGCTTCAAATTTGTTTATTCACTTGT ATATCAATAGAATGCCAATAGCATATATAACGTGTTGTTTGGTAGGTCGAGCCATATTGTTGATCCTACC TAGCAACAACTAATGTATGCAATTTCCATTCTGACTTTTGAAATACATGAATTTGTAATGGTGAATGAAA TCAAATTTGTAATGATGCACTTCACAAAGATTTATGCATTGACTTTGATTACATTACGAAAATGGCCTGT TATTCATTATGGGAGGGAAGGTTAAGAATGGCCAGGCGGCAAAACTGTACCAACATTGCATCCCCCATAA AAATGAAAAACAAAAACGTTGGCCCTTCTATCTGTAAGCAAATGATGTCTAAATTACTGTATTGTTTTTA GCTTTTAATAGGAAAGGAAGTAGTATTGAAAGACAGGTGCATAATATTTGTCTTCCTTTGATTTCAATCA CAACTTATTTTTATTTTTTTTTAAATAAATTTAATGAAGGTCTGTGCAGAGTACAGACGAGGAGAAAACT CAGTTTTTATTTGCTATATTTGTTTTGAAGACAATGTTAATGCTGCAAGCGTGCTTTATTTGTCAGCTAT GTAGAAATATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds