Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030987641.1 PREDICTED: Strongylocentrotus purpuratus E3 ubiquitin-protein ligase MIB2 (LOC590614), mRNA AGGCCTAGCTATGTCTGAAATAAAGTTAAAGTTATGCTCGATCTGTGTTTTTTATTTAGACTTTCCCTCC TTTTTTATGGACTAATGAATGGGTATATAGATCTAGAATAATTTACCAATTTAATTTGTGACATCCTAGA TTGATTAAATAATTCACAAAGTCATGACTTTTTATATTTCATATGTCTCCTAGATCCCCTAATTTTTCTT TAAACAATTCCAAATTTTCTTGCATCTTTTATATCCTAGGAGCGTTAACCCAAGGCTGATCTATTTGTGG TGGAGAATATGTCACGAGTTGTTGGAACACGTGTGATCCGGGGACCAGATTGGAGATGGGGCGATCAAGA CGGAGGAGAGAACCATCTTGGCACCATCACAGACATCATCCCAAACGACCCTGACAATGATAACGGTGAT GAGGCACCAAGGGCAGTTAAGGTCATGTGGGACGTTGGCAAGAAAGCCAACTACCGGGTCGGGTTCGAGC AGATGTATGACCTCCGGATGTATGATAATTCACCCATGGGTGTACTCCACAAGTTTGTTCGTTGCATTGG ATGTGCTTCAGATAACATTGCAGGAATCCGTTGGAGATGTACTCTATGCATACACTGCAACCTCTGCACC GAGTGCTACATGTCTGGCTCTCATGATACAGAGCATGAGTTTCTACGCATAGATGGACCTCAAGATCCTG GGGTTGTGGTCAAAGCAAGAAAAGAGAGCAAGAGTGTGACCTCTCATGGTATATTTGTTGGTGCCAAAGT CTGTAGGAGACCAGATGGGACTTCAGGCAATCAAGACGGTGGGCGAAAGAGTGTAGGCACAGTGACTGAT GTCTGTGATTGGTCAGAATGTTTCAAGAAGGGTGCTGCCATCGTCCAATGGAAGGAAGGTGCTTCGGTCA AATATCGAGTGGGACATGATGGGAAGGTTGAGCTCAAAGCTGTTGAGACTGCGGCTGGACTGGACTTCTA TCAAGATCATCTTCCACTAATAGGAGAAACAGAGACATGGAAGAAGGGAGGAAAGGTGATGATTGCCATG GATACAGAGATGCTCAACATTTTTCAAGAGGAAACGGGAGCGAATTGGGATAACAGTCTTATAGAGAAAA TTGGAAGATCTGGTAGCGTAGAGGTCGTCGACCACAGGGGTTGGGTTCAAGTGATGTACGATGACAAGAC CAAATGGACAATGCCGCCTTTCGCCCTGAAGAAGGTGGTGGACTTTAAAGCCGGAGATCGAGTCCGAATC AGTGCAAACATTGACATGGTCAAAGATTTACATCGCAAAAATGAGGAGAGAAATGATGCCATTGAATTGA GCAAAAAGGCAGGGCAGGAAGGTAGAGTCCTGGAGAGTACAGATGGCCGTGGCAGTGTGAAAGTAAAGGT CAAAGGTCAAACTCTAAAGTACCATCCCGCTGCCCTGATACTGCTTCCAAAACGAGATGGAGATGATGAA GAGGAAGACGAAGAGGAGGAGGAGAAGGTGGAGGAGAAGGTGGAGGATAAGAAGGAGGAGGAGGAGGAGA AGGTGGAGGTTAAGAAGGACAAGGAGGAGAAGGAAGATGGGGAGAAGAGGCATGATGATAAAAAGAAGAA AAGTGATGAAGAATATGAAAACATCATCACAAATGCTCCGCAGGTCGGATCCAAACCAGTGCCAATTCCT GTACCTGCCGGTCCAGCTGACAAAGATGTTATGCATCGCTTGGTGGAGAAGATGACTGAGCAGCTGAAAG ATGCCGGAGTATCAGAATTAGGTACTACCTCCGAAGAAAAGCAGATGGTCAAAGCTGTTGCAGCTGGAAA TCTAGAGAAGGTCAAGGACCTTCTTAGGCAGAATCCTAAACTGGCGAATGCAAGCCACAGCTCACGATCT GCTCTTCAGGTGGCATGCCACGAGGGATCCTTACCAATTGTACAACTCTTGGTAGATGCTCATGCTTCCC TTGAACATAAAGATGGAGACGGGGACACAGCTCTCACCTTCGCGGTCATCGGCAACAATCCATCAGTTGC AGAGTTTTTGATGGAGCGGAAGGCCTACGTGAATACATCCAACAAACGTAGACGGACTCCTATGCATATC AGTGCACACAAAGATCATAAATCATGTGTAGAGGCGCTTATCAAACATGGCGGCAGTGTCAATATGCAGG ACAATGATGGTAATCTCCCTATCCACCTGGCAATCAAACAGAAGTCGACGTCCCTGGGGGCGCTCTTCAT TGACCATCCATCTGCTGATCTGAGACTAAGAAATAATGATGCCTTTCCTCCTCTTCATTATGCTGCTAAA AGGAACTGCCTTGAGATGGTGAAGTTGTTGGTTGCTAAGGACCCATCTCTTGCTACCATTGAGAAGGATG ATCGCTATACACCTCTTCATGTTGCAGCTATTAACAATCATATCGATATTGTGCGTGTTCTGATTGAACT GCCCAACTGTGACCTTACAACTATCAATGCCGGTCACGGTCACTCCACACCCCTCCACCTGGCCACCTGG CAGGGCTACACAGAGGTCATTGAACTTCTGGTCAGTCACAGAGCAGAGGTCAATGTCAAGGACAAGGATG GAGACACCATGTTGCATTTGACCGTCAAGAGGCGGGTGAGCGGCAAGAAATTCGTCCATGACACTCCAAC ATTACAAAAGGTGTGTAAGGAGATAGGCGATCCAGCTATCACTACGCCCAGAGACGCCATCATCGCATAC TTCATACGTCACGGCAGTGATGTCACAATCAAGAATAACAATGGCCACACCCCTTTCAATTTGTTGGAGA ATGAACCGGTTCTATTGAATGCTTTGATGAGAGTAGCCGGAATCACTCCAATCAATGAAATACCAATAGC AGCTGATGAAGCCGTAGACAAGACGAGGAAGGAGGAGAAAAAGAAGGATAAGGAAGAAAGGAGTCCCTCT GCTGAGAAAGCCCCCAAACCAGAAAAGAAACAAGCTGATTTTGAGGGAGTGCACCGTATCAGCCCAGAGG AGCTGAAGTTAGGGAAAACGATCGGGCAGGGCGGCTTCGGGGAGGTGAAGAAAGCTATCTGGAGAGGTAC CTGCGTGGCTGTCAAGATTATTTCCACGGCTGGTAGCAAGGAAGATGAGGTGGAGAAAGAGGTCTCTATT CATAAGCGTGCTAGACATCCGAACATAGTCTCTTTGATGGCTGTTGGGCATCGAATTGGACAGGTCCTGA TCGTCATGGAGTTTATCGATGGAATGGATCTCCATGATGTCATCTTCCGGAAAAAGAAGGATGCTATTAT CCTGACTCCGGAGTTGAAGATGAGCATCACGGTTGGTCTCTTGTCAGCTCTCACCTTCCTTCATGCTTCC AAGATACTCCATCTAGACATCAAACCATCCAACGTTATGGTTGAACGTGCATCAAGGAGGGCATACCTCT GTGACCTTGGCCTTGCCCACATCAAGACCCGTAGTTCCATGTCTCTCTCAACATCAATGGGTGGACCACG TGGCACCATCACCCACATGCCCCCAGAGATGGTCCAAAGAGAAGGGAAGGCCTGGGCTGGTCCAGGAAAC GACATCTGGTCGATTGCTTGCACCTTCCTGGAGTTGTTCGTGGAGCAACGCCTCTGGGAAGGTGCAGAAT TCATGGCGTTGCTTAGAACGTTGCTGAAACCAGCTTCCGTGCCGCCGATTCTGAAGAAGGTTAAGACAGA GGTGCGTACCATACTCAAACCGTGCTTTGATAAGGAGCCCTTGAAAAGGCCCTCTGCAGAGGTACTCCTT GAGCAATTCCAGAAGCTCCAACAGTCCAGCCCATGATGTGTCAGGCATCCTTTTCACTTGCATGCTAATT AAGGTATCAGTTCCAGAAGCTCTAACAGTCCAGCTCATGATGTGTGAGGCATCCCTCTTCAATTGCAGGC TGGGTATTACTTGAACAGCTTCAGAAGCTTTAAAAGTCCAGCTTGTGATGTGGTAGGCACCCCTCCTCAC ATTCTTGCTAGAGACTCCAGAATATATTTTGCTGGTGAATTGAAATAATGAACAGGCACTGGTGAAATAA TGTTAAAATCTGTGCAATATTGTATTTCTCCTATGAGCATTGATGCACCATTTCAAATTCAGATTCATGT ACCTAAGGGGTCTAATAATTGAGCTTGAAATATGTTACAGTGACTCGGTAACATTGTTGAAGGTTGATGA AAAAACTATTTTTTGTGTATGAAATGTTACATTATCTTCCTTTTACTGTACTAACCGTCTAACATGCAAA AAGATCTTCTAATTCTCTAACCACAAATATATATGGTTTTCTTTGAAGGCATCCGTGTGCAACACCCTCT AACAGTAAATTCTAATTCTCCCAACCATTTTTGAATTTTCTCAACCGTTTTGCCATGAAAATAAGACATG GAACAGGCAAAACTTTCAACACTTAAATGTCTGGAATGGTATATAGAGCCAATTCATTGCTTTGTGGTGA TTTAAATTCACCTTAAACGTAATTAAATTGTAATAATGTATTTGGGAGAATTAAGGAATTGATCAGATCA GTTTTTCCCAATTTGTATCATTAATAATGGTTTGTTTCCACTCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds