Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT118927.1 TSA: Strongylocentrotus purpuratus WHL22.629001.3 mRNA sequence GGAGAATTGTTTTATTTTCGCACCAAATTTGAGTCATTATTTGGGTGACTATAGTGTCCGCTTACACACT GCTGTAAAAATTGGCAGCCTCCGACTTGTATCCTGGAAGCGGCCTCGCTTTAGTCCAGCCGGTAAGTTTA TGATTCTTCGCTACACACATGATCGAACTACTTCCATTGAGTTAGTACACATTCAACCGTACACCCCAAC ATAACACACAAAGTCTCGGCACACCAGTCTTTCTTTTATTGGTGTACGGTTCTTCCACTTGTGACCCCGT CCGTAACGCGAAGTACCACGGCGAAATATTCATGAACTTGCCCTAAAGGAGTCACGGCTTACGACCTACC GTTGAAGGATTCGAATCGAATGGACGGGCGTGTTCTCAAAGACTGTTTTGTTGAACTACCAGCCGTTCGT TCCTCAACTTGACTGTTCCTTTGGTTTGTGAAAAACGACCCATAGGAATTGCTGAGCTGCGTATCTGCAG CTGTCACTTCTCAGGTGGAGAGAAGAAAGAGGGGGACGTCCCCGTACCTGACCCAGAGGTGGATGAACCT ATCAATATTGACATCAGTGCCGCAACAAACAACAGCAACAGTAATCATAGCTCGCCTTCGCGTTGCCTTA TGGATAAACAGAAGCGGGCCGCCAAGCGCCAAAGAATGTCCGTAGAGAGGATCGTTGAAGGAATCCGTCA CCCTGCTACCACCGCTGCCTCCATGCCTGCAGCCACCCCTGTGCAAGGTCGTCCGTTGGTGGCGCTGTTA GATGGACGGGACTGTAGCGTTGAGATGCCCATCCTCAAGGATGTGGCCACGGTGGCATTCTGTGATGCAC AGTCTACCACAGAGATACATGAAAAGGTGCTAAATGAAGCAGTAGGAGCCCTGCTCTACCACACAATCAC ATTGACAAGAGAAGATCTTGAGAAGTTTAAAGCTCTCCGTATCATCGTCAGAATCGGATCTGGATTCGAC AATGTGGACATCAAAGCTGCAGGAGAAATGGGTGTAGCAGTGTGTAATGTCCCTGGGTATGGTGTAGAGG AGGCAGCAGACTCCACACTGTGTATGATCTTGAATCTGTATAGACGAACTCATTGGATGGCTGAGATGGT CAAACAGGGCAAGAAGCTTTCAGGTGCTGAACAGATCAGGGAAGCCGGTGCAGGAGCTACAAGAATTCGC AACGAGACTCTCGGGATTATAGGAATGGGTCGTGTTGGTACAGCAGTAGCTATGAGAGCAAAAGCCTTTG GATTCAACCTACTTTTCTATGACCCCTACTTGCAAGATGGCATGGAGAAAGCATTTGGATTAACCAGAGT CTACACACTACAGGATCTGTTATTCCAGAGTGACTGCGTGACACTTCATTGTTCTCTCAACGAGCACAAT CATCATCTAATAAACGAGTTCACCATCAAACAGATGCGTCAAGGAGCTTTCCTGGTCAATACATCACGCG GCGGTCTCATCGATGAGAATGCCCTCGCTCAAGCACTCAAAGAAGGTCGCATCCGAGCCGCGGCGCTTGA CGTCCATGAAACGGAGCCGTTTACATTTACCTCAGGTCCTCTCAAGGATGCTCCTAATCTGATCTGCACT CCACATTGCTCTTGGTATAGTGAGCAGAGTAGCACAGAGGTACGTGAGAGTGCAGCCGGTGAGATCAGAC GGGCTATCACAGGACGCGTTCCTGGTAACCTACGCAATTGTGTTAATAAAGAATACATGATTTCATCCTC GTCTGGCGGCCAATCATGGTCAGAGCCTAATAATCCATCTGAACTTAATGGATCAGTGTATCGCTATGCA GCACCTCCCGTTGTCGTACCTCAACCAGCTCCTCAGCTTGTCGCTGAAAACCACTCCATGCCAATGCCAA TGAATGTAGTGTCCACACCTGTGGTCAGTAGCGGTCATTCGGACACTAAGGCAGAACCTGAACAATGAGA ACCATCATGAGAGAGAGTGTGGCAATCGGACCCTTCCAGTCAGTCATCATGCCTCAGTAAATCAGAGAGG CATTTATGTGGTCTTACCAAGTAACCAAAAGAACTTGTGGATTTGTCTTGTATTCTGTGCCAAGGCAGTA TTTACAATTTTATGGAAAGAAAATAAGATCCTTGTAGAAAAAAAAAACGTAGAAACAAGTAGGCCCAACA CACGCACTCCGTAGAGCAACTCATTAGAAATAAAAAATTGAAATGAAACAAACTTTCTACCTACCACCGA AACAATGAATTGCATAGAGATACTGCTGTATAAATATTAGCTGAGCAGTATGTAGAAATCTTGTCTTGTT TTGTCAGAGTGATATGTGTGCACACAAACCAACCCCCAGTTCACCTATTTGTAATGTATGTGCATGTTTA GTGGAATTTGTGCCCAAAAGTTATATATCTTCAAGAGGAATAACAGAATTTATGAAAGCAAATATATATA TCAGTGAAATCTGGAGACTGGAATAATACACTGAAAGCTAGTACGGTAATCAGAGAAAGAGAGACGACAA TGGATGATATTTGTACAAAGGAAAGTGGATTTGTCATTTTGTACTTGGCTTGCTGACATTATGCAAAGGA CAGCAACACATGTACAAGGCATCAATTTTTTTTAATTTGAAATCTCCTACATTTTGAGCTTTTCTTTCAA CGTTCGCTTGTGTCTTCACATTGGTTTGTTTCATCTTTGAGTTTGGAAATGCTGACTAACGGAGAACAGA AGACATCACGCTTCAATCGTCTGCGTGTACATCTTTATTCTATGATTTAATATGATGGTTGTTTCAATAA TGTTCCTTTCTGTAATTTTGTTCATGCGCATTAATTAAGCTTCATGCGGATATCATTTTGATGACTTTGT ACAATGTTGGCTGCATTTCTCACACAAACTGCAGCAAAAAATTAGTAGTTGTAGAAATCATTTATCTGGA AGCCTATGGATCACATATTGTTTGTATGATTTTGTAAGGCTGCGTGTTGAGTTTTGTATTTTATAACAAG AAGAATGTTGAAATACTGGAGTGCTTGGTACTGGCACCTGGCTTCGTGATGTAATGTTTGATGTACTTAA TGCAAATGATGGTTGAAGCTTGCTGCTCTAGTAAGAAATGATTCATATCCTTGTCTTCTTCATTTGATAC ACTGGTTTGGTGTTTTCCTTTAACATTTCATCTTCCATCCCCTTTCATATAATCAGATTAACCTCTGGAC ATCTAAACGTTTCTTTAATGGTAGGAATGATAAACGAATTGTAAACTGATACATCGTACAACTCATTGAT TAATTACCAGTTATTAGAAAGTCTGATATAGAAAAAGTTTTTGCCTTTTTTGTCATTAGGTGTAAACAAT TGGAGCACCAATTTCAAAAGGATGTATGACTTTATGTATCAAATATTGGCTCGGTCCTTAATCTCTGTAG GCAGACTTCATTTTGTTTCCTCCTATTCTGTTCTCTCTTCTATTCCTTTCTTGTCTGTTTCATATATTCA TGTTCCAGAAGTTCTAATAGACATACAGGTTATTAATAGGAAACTGAGTAAACTAGAAAGTTCAATGATT ATTCATTTTCACAGAACAAAACATGTATGATGTCCAGAGGTCATGTGACCAAAAGAAATGTCACATGACC AAGTTGAATTGTGGAGACCTTGGATTGTATCTCTTGCCATTACTAGAAAGCAATTGGTTGGATAAAAAGA ACACCATTCACATTTGCATGAATATTGCCATCTGCAATTGTATCATGTATATCATAATCATTGCACTGCC ACTACTTGGTTTTTAGAATATCGGTTGATCTATGTTACAGTTTATTTTTGTTTTAATTATCTTTATTATT ATTTGTGTGTTTGTAAGCTTTTAAGGTTGATGGTTCCATGATACCAAATCCTAATGAGTTATGTTACAGC TCTATTGTAACATGAATTGTAAAATCATACTATTGATACATGTACAGGGGAAACAAGTAAAACAAGATCC ATTAGAATTTGTGTTCAATCTTGGATAAAATCTTAGAAGATAGATACTCATAGATTGTTCTGAAAAAAAT GCTGGTTTTTTAAACTTCTTCATATTGTTTTAGCTCATTTTTGTGAGAACGGATTGAATGGCCTGAATAT AAAGAGAAAGCTTGAAAACTATAATATTAATCAGATTGAATCGGAACGTACTGTTAAGATTCTACCAACA GAAGATCCAAATTATGATATTGATTGCTGCAATCAATAGATCCTGAAATTCTTTTTCATGAGAAGTTCAT GTGGTTTGCAGTCATAAATTTGGTTGGACTGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGAGGGG GTTGTGATCGGTATGTGACATGCATCATGTGTATGATACAAAGCAAACATAGAATGTAGCTTTCTGAATG AGTGATCTCTCACTATCAAGGTCAATGACCTCAATCTAGAAGGGTGAATGAACTTTTCATAGGGTCGGTC TGAATGTAGGTCACTAATATTGTTTTGAGTATGTGTAAACATGGGTTGGAGTTTAATGTTGTAATCTTAA TATTGTAAACAAGCTTTGTGACCGAAAGAATGTTATTTCAGAGCTTGTGATCTTCTCCTCTTCTTCTTTC ATACGAGGTATCAAAAGAGCAAATCCATCTATTTGTTAAGCTCTCTTGTTGTTGTTCACCTAATAGAAGT CAGTTAACAGGGGTAACCATGTGGAGGATCGCAAACTTGAACCCTGTTTACATTTCAAATTCTCTTTGAG TTGATTGTACTAGATACCATTCATAAGTTAACAGGTAACCCTTAGCTGTGGGTATAATCTACTGTAATAA AGCTATTGTCAAGCTTCTCAAATCAAGGCTATTGAAGACATGATTTCAAATTAGAGTTTGTTTTTACCAA TGAATGTTTGATTAGTGCTGTACTGCAAGCCTCCCATTGATTTAAGAAGAAAGAATTTAAAGTACATCTA TAAACAGTGGGAACTGATTTATAGAATAAGCATGCGAGTTGAAATGGGATCATGTAGTTATTTTATATTA TTTTATTGTTTTTGTTTTTATTTGTGTGATTTGCTTCTTTTTAAAACGTTTTTATGCAATCCATATCATT CAATTTGTCTGTAAGCACTTGTTCAACATTTAGTTGCATATGGTGTGTTTGATAAGTGATTTCACTTATT AGCTATGAGACTTGACTTGTCTCTCTTATTGATGCCTTATTCAAATCATTCTACAAAGAAAGCTTTAGAT TACATTCTTTTTGTAGATTAGAATTTTATCTGCAAATTATTGCACCAAAACTTTGTAAACAGTTGCTTGT TGCTCATCATATTGTATACTTTGTAAATTTACAATTGTTTTGTACTGAAAATGTTAAGGATATTTGTCCC TAAAAGTGGATATTTTTAGGTGGCTGGTCGTATTAAAGCTCTGTAATTGACTTGGGTGCAGAGTTGAAGG ATACATTGCTGTTGTCTTATTTTATTCCACCCATTATTTGGTTCCAAGCAGAAGTGGATTTAGAAGAGAA GAATAAACGCATGTATCAAAACTCTCTCAGGTATCACAGTATCAAATAGTCTTTTGAAAGAAAACAAAAT CTTCCATTGGGTTGGTAACAATTTAACTTTCTTTCTTCTTAATTTTCATTGTTTTTATGCGAGGCATTTT CATAATTGATATCAAAGCCTCATGGCAATGAATTTGGAGATGTAAAAGCTAATCCCAAAATGAATTGCTA ATTTCACATTTTAAGTTAAGTTCTTTGAACTGTATTTGAAAAAAAAAGATGCAGGTAAAGTGGTTTATAT TACTGATTTTCTTTTACTCTCTTCTTAAATTTTGGTTGTCAATTTTGGAATTGACAATCTGTTTTTACCA TGGAGTATTCAAATGTTGTACATGTCATTTTTTCCTGGAAATTCTGTTTGACTTTTTTTTTTTATGTAGA CCATCCTTATTTTTGTAGCATATGTCCTCGCCATACCGTTCACACAGGCACCTTTACAATAAATTGAAAA CAATGAGTGTCGGCCATGTTAATAATATCACTTGTCATTTTCTTCCTTTTCTCTTTTTATTTACATTGAT TACTTTAAAACCAGATTTTTTGTGCAATATGAGCTTTTGTGACTTATTGAGGACAGACTTTTAGCAAGAA AAACTTTCACAAACTGCAAAAAGTTGAATGCTTATCATAGTTTTAATGGGTGTATACAAGTTATTAGTAA TTTTTAGGAGAAAAATATGCGTCAAATTTGAATGACTTTATCAGCAGCAGTGAAATGACTCTTGAGACAA AAGATAAAGCAAGAAGAATTACTTGTTAACATATCTGGGTTATATAAGTCTTTTGGGAGAAATAGGTCTA AAACAATATAATTATAGAAATTAAAATGGGTTGTAGATCAAGAAAGAAATGAGAGAAAGAGGAGAGATAA AGATAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAAGAGAGGAAAAGAA ACGCAGAAAGAAGAAGAGAGAGAAAGAGCATGAGTAAGCATTGAAAAAATATCAAGGTCTAGTCTGAAAA ATGTAATTGAAGCTTACTAGGCTTTCCTCTGTTAGTACGAGAAAAATCACAATATTACTTTTTCTACACC TCTAGAACCACTTATTTCAACAAATATTTTCATTCGAGGATATAACATATAAAACATTGATGACATATAC ATACAGACGTCACGGAATATAAGAATCTTTTGCATCTACGAATTACTTGGAACTACACAGATTAGCATAC ACAACGAACATTTACAACAGGCCAAACCCCAGTTACACCGCCAAACCCAACTTCAAACCGACCGATAAAC AAACGGACCGTGTTCACGAGGTCGAATGTGACTGGGCTTGAAATAACGTCTTTTAATGCTTAACACAAAT ACCAATTTATAACACTTGAGAAAATAATACATGTACATTTTAAACGTCTTACATTACTTTTCTGTAAAGG AAACAAAATCAATAATTTATTATGATAATTAACCTCTATTCATGTCAAGAACATCTCAGATGTATGCAGA TGTCCGTATTAATTTTGTAGACATGTGGTTTGATAAGAATAATCAGGAATCAGGAATCATGGCCCACACC ACTACAGGGCATACCATTTATATCTCATAAAAATGCTTATAAGTGCAAATATGTGAGTCATATATACAGA ATTAAATGATTCGTCATACCTTAATAAACTAGAATCTACGAGTTAAAAAGTTCTTCTTTTATTTCAGAAA GTAGAGATAATCGCGTACAGTCATTGTGAATGAAATACAATGTACACTTGTTTTACAGCCTCTCAAGTTA AACATTTCTAACCATCAGCAAGATGGCGATGATGACTGCTGTTGTCATGGTGATAAGAGAGAGAACACAT TTGTTGGCATCATCTGAGACGTTGATCTTCCAACCAAGGTTACGATGGGTGTAACACTGCAAGAGAAAAT AATAGTGTTGTTTGGTCATCGTTTGAAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds