Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT104137.1 TSA: Strongylocentrotus purpuratus WHL22.628622.3 mRNA sequence AAGCCATCTCATATACAACCACATCCCAGCCCGTGTCAGCAAGGAGCAAGACCAATTCCTGATCAACCCC TTTGGCCTCCTCTACCACGAGGTCACCGCGTCCTCCCTCGTCAAGCTCGACTCCGTAGGCAACATCATCG ACCACGGCACCACATCCTATGGCCCCAACCTGGCCGGCTTCACACTCCACTCCGCTATCCACAATGCCAG ACCAGATGTCAAATGCATCCTCCACGCCCACACGCCAGTCATTGCTGCTGTATCCGCCATGTCGTGCGGT CTCCTGCCCATCTGCCAGGAGGCTCTCATCCTGGGCGAGGTCTCATACTACGACTACAAGGGCATTATCA TCGATGACGAACAGAAGGACAGCATCATCAGGGCGCTCGGTCCCAAGAAGAGGGTTCTCTTCTTACGTAA CCACGGTGTCGTATGCTGCGGACAGACCATCGAGGAGGCCTACTTCCTCACGGTCAACGTCGTGGCAGCA TGTAACACACAGGTTCAAGCGATGACTGCAGGTATAGACCACCTGATCCAGGTATCATCGGAGATTGCAG AGAAGACCCGAGAGGTCGCATCCCAGGGCGGTGGAGGTGTACAGGGAGACGATCAGATCAAGAAATGGCG CTGGGGAGAGCTCGAGTTTGAGGCCATGATGAGACAACTGGATAACATGGGTCACAGAACCGGTTACATC TACCACGCCCCTCTGACCCGGTCTGAACCCAAGCCACGCAGCGACGTCGCCTACCCAGCCGTCTCCACTG GCGTCACCTACATCTACGACGACGACGTGGACGCCAGCAAGTACGAGTCGCCCCTCAAGATGCTCAACAG GAGAAAGGCAAACGAGAAGACCAAATGGATGAACACGCCCAACTCCTATTCCAAGGTGGAGGTGCCCGTG GAACAGAATGGAGAGGAGAGCCCCAAGACCAAGACAAAGTGGGTGAGTGAAGTAGACAAGACAGCAGGAC ACTCCACTAAGCACCAGGATCCTCAACAGTTTGCCAAGCAGAGCGACAACCCTAGAGAATTCAAGACAAA CGCCAAGAAGGTGACAGCTGAACAATTCACGGACAACAAGAACCCAGGCCCCACATCACAGGTCCTAGCT GGTATCGATGATGGACGCAAAGTACAGATCGTGGCAAACGACGCCCAGTTGTCTAATTCCCAAGAGAAGT TGATCCGCGAAACACAGGGCCAGAACATACAGCCTGGTCAGTTCTCCGTGGGGTCAAAGGGTATCGTCCA GCGTGACCACCAGAACGACGCCCTCGTTTACACCGTGTACTCGCCGAACCCGTTCTGCAGCATGACAGAA AAGGATATCCTGGAGTACAAGAGAGAAATCGCTGAGAAAACTGGACAAGATGTACAAGAGATTGAGCTGA TCTTCCAGGCCCCAGAGGAAGAGGACAACAAGCTGGTAGACGCCCAGGGTGAAGGCAAGACCATCACAAC TACCAAGATCTCTACTACAGTCACAATGGCAGGAGAGGGTGACACTGCCACAGTTCACAAGACAAGAGTG ACAGAGAAAACAACCATCAACGGAAGGGACGAAAACGAGGACGATGAAAGGGAGCCCTCACCTGGTGTTG ACAGCACAGGATCATCACCGACGAAGGACCCTATGTCGCCCTCTAAGAAGTCGAAAAAGAAATTCCGCAC GCCATCGTTCTTGAAAAAGAAAGAGAAGAAGGAGAAGAAGGGAGAATAGCGCCCTTTCTCTCGCACTTTG AGTCATGCAATGCGAAAGTGATAATTGCCGTGTTCTAGAAAAAATTTTCATCATCCAATGCAAAGATATC TGTAGGGATAATTTGTAAGTAAACCAGGTATGTGGCGGCATGTATGTTAGAACTCGGACATACCATGGAA TATATGTAAATTGATGAGTTGGTTATGGAAAGAATCAAGATACGCGATGTGTATGATATCTATAAAGTGT ATGCAACGACTCAAAATGACAAAGCTCTTAAGTCTCTCGGAGGCATCAGAAGGGCAGTGTTCAACGCTGT GTACCTAATATTAAAAAAAGGTAGTTGATAGAGTTCGATCCTTTGCATTTTCTTAGCCACTCTAGTGTAA ATGAATATAAGATGAGGTGATATAACGGATGTAAGGAATGCTCAAGTCTCGTAAATCAATCAAAAAGTAC TGATCTCTTTGTTATAATTGTGTGATGATTGGTTTTTTAATCAGGCTCTTCATAAACCTGTAGTTATTGT ACATCATGCCTGGTCTTGTTTGGAAATATTTCATGTTCTTATTCGTAGAGGAGGATTTCTTATTGCCTTG ACTGTTCTTTTCCAACAAGTGAAATGCCTCTAGGCGATTTCTGGTGTAATCCATGGAAAATAAGCTGGGA AGGCACATTTTATCTCCAAATTGAAATTTGTACGATCTATTTCATGCTGCATCGAATCAAAGCGTTCAGT AATAAGCTCCGCATTCTTGCTGTCATCCAATGACGACTCTTAGAAACGGCGTACGATCAGATGTTCTGAA ATAAATACATTCGTACCCAATTTCTTTTTTTCCATGGATTTTCTGTAGCTTGAAATCGCCTAGAGGTACG TTATTTTCATTAGATGAGCATTTTCATTGATATAATCATGTTTATTGCCAAAAGTACTTGTAAGTAGGTT TTTTTTTTCCTTTGCTATATATACTGATTATAATGCTAAATGACTTATTCTTATGTAGTATATGAAATAT GTGTATTGTGTATAAAAGTAAAATGAAAAAGGTAGCATGCATGATAGCATTTTAGTGGTTTAGAGCTATT CGTAATCATCAATTTTCCATCAAATCACCCATAATTAAACAAACAAAAAAAGAAAATTGTAGCATGCTAG CCGAACAGTCGTGTAAAATAATGCACTGTGCCCTGTCAACAGTGAGCATATAATTGTTGCGAAAGCGCTG TGTATAAAATTGTATAATCGATGATGCCATTGCGATTGTTATTTAAAAGCAAACATGGAGTCTTTTAGTA AAGTGGTTCCCTTAGAACGACAGGGACCTGGGGACAAGTTTGTTGTGTAAAAATTCTTCTTCTGTCGTTC CGGTGATTCCTACGATTCGAGTAAACGGTGTATTCATGTGTATTCATGTGTATTCAAACCTGTGGGTGGA CATGACGTTCTTTACTGCGTGGTAAAACTGAAGATTCATTTTTTTTTATATTTGCTGAAATGTTGAAGTG TAGTTATATGTAGTGTATAATATAGAGAGAGTGGACAAAAAATGTGATTTCACACAATCAGTGAAATGTT TAACCTTTTAAATAATGGCTATTAAAAGAATCATTCCCTTTTTGATGATGGGACTGACACGATATTACAA CATTTGATGTCTTACGTGTGTAAAGGTCGTGATGGGGGGAGACAGCGTTCATCCAATTTGAGTTACCCCG GACTGAGGTTGTTATGTAAATTATGAAAGCAGGACATGAATTTGAAGGCATGGGACTGGTATATCCAAAA ATGGATAAGGTTTGTGTGTGGTGTGCAATAGGCCCAGTCAGAAAGCAGAAAAATTGATTGTACAAAACGA GTCTACTCACAAGATTTCTTTTTTGGGAGCTTGCTGTGGAAGTTGGTGGAGGTTAAATGCCATTTTGTCG ATTGTACCTGTACATGCGTTACTGTGCAACGGTTCTCTGTAAATATGAGCTGTGTTTAAGAACAATGAGG AAAATAATTTTTACAAAGGTTTTTGGAGGACTTTTTTTGTGACATCATTCTGTTTTTTTTTTTTCTGTCT GGATTGTCTTTCGTTTGCCCGACGATGGTTTTCGTTCTTTGCAAATCTTCCCGCTCCATCATCCTGTGGT TATAATTCATGCAAAGCGTAGAGCTGATTGAATAGGGAGGTAGATCTATCTATTAGAGCATGGACAGTTC AGACAACGGTTGAGCAAGGTATAGAGAGGGAGATCAAGTTCTTGATATGTATACGGTTATTGGCAAGATA CACAAGGTGCCCTGTTTCGTAAAACTGACAGCAATAATGAGTCAGAAAAAATGGGAAAAAAGCTCTAGAA ATGATTGAATTTGATCAACTCTGAGCAGATCTGTTGCCCAATTCTAGTGGTTGTTAGCAAGTTTTATGAA ACCAGGCCCAGGTTTACTTACGATCTTAACCGTGTGATCTTGTGTAACAGACATATACATTGTGATATGG CAGGCTAAGTTAGGGCAAGTGCGTAGGCTGGGTTGCATGTGTGCCTTGGTAGTACTAGCTGTACATCTGG ATAAAGTCGCACTAAACCTGCCTTGTGAGATGGCAAAAGGGGGATGTACAAGTCGGCAGATTTGTGAGCT CGCTGTACGTTGTATAGTACTTGTAAATTATCTGATAGGAGTAAATACATCAATGTACAGAGTTGAATGC TAACTTGTTTTTTACCATAATTATACCTCGGTAACGCCATCATACCAACTTCAAAACCAACCAATCCTTG ACCATTTATTGTCATGTAAATTCTTGTTCGGTGAGTTGTCGGTCTGGCGTTAGTCTTTGTGGTGTGACTG AGGTTTTAATTGATGCATGGCAAAGCGGATGGATGATAATAGAAGGTTTAGTGCGACTTTTAAGAGCAAG CACAGTCGAAGTAGAGAGAAAGAGCGAGGTCTAACTAAAAGAGTGTCGATCATGTGATCATCACATGGTC TACATGCCTATATCACGTGCACAGCATGTTGTCGTCATGTGGTGTCCATGCAACCAAGATACCAGATGAG AAGAAAAAAAGAGAGGCAAAAATTAACTTCCACGTTTTAATCTTATCTGTGCAGGATGATTGAACAGTTT GGGGGCATTAAGAAGATTTAAAAAAAGATGAAAATTATATTTTTTATTTCTCAGACTATGGATGTGAAAG ACGTGTAAAGAAGCCTTGCTTTATTGAAATGTTATTGATTTAAATTCGTCGAGGATCCAATTCTGAAGAT TTGTAGTGTTAGACGTAGACTGTAGAAAACGAGACGCATTTAGACAGTAGCATGCATAAACTGCCAGCCG TTAAGAGTTGAAAAGATTGTTGGGATGGAGCGCTATGATATTCTTGTATTTAAAACTAAGGAAGAGAAAT TGGCAAAACGGGAAAATGATTGTTTGGTTCTCTTTGTCGGTTACTGTGATTTGTATTCAAATAGGAATTA TATGCATTGTTGATGTTGCTAAGATAATTCAGTGTACTGTAATTATTACGTATTCAGTGGATTTGGATTT TAAACAATTACTATTCATATTTAAAATGACTACCGTGTTCTAAAAAATCTACTTATAGGATCGTATCAAA TTTAAATCAACTTTATAGTACTTGTGTATTTTTCTGTTCTCCTACGGTGCGTTGACTATTCATGTATTCC TATTACCTTTTTTGGATGATAAAGTAATCTCTCCTTACCCTATGATTTTAAAGTAGAGGCTTTTTTCGTA TATGTACACACAATTAGCTTAATAGTTTAGTATATGTATTTGGTCAGAAATCTTTCTTTAGGCAATATTC AATGAAATATAAGTAGCTGCATTTATCTGTATATTATCACACTATGAAACACACAGCAACGTTGCAACCC ATTTCCATTTTGAAACATAGATAGATAGTTTACATGTATGCAGTAGACGTGGAGAAGGGGGAAAATTTTC GGTCTGCATTTTTTTATACCTGTTTTAAATTGATCATTTTGAGGAGACGCATCCAAGTCATTTCTCAAAA TAAATCTGCTACGTTTTTTTATGATCTTCAAAGCACATTTGTGGTCATGTTATGTACTTCACTTTTACCT TGTACAAACATTGATTTGATAATTTTACATTCATCGATGTAGTGATTTACAAAATGAGAATAAGATATTG GACAATTATGTATCCATGTTATCGTCAGTGTTGCCAATGTAGGGTACAAGATAGATAACTGCTGTATATT TAAATCAATCTCATTCTTTCGTTTCTTGTAATGAGGCCAATTTCTTTTTTAATTTTTACTTTTGCTTCCT CTTAGAGTCATATTTTGTAAACTATTTCGTAGAATGAATTCATTTACGGCATTAAAATGCCCATATGTTA AACAACGTGGACAGTACTAGGTACTAAGTCACTGTTTATTATTTTGTTTTTGTATCGTTGCGTCTATTCA TCGTTGAAGCCTTAGGAAACCATTTTTCTTTACTCTTTTCTCTTTTTGCTCGGCTTTTCAAGGTTTCTAC TCCAATCATGATATATCGCTTTAGTCTTGGACTAAGTCCGATTGGAATTGAACTGTTATGTATCATTACA GCAGAATGCCATAATTTCATTTATGCAAATGGACAATTAGAATAACACTGCAATGTTCTAGAGGAGAACT ATTCTAGATATGCTGGCTATGGAATCCTATTTTCTACTTTTCATTGATCATACATTTGGTTCGAGGATGA ATAAGATATTTCTAATCATTTTGTAGTCGTATGTTTGTCTGGTAATGCTTCTTTTTGCCAATAACAAACC AAATACAAGATGGAGGTGCGTTTAACTGCAATGGCTTTGGGGATTTCTTTATAGTTTGTATTATTTAACC AAGTTACTTCAGGCTTTAGAAATAGGATGAAGACATGTATGTCTGTATACTGCGATGTGTACATGTATGT ATGTAAGTGTCTCTCACAAGTATGTACATGGTCATCCATTTTTTTGAAAATGAAAGACCTTGTATCAAAA CATGCGTCAGACGGCATGATGAAGAGGACATGTATATACGTAGGGATGACTGAAAGTAGGCGTTGATTAG ACATCCAAAAGTAGAAGTTAACATTTTCAAGCCAAAAACGGTTATCAGAACATTCGGGTTAATTTTATTT ACATTCTTCATAATTTTCATGTATTTCCTGCTGCTTCTAACTAAGGTGCCCATGTGTTGTTAAGTCACTT CATCAACTAATTATTAAAAGTCTGCACTAGATTATTTCAAGCCAGAAATTCGACCTCAAGTGATCACACG TTGACAATTGCCTCCCATTGTACATTATTTAACAAGACCAATATGTAAGTTTTCCCTGTTTCTGGGACTA ATCCGAAAAATACAAGTATCGATATCTCATTCAAGATGTTTGAAGATCAGTATAGAAAAGAAATCACACC ACTGCACAAATGGTCTCCCATCAGTTTTCCTTTTACAAAACATGGATTGAAATTTCAGAAGACAAACGAA AGAAAAAAGATTTGATTGTGCCAGTGCTTGTCTTTGAAGGTATTGCATTCCAGTGTAACTTACCAGTGTT TTTTGACGTTTTGAATACTAATTTAAATACAATTCCTCTCTGTTAAATACAGTTGCACTGATAAAGAACT CCTTATGGTTATGAAATATAGTTCCATTTAATTTCACCTATCTAGCCTCTACTTTAGTGAGTGCGTGTCC TTCTTCGTGCATCTCTCACACACTATTTTCCCTCTGGAATTGCCATATAGTGAGTTATAAGTAGTAGTCT GTGAAAAAAGGGGGATTCCCCTCTTGCTTATATAGTTGCAATATTGTGTCTTCGTGTGATGATGGAAAAT AAAAAAAAAATAATAAAAAAACAATTTCGTTCCTGAAATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds