Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011665733.2 PREDICTED: Strongylocentrotus purpuratus prominin-1-like (LOC594323), transcript variant X8, mRNA GGAAGTTCCTGCTAGCTAGCTGCGTTGAGAAAGTGGTCAAGATATTCAGTCCGTGCACTACAAGAGAGAT CATAACAGACCGTGCAAGGAAGAGGATCGAACTGCCCAGGAAGGGCTCAAGAAGCCAGGCTGCTTTTAGT AAGAGTTGAAGGAGAAACAGAGAAAGAACAAAATGGAGAAAATGAAAAGAACTGGTCTGCATGGACTGTG CCTTGCAGTGTTGATTGTGGGCTTAGCCGTTCATGAGGCGAAAGCTGTTTCGGTAAATAACGATGGGAAC ATCACTTTTGCGGACCTCCCTGAAGGAGACCCGTACTCCTCACCAGAGTCCTTCGACGAAGGAAGCTTCC CCTTACCAACAACTTGGGATTTTATTGGAAACTTTCTATCTTCAGTCTCCCCTGGAGAACCACCTTATGA ATTGATCAACACCGTCGTAGGGGACTTTTCATCCGTAGACGTTGCTCTACTAACAGATAATATTACAACA TACCAGAAAAACCTGTTGGGCTTTGGGGTGGCCTTCGTGATCGGTGTGCTCTTCATCCTGATCTTCCCCA TCGTAGCCCTCTGCTTCTGCTGCTGCCGGTGCTGCTGCAAGAACTGTGGTGGTAAGATGCACATGGACCA GAAGGACAACTCCTGCTGCCGTGTGATGGTCTACTCGATCCTGCTCCTCGTTTCACTTGTCTTTATCTTT GCTGGTGCTGTGACAGCACTGTGTATCAGTGGATATACCGGTAGCCAGGCGCAGACACTGCCCACGAGGG TCAGCGATAACGTTCAAGATCTTGTTCTCTACCTGAACAATACCCTTAATGAGATTGACTTTGTGATGAC CGATCAACTAGCCTTTACCCTTGACCAAGTCAGGGACGATTTGAATGGTATTGGTGACTTGGTTGGCGTT CCTGTTCGTGAGAGTCTTCGTACGAATGTAGGACCAGCTATCGATTCAGTCATTGACATGGAGACCAACA TTGACGGAACCCTGTCCTCCATGGAAGCAGTCGATACTCTTCAGGCCACGATGGAGATTAACCGGGATAC CCTCGACACCAACTTGACTTCAATCTTGACCACTCTGTCTACCCTATGTGGTTCATGTGGCTGCTGCACT GAAGCAACAGCTAACCTGCGAAATGTACAGCTAAAGGCAGACTATCGGGATATAGACATTGGCGCGGGTC ATGGAAGCTTCCCACAAGTACTGGTGGATAGTTCAATTAGTGAGCTGACTGATGTGTCCAATCGAAATCT CAGCGAACAAGCACTAGAGGGTGCACAAACATTTGAGGACATCCCAGAGACTTTGCGTAATACAACAGCC TCTGATGTAGCAGATATCATTGTTACCATCGACGAGCTGGAAGGAACCCTCAATGAATTCATCAACACCA CCACATATACCTTGCAGAGCTTCTCTGGACAAGTTGAACCATTCGATGATACAGCCAATGACTACCTGAC TACGTACGCTGAGGACTATGATAAGTATAGAGCCTACGTGATGTACGTATTCTACGGATTCATTCTCTTC ATCGTAATCCTGTTCCTTCTTGGTTTGCTCATCGGAATCTTCTCGTATGACAGGAAGGCCTCACCGACAG ACCGCAGCTCATGCTCCAACTGTGGTGGACTCTTCCTGATGGCTGGAGCTGGTTTTGTCTTCATCTTCGG AGCCTTCATCATGCTCATAACTGCACTGACCTTCATCATAGGAGGACCCATTGACCGTCTCGTGTGTGAC CCTCTGGTCTCAGGACAGCTCTTTGCTCAGACGGTTGATAAATATGATGGAATCCTGGAAGATGGATACT ACCTTGGCAATTTGGTCTTCCAAGACCCTTCTGTCCCTTTCCAGATTGGTGGATTCCTAGATGCCTGTGA GCAGAATGAGGCTGTCTACACTGCTTTCCTGCTAGAAAACCTTTTCAACATCACAGAGTTTACTGATATC TCCTCGCAAATTCCCAATGTGGATGACCAGTTTGCCAATTTGACTGGAGACTTCAGCTCAGTGGAGATCC TAACGGACGACACCAGGCAGACCTTGATTGACTTCAGAGACTCGCCTGCAGATACCATTAATTGGACTTA CTTTACTGATGAGTTGGCCAAAGTCTTGATCTATGACGCTGATGGCAATGTGGACAGTCTATCGTCCCTC ATCACAGCTCTTGATACTGACGCAGCTGCAACTTCGAGTTCATCAGATGCAACGGCTCTCAATGATATCA GCGCCGATCTTCAGACTCTTCAAGATGATATCGTGGACGTTCTTCTCCAAGATGCGTCCGACATAGCTTC GGAGATTGTCACGTTGACAGGATATACAGACGTTATTGATACCAATGTGAATGACACCATTGCAAATGCA GAGACGGCTCAAGATTACATTGATAACAACGTGGGGACAGTTGTTCAAGCGTCTGTCGTCGATTACAGTG CCAGAGTTCTTGGTTACCCAGAGCAGTTTGTGACCTATGCTACAAACGAGCTGGAAACCACGATTGGAGG TTGTCGTCCGGTTTATAACTTGTGGAATCAAGCAGTCAACACTCTCTGTATTGGAATACTTCGCTCATTT AATGGTCTATGGTTCACTCTGGGCTGGTGTATCGTCTTCTTCATGCCTGCGCTTATCTTCGGTGTCAAGC TGGCCAAGTACTTCAGAACCATGGATACTTCTGATGGCTACAGCGATAATGATGACTTTGAGATGCAAGG GCAGCAGCACTATGGCAACAAAGTGGCCCCCACGACCGGATAAATGACAAGAAGGACTCTACGAGCCAGA ACCAATTCTCACAGGAACCTTGTGAAAGTATAAGACCATTTATAGGAGAAAGTTCCTCTTCATTTATTTT CCACACATGGTAGAAAAACCAGATCAATTTAATTTTCAGAATGTTTACCTTTATACCCATAAACTTTTTT TTTCAAATCTTCATAATTTTTTTGATTTTTTGCTCAATTAATGTATTAAAAATGTTTCCTTTAATCAAGC TTGCGGGCGTGCGGGCTCAAAAGTATAACATGACAATTTTTTTACAGTTCTCTTTTTAGACAAGTTTTCC TTTAAAAACTTTAAACATAAAATGTGAAAGATTGGTGGTAAAATTGGGCATTTTACATATCTTTGAACGT TTTCCATCAAATCAGCATACAAAGTCTTTCATGAGATTTCCATGCCTGGTGAGAGGTATTTTTGTATAAG CCTTATCAAATCACTGAAGCGACATCTTCTGCAGATACATTCCCGTCCAGAACTACATGTATTTTTTATT CAAGTTCAAATAATTGTTTAACTGGAAGTAAATATGAATGTCCTTTTGGAATGTACATTGTAAATATTGG TATTTTATAACAGAAATGTTATTCTTGTTTTAAGAAAATGTTGGAGATTCATTCGCATTATAACCAACTA GTGGAGGATTGAGTAGTTGATGGATCAAATAAAGTCTTTCTAAGTGTTAAATTTGGGCTTTCACATTGTG TCGCTGTTCTGCCTTAAATAGCGGCTTGTTTTATCGAAATCAATTTCCCTACCTACATTTACTGTCGCCT ACCATTCTGCGTTTGCCGCAGTGGTTAAAGGGCCGGTGGAAATGTTGCATATTTTATTCTAGCCTTATGA GATACAAACATGAACCGGAAATTACAATATTCAGAATTTTATTTTTTTCTAAAGAGATGATGTAAATATA TACTATTGAGGTTGACTTTTTTGTTTTATCTGTGTAAATTTCTGTCTGTATATTGATATATGATGAGTTG ATTTTTAATATTGGATCTGAGCAATGTTATGTGGAAGTCAACCTTGTGTCACCAATGGCCCCATGTTCTC CACAATATGAAATTCCTTCTAAGATTGCATCAACATTAATTTATACTTCTTCTCACTGAGTTTACGCTAT TTGTGAATGTGCTGCAATATTCTGAAATGTTATATCTGGCTGAGAAACCGTCATTTGTATCGAAATTATA TTTTCATTATATATCTTTCAGTAGGAACAATATACATTTTTGCAATAGTTTTTCAATAGACAATAGACAT ATAGGTTGAAATACAATTATAACTGAAATTTGCTGAACTGCATTTATAGTTGATGTTATTTTTTGACTAG TTTGAAATTGGTTTGGGGTAATTTTTCTTAAAGAAATGGAATACCACCATGTAGAGGCTGAATGAGTTTG AACTGCTCATCTTTGTGTCATTAACCCTTATATGCCAATTAAATAATCTTCCTGTGCCACATGGTACATA TCATGGAATAGACGTACTATAGGTTTGAGGTTATTTAACTGTGTTTCTAGTGCATGATAAATCTATATCG ATGTTAAAAGGGGTTACATGAAGCAAATCAAGTCCTGAAATTAGCCATTTTGGAAAGACATTGTGTTGCA CAAAGCATTTCGTCCATCAATTGTTTTGTGCCAATTGGCATGTGTGGCAAACAAGCAACCATGCCTATTG GCACTGCTGGCAAGTAAAAGGACAAAATGGCTGAGAAAAAATATAGCATGGCTGCGGACACTTACGTCAA GCCCTTTTTCTTCATTTGAATCCTTTCGTGTCATAGTGGCAAATTAAATACCAACCTAGGATGTCAATGA TGAACTATAATTGTCTACTACTACATTTATAAAAACTTGAAATGAAACAAATTTTTACAACAAAGAATTT CACTCTGTAAAAATCTGAAACAAACTTAAATAATAAAGGACTCGGAAATGAGGAACCCAGAGCCCTAATT GCTACCCAAAAGTTCTACATTGTAACCCTAGTGGCAAATAAAGGATCACATTTGTGTTTGTTGTTTTTTA TTGGTTACATTTTTATTCATGTACATAATGTATTAATGGTTTTAATTGGTTGATTTGTGCAAATTCGTCT TCATGGCAAAGATTTATTCTCAATCTGGTAATTTATTTTGACATTCTATGCATGCATTAGAATTGTAATT TGTCAATTATTTTAATTGTCAAGGATTCTAGTTTATCATATTATGATGATTTTCAAGAAATTATTCATAA AACCTTTTTTTTTAAAGATCAGAAAGATTGAGATTGGTTATCAATTAATAATTTGTTTATATAAAAAAAA CAATTCTTTGCATTTGTACATGTACATTTTTTAAATGCTTGCCTCTATTTCATATTCACTATCTAGACTT GGAAAACTGCCTAACCGCAGTTTTTCAGAAAAGCTTTTCCAATGCTTTGAAATGATTCATAAACCCACCG TGTTTGTTTTATGAAAACTCTCTAGCATAAAGTGATTTATTTTCTATTAGTATAGTGTAGTACCTTGATG AGGATTCATATTAAATGAGATATTTGTGCTTTATTATCTTTCTATGAACAGATTTTTATGGAGTGATATT TGCCGTTATAGAAAAATGTACAGGTTGAATACAAACAAAATATATTGATTATATAGCATAATTTTAGATT AGTGAGATAATAGGAAAGATGTATATATTTTTCACCATTGATATATTAGGTCTGTTTGGATAGCTGTTTA TGTGAAGGAAAATAATACTTTAACACTTGTGTTCTGATTTGGAAAAAAAATAAAGAATTTTCAAAATGGA AGGGAATTTTTTTGTATAAGCAGTATGCAATTCCGATAAGGATTTGAACGTTGGACATGCAGCAGCGCCT GGAAGCTATGTAGATGTGGTTTCTGCATCAAATGATGAATATACTATATAAACAAATACCAATTTTTGGG ATGTGAAGATCTTCAAAATCGTAGGAGAATTCTTTATGTAGTCTGTTGAATGAAATAAGAAAAGCTTGCA GAGAATTTTGAGAAATCAACTCCACAAAAATTTCAGTGCCCTACTGTTTTTCTTATAGGGACCAAGTGTG GATGAAATTAAGAAAAAATGAAATTGAAATCAAGTATTCATTATCCATTCAGAAATTTGTTTTTCACTGG TAAAAGTTTACAGATCTGTTTACAAAAAAAGAAATAATCATATTCAATTACAGTATTGGTAAAATACAGG AATACCAGCTTTGAAAGCTGTATATGTTATAAATTTTGCATATTACAATGGATGATGGACAACGCTTTGG AAATTACAGTGGGTTGATTTTCAAAAATCTTTTAGAAATTTAGAATGCAGTGAGTAATCGTTGAACTATT TTAGTAACCTTGAATTCTACTATTAAATTATTTGTATATACAGTATAGGACTTTCAAAGAATGACTTTCA AAGTGTACACTGAGGAGTAGCAGGAATAGAAGACTCGTTTGTTGAGATAACAAATAATGAATTATTAAAC CTGTCATTGCATGCTGTGCATTTTTGTTTTAATTCTTGGAAATGCTTGAAAAGGGATGTACATAGATTTC TCTTCTATCCTTGGCAATGTTTGGTGTTCTGGACGCATACTTTCAGTATTTGTGATCTTATTCACGTTTT TTAACTCTTCTAGATATTGGTAAAATTTGAGTAATTCATGTCAAATGATATGAATGAATACAAAGTGATA TTAATTACTGGATAATCAACAACAACAAAATGATTGATTATACGAAGTAAGTAATAACCTGACCATATAT AGTTTCCAGAAAACATTTACAAATTTGAATTGGTCGAAAGATGTGAAAATCACAACCTTAAACATACATT CCATGAATTCAAGAAAACTCCTCATTCCCAAAATCATTATATAAAGCTCATTGGTTTTATGTATTGTGAC AATGTGTACATGTCATAGTAGTCTAATGTATTGATTATTTAAGAGAAATGTTACGGTTGTATATTTTCTA TGTATAAAATATTTCTTGTTTGATGGGTGCATCGTTCACAGTTGAAATACTAAGTAGACAAACATTTTCC ATGTATGTTCTTTTGCATTTTAAATTTGACATGTAGCAGACATTACAAAGAATAGTCAAGAGAATTTAAA CTTAATCTACCTTAACACCCACACCCCCAACAAAAAGTATATACATTATAGTTTACATAGGAAAAACATT TAAACGGAAGATATACAGAGTATTATATGATTTAAACAAATATTTTCAGTATGACTATAACATTTGGCTT TTTTAATTGATTGTCAATCATGCGGGTTCGGTATGAACGTGAATTTGAGTGGTATCTCTCACTTTCACGT GAACAGTCGCATTCATTCCCCATTAAAGCTGATGACGATGTTTTTTGAGAGGACGCTAACTTACTCTAAT CTAAAGCTACAAATTATCTTTTCATGAAAAAGGGGACAAATGTGTAATTGTGATATGACAGTGCATAGTT TTATCAATTATTATCGATGGACATGTAGATCTATAATTAAATACTGCTTCTTTTTTCCCGCAAGAACAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds