Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030985700.1 PREDICTED: Strongylocentrotus purpuratus myoferlin (LOC575934), transcript variant X4, mRNA TCATCTTGCCTGGTACACGTACACACACCATTCGACTTACACTGGTGTGGGGTGACTTACGAAGGAAAGA CGGCGGGAAAGTAAGTTCTAAAACTTCTTTCCAGGGCCCTGGAGGTGAAGAAAGGAAGGATTTATACCAG GAGTTGGTGTCCCAGTGAAGGTTGCAGGTCACCATGTCTTTAGTTATTGTTGTGGATAGTGGGAAAAGTC TGCCAAACATCGAGAAGTTTGGTACGATTGACCCCTTCGTCCAGTTGAAGTTTGCAGGTACAAAGAAGAA GACAAAAGTGGTTGATGACTCTACAGATCCACAATGGGGCGAGACCATAGAATTCAATCTCAGTGACAAG CCGTTGACAGCCTCCGACTCGGTGGAACTCGAGGTCTATGATCATGAGAAGATCGGTCGCAACAAGTTGA TTGGTTCGTACACCTTAGCCTTACGTGATGTGGTCAAAGGTAAACAGAGGTCAAAGAGGATGGAGTGCAA GCTCAAAGACCACAAGGGCAGACAGTGCGAGGGTGTGGTTGTTTGCAACGTCACATACAAAGCTCCGGCT GGATCTGAGCCACCTCCATCTGGTGGAGGCAAGGGAGGAGGAGGAGGAGGAGACGCTTCCGCTGGAGCTG TGCAGGAAGAAGGAGAGGGAGATGAAGTAGATGGTGATGGTGGCGGTGATGGTGGTGGTGATGATGAGGG AGGCGACGAGGATGGCGATGATGATGGACCGGGAGGCGGAGGAGGAGGAGGTGGTAGCGGTGGCATTGGA GGCCTCAAGCGCAAGAAGAAGAGCCGCTCCAAGCTCTCCAAGAAGCCTCAAGACTTCCAGGTGAGGATCA AGGTATGGGAAGCTCGTCAGCTGGCTGGAGGTAACATCCATCCGGTCTGCAAGGTGACCGTCTCTAATCA GACTAAGATGACCAGGGTCAAGAAGTCCACCAACAGACCTTACTATGATGAGGTATTTTTCTACAATTTC CACATGAGCCCTGCTGAGCTGTTTGACGAAGTGGTCAACTTTCAGGTATTCAACTCCCGTCAGCTACGTA GCGATGCCCTGATCGGTGACTTCAAGCTCGACATCGGTTCCATCTATGAGGAAGAAGATCACAACATCGC CAACAAATGGCTCCTCCTCTCCAATGCTGATGATGCCAATGCCGGCGCTAAGGGCTACCTCCTCGTTAGC ATGGGTGTGCTAGGATCCGGAGATGAAGCTCCTGTGTTCAAGAAAGCAGATGAAGCCAATGACATAGAAT CGAATCTGTTGAGACCTGCTGGTATGTCACTCCGTAAAGGAATGTTCATAGTGAAGGCATACCATGCTGA AGACGTCCCACAGATGGATCCTGCTTTCTTTGAGGGTGTGAAGAAGTTCTTTGGCGCTGGTGATGGCGAA CGGAAAGAACTCGTAGACCCGTATCTTACAGTGGGATTCGCTGGAAAGAAGATCCAGTCATCTGTGAAGC AGTGTGATCAGAACCCGCAATGGAATGAAGAAATCCGAATCCCTATCAGGTTCCCATCGATGTGTGAACG TCTCAAACTTCAACTGAGGGACTGGGATCGTCTATCAAGTGACGACTACATTGGAACTGCCTTCCTTGAT TTGTCTGCCATGTCGAGCCCGGGAGAAGAAGGATATCTTCCCACCTTCGGTCCAACCTTTGTGAACTTCT ACGGCTCTACCAGGGAGTTCTCAGACCTGCCAGACCAGTTTGAAGATCTCAACATGGGCAAGGGAGAGGG TGTGGCCTACAGAGGGCGTGTCCTAGTCAAGATCGAGACCAAACTCGGAGATCATCCAGAGCAGAACCTC GCCGAGATAGAAAATGCCGAGATCCAGCGCGTGGGAAAGGTCCTCGGACGACGCAAGTACCGTCTCTACT GCGCCATCCTGGACGCAAGCATGGTCTGCGAATCGGACGATCCCGTCGAGTTTGAAGTGAGCATGGGTAA CTATGGTAACAAGCTGGACGACAGCGTGGCTCCACAGCCGTCCACCACCCAGCCGACCAACGCGGTGTAC GATGGATGCAAGTATTACTTCCTGCCGTGGAGTGAGAACAAGCCGCTGTTGATTGTCAACTCTGATTGGG AGGATATCTCCTTCAGATTGGACTCTCTCAACATGATCCTACGCAAGATTGAACGCTTGGAAGCTAACAT GGAACATGTCCGTCTAGCCACCAAGTCCGGAGCCCCGCAAGCAGAGATAGCTGCTCAGCTCATCGGCATG ATCGATACACTCATTGCCGACTGCAGGATGCCTCTCCCCAACATTGATGAGTTGAAAGAGAAGGTCAACG AACTTGATCGTCGTAAGTACGACCGCCGCCTCTACGCCATGCAAGCCATTGCCACTGACGCTCTGAAACT GAGAGAGAATGCGACTGATGTGAACGATGCCATGGAAGATGTGGAGGGATACCTACATGTCTTACAAGAT CTGGCTGTAGAGCCCCAGAATTGCATGCCCGATGTGATCATCTGGATGTTGAGTGGAAGCAAGCGTATCG CCTACACTCGCTTCCCGGCTTACCATCTTCTCTACTCGTCTCGTGGTGAGGACGCTTGCGGCAAGTTCTG CGGCAAGATATCAAGCTTCTTCCTCAAGGAACCGACGACCGACGTCGACAGGAGAGCTCCCGAGAGAGTC CCAGCCTTGTTCCCTGGCAAGAAGACAGCCAACATCGGTGTGAAGGAGATTCCGGGTATGCTCCGGGCCA AGCTGTGGTTGGGTCTAGAAAAGGATAGCGCTCAGTTCCAGGGCGGACTCACAGACTCGAGCATCGTGGT CTTCGCGGAGACGTATGAGAATCAGATGAGTGTTTTAGGAAACTGGACCAGCAAGGCACTGCCAAGACCA AAGTGGTCTGATGCTTCAGGAAAGATAAAGCTACCAAAGGAGAAGTTCCAGCTGCCGCCTGGATGGCGAT GGGACGATGACTGGTTCAAGAGCCCTGAACTCAGCTTGATGTACGATGCTGATGCAGGACAGACCAAGTT CCTAGAGGACATCTATGAACATGAGTCAAGGAACATTCCTGGAGGGTCGTGGCAGGTCGCTTCTGTGCCA TACACCAATGTGAAGGATGATCCTACCCCCAAGAGAGAAGAGTTCCCTTGCCCTGAGGGATGGCAATGGG ATGATGCCTGGGCCCTGGATAACAACAGAGCTTGTGATGAAGATGGTTTTGAGTACTGTGTGGAATCATC CGTTGCTAGCTGGGGACCAGTGGAGAGGACCTACCATCTGTGCCGACGTCGTCGATGGGTTCGACCACGA TCTCTGAACGCTGACCCCAAGGCTCTAGCGAAGCAAAAGAAGAAGGAGATGGACCAACAGGAGGGGTGGG AGTACGCCCCTCTCTTCAACATGAAGTTCCATTCCTCCGAGAGAAAGATGGACATGGTTCGACGTCGACG CTGGCATCGTAAGATGTTGGCCGAGTCCCCAAATGCCGCTGCTGTCTTCTCCGTCACTGGACCTGATGAT GAAGATGACAAGAAGGATAAGGACAAGGATGAGAAGTCTTCCAGGAAGTCAGCACCAAGGATCTTTGTCA ACTACACAGTATCTCACAAGTACCAGCTGAGAGCCTACATCTACCAGGCTAGGGACTTGATCGCTTCTGA TTCAGACAGCTTCTCTGATCCGTTTGCATATGTCAGCTTCCTGAACCGCAGTCAACAGTCCGAGACCATC AAGACCACCCTCAGCCCAACTTGGGACCAGACCCTAATCTTTGATGAGATTGAGATCTTTGGTGATCCTC AGATCATTGCTGCTAACCCACCAGAGATCTGCATCGAGGTCTTTGACTTTGACAGCTTTGGCAGCAACGA GTTCATGGGACGTACGGTAGTCCGCCCCCAGGTGAAGCTAGATCCCTCTGATCCGCGCGTAGCTCGTCTG GCCTGGCATCAGTTCTACAAGGGATCTGGAAACGCTGGTGAACTTCTCGCTTCCTTTGAACTCTTCCTCA TGTCTGATGGTAAGGATCTTCCATTCATGCCACCCAAGAAGGGAGAACTATTCATCGTACCCAACGGTAT CAGGCCTGTACTACAGCGTACAGGAGTTGAGATCCTCTGTTGGGGAGTGCGTAACATGAAGAAGTACCAG CTGGCTTCCGTGACCTCGCCCAGTCTCGAGTTTGAGGTCGGTGGTAAGATCATCAAGTCAAAGGTCATCA AGAACACCAAGAAGAATCCAAACTTTGATCAGCCACTACTCTTCCTTGAAGTGCATCTACCAAAGGAAGA GCTGTATACCCCTCCCATCAACATCAAGGTCCGCGATCACCGCGCCTTTGGTCGCAAGCCCATCGTCGGG ACCTGCTCCATCAAGAAGCTGCAACCCTATCGCTGCGTCCCCGAGATCGAGGGTGCAGAGACCACTGAAC CAGGAGACATGCCAGCTACCAATGGTAATGGTGCAAGAACCCCTGCACTACCACCACAACAGCAACAACA GCCCCAACAACAAGCACAACAACAACCTCCACCACCACAACAACAACAACAACCCCCTGTCGAGGGGGCA CCACCGGCCGAGACAGAAGAAATGCCCTCATTGGCTGAAGATGGCAAGACCCCACTGCCCCCAGCCGCAC AAACTGCTCCTGGGCAACCTAGAGAGGGCAGCACACACAGCCATGAGAATGCTGGGGAGGCTGACCATGT GATCATGATGCCGGAAGATGAACCAGTAAAGAAGGGCGACAAGAAGAAGAAGAAGGATGGGAAGGGTGGA GAGGAAGAGAAAGTCAAGAAGAAGGATATCTTTGAAGATGAGATTGATTGGTGGTCCAAATACTATGCCT CCACTGGCGAGACTGAGAAGTGTGGGGACTATCTGGAGAGAGGCTATGACAAGATAGAGATCTACAACAA GCCTTTGGAAGTTTTGGGAACAAACAACTCTTTCCTGGACTTCTGCAATTGCTACGATCTGAACCGTGGA AAGCAAGATAGTGATGAAGATGAAGAATCTTCTGGAGTGGGAGAATTCAAGGGTTTGTTCAGGATCTACG CCTTGCCTGGAGACCTGAAGGCAGAACTACCCCCCAAGCAGTTCAGCCACCTGCCCCCCTCAGCACCGGT AGAGTGTGTCATCCGAGTCTACATAGTCAAGGCTCTTGACCTTCAGCCTCAAGACCCCTCTGGACTGGCT GATCCCTACCTGAAGATCAAGCTGGGTAAGAAGAAGATTGATGATGAAGATGACTATCTACCAAACACCC TCAACCCAGTCTTTGGAAAGATGTTTGAGATCAAGACCTTCTTGCCAGTGCACAAGGACCTGAAGATCAC CGTCATGGACAAGGACTTGTTGAGCAAAGACGACATCATCGGTGAAACGGAGATCGATCTGGAGAACCGA TTCCTCACCGAGTACCGTGCGACAGTTGGACTACCAGAGACCTACAACATCTCTGGCCCCAACAAGTGGC GCGACCAGAACACACCGCGAGAAATGCTTGAGGAATACTGCAAGCAGCAGAAGATCTCTGGACCATTCTT CTATGGATCGACCAAGCTCACCGTGGAGGGCAAGATGTACAATTTGGCTGACTTTGAGGTGAACAAGATG CACAGTGAGCACGAGGGTCCCCAGGACCAGCGTCTGGCCCTCCAAGCCCTGCGCAGCTACCCCCTGGTGA GGGAACACATCGAGACACGCCCGCTCTTCAGCCCTCTACTGCCTGGTATCGAGCAGGGCAAGCTGCAGAT GTGGGTGGATATCTTCCCCATGACCCTGGGGCCCCCAGGTCCTCCCTGTGACATCACCCCCAGGCAGCCC AAGAAGTACGTTGTTCGTTGCATTGTCTGGAATGCCAAGGATGTAATCCTGGATGAAACCAACATCATGG GAGAGAAGATGAGTGACATCTACATCAAGGGATGGATGGCCGGTCAGGACGAGAAACAGGAGACGGATGT CCACTACCGGTCACTCAACGGTGAAGGCAACTTCAACTGGAGGTTCTGTTTCCCCATTGAGTACATCCCT CCCGAACAAGTCCTTGTTATCAAGAAGAAGGAACATTTCTGGAGCTTGGACAAGACGGAGACCCACGTCC CACCTGTTATAATCGCTCAGATCTGGGACAATGACAAGTTCTCTCCAGATGACTTCTTGGGATCGATTGA GCTAAACCTGAACGGCATGCCCAACCCTGCCAAGAAAGCTCGCCAATGCTCTCTCAAGCAGCTGCCTAAC GAAGCCAAGGGCAAGGAGGTCTCCATGGTCTCTCTCTTTGAGGCCAAGCGTCTCAAGGGCTGGTGGCCGG TCATCAGTGAGGAGTCCGGAGAACGGGAGATCACCGGCAAACTTGAACTGGAACTTGAGATCTTGACAGA GCAAGAAGCCGAGGAGAGACCAGCTGGTAACGCTAGAGATGAACCTAACGCCAACCCCATGTTGGATCCT CCAAATCGTCCTGAGACTTCTTTCAACTTCCTTCTTTCCCCCTGGAAATCCCTCAAGTACATCATCTGGC ACAACTACAAATGGTACATCATCGGATTCCTCCTCCTGCTCCTCCTCGTAGCCTTCATCGTCCTCATCAT CTACAACGTTCCAGGAGCCGGGGTCCAAAGACTCTTCGGTAATATATAATCTGCTAGGGTTGCCGACCTC CAACGACCTCTGTAGGGTAACGGACTCGAATCTGGTCTGTACCTTTGTAGAGAGAGAAAGAGATTGGGGG TTATCAAGTCGAGCATGGATCAACAGCATTCTCTGAAAGAGATGCTCCGCAGTATCTAGCCATGCTAGCA TGGTCGGGTCCCAGCTATTCATCGAGAAGGGGCATGTGGCCTTTTGGGAAGGGGGTAGAAGCAAAATGAA AAAGTTAGGATGAGGGTGATAGTCCAGCCATTGATGTCTAAAGTCATAGACTAGGTTACTCTCTAAGCAT GTGTAATGGTGGTGTGGTCAGCACTCACACACAGGAATGTTTCACCAAACAGTCATATAGGTGAAACAAC ATGTGCTTTAAACTAAAGCTGAACTTCATGTTCTGATATGAGAGCAATAGAATGTTACAAATTCCATATG CCTTTAAACCAAAAAATCTCTCAACCATATCTGTGCCTGTCACAATTTTGAATCAATTACTGATTTCTTT TCATGTTATTATAGGATGTAATTTAACATGCCTCCTGAATGTACTTACTTTATCCCCCCTCCACAATTGT AATAGTTGTATGATGCGACCAAACATTAAGTTGCAAACATTAAGTTGATTTATCGAAATACCCCAAAAAT GTTTAGAAATATATGCCCCACTCATGTTCTTTCTGTATCCTTATATTAGTGATTGTAAAATTGTTATTGG AAAGCTTAAAAGCTTTATATCTATATTTGTAGAAAAAATTAATCATGAAATAATTCAAGTTGCTCTTCAG TGCTTAGTTTTGTCTTGATACAACTAAAGAATGATCAATTAATGACCTTATTTATATATATTTTGAATGG TAAAACCATGTAATTTTCAATTTTTCCATATAAGGGAATCGATTATGAGAATATGAATGGATTATTAAAT CGTAGGGGAGAATTGCTTTAAATAATATGAATTTCCAATGTAATTTTCATTAATATATTCAGAATATGTT TTTGTTTCACAAGAGAATACTGTTACAGATAAATATCATGCATTACAAGTTAGGTCTAAGAAAAAGAGGA TGTAACACGAAAGCTGATAATTTGCGTAGCTTACGCAACCAATATAAGATGTGTATGTTATGTAGATATG ATGTATTATGTTTTTTTTTTATACGTATGTCTTATTCACTTTATATGTTTGTCTTATTATCTTTATATGT ATGTCTTATACACTTTTGTTTGATATTATTTCACTTTATTCATCATGGCATTTACAAGGTAGTCAAGTAA CATTCTTCCCACAGAATGTTTTATGTTGCAATGCAAGAAAATTCCTAAAAACCTATTATACCATAGTATA GTATAGTTTATAGAATCTATTTTATTTTAAGTGTTTTTTGGTAACAAAAACTGAACAAAGAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds