Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_786031.4 PREDICTED: Strongylocentrotus purpuratus mitochondrial Rho GTPase 1-A (LOC586242), transcript variant X2, mRNA TACGGTGGTCTGAACTGCGCATGTCGATTGAACTTTGTACCGGTAGTGCACGGAGTCACGTCATGTGTAT TACCATCTGTATTGAGCAGTTGTCAAACATCCTTGTAAGTAGTTGAGAGTGAGACCCACCATGTATGGCA GACGAGATGTACGCATTCTTCTCTTAGGAGATGCTGGTGTTGGAAAGACATCTCTGATTTTGACGCTCGT CAGCGATGAGTTCCCAGAAGAAGAGGTCCCAGCGAGAGCAGAAGAGATCACAATACCACCCGATGTCACC CCAGAGAAAGTCCCTACCCACATAGTAGATTTCTCAGCTCGAGAGCAGAGTGATGAGATTCTCCTAGAAG AAATAGAAAGGGCTGATGTGATATGTGTGGTGTACGCAGTGAACACCAAGGAGACGATAGACAGCATTAC AGACTACTGGTTACCGCTGATACGGAACACCTTAGGCTCAGATCACCTGACACCTGTCATCATCGTAGGT AACAAGTCTGATCAAGCTGATGCTAATAGCTTGGAGACGGTCGTACCGATCATGAATGACTATGCAGAGA TTGAAACCTGTGTAGAGTGTTCGGCCAAGAATCTGAAGAACATCTCTGAAGTGTTCTACTACGCACAGAA AGCAGTCCTTCACCCTACAGGTCCATTGTATTCAGCAGAAGATAAAGAACTCAAACCAGAATGTAAGAGG GCGCTTTGTAGAATATTCAACATCTGCGACCTGGACAATGACGGCATTCTCAATGACTATGAACTCAACT TGTTTCAGAGGAGATGTTTCAACGCACCACTCCAGCCTCAGGCCTTAGATGATGTGAAAGCAGTAGTTAG GAAAAATATACCAGAAGGTGTAATGAACAATGGACTCACTCAAATAGGTTTTCTCTTCCTGCATACGTTG TTCATTCAGCGAGGGAGGCATGAAACAACATGGACGGTCCTTAGGAAGTTTGGCTACAGTGATTCACTCA AACTCAACTCAGATTACTTACAACCAAAGTTGAGAGTAGGTAGAGGGTGCTCTACTGAGTTGAGTCATTT AGGCTACCAGTTCCTCACATCTCATTTTGAGAAATATGACAAGGATCGTGATGGTGCCTTATCACCAGCG GAGTTACAGACTCTGTTCCAGACATGTCCCATGATGCCTTGGGGTCCTGACGTCAACATGACAGTATGCA CCAATGAGAAGGGTTGGATCACGTTACATGGTTACCTATCACAATGGACTTTGACCACATTACTGGACAT TCAGAGAACGCTGGAATTCTTAGCATACTTTGGCTACAGATATGTAATGGCAGATCATGAGAATCAGCTC TCAGCAATCATCGTCACGAGAGACAAGAAGGTGGATCTTCAGAAGCGTCAAACATCTCGTAATGTCTTCC GTTGTAATGTGATTGGTCCACGAGGAGCAGGCAAGTCAGCGTTTCTTCAGGGTCTCACGGAACGTAGTCT GGATTCACCTGTTATCATGAGGGATAACCTGTCAGCGTATGCCATTAACACTATACAGGTCTATGGACAG GAGAAATATCTTCTGCTCCGTGAGATTGATGTTGGTCTATCCGATGAGCTATCTTCAGAAGAGCTCGAAT GTGACGTGGCTTGCTTGATGTATGATATCTCTGATCCAAGAACCTTTGAATACTGTGCTAAGATTTACAA GCAACACTTTGAGAGGAACAGTGTTCCATGTTTACTGGTAGCTGGTAAGAGCGATAAGCATCCCGCTAGA CAGGACTACCCTCTTCAGCCGGCTCAGTTCTGCACCCATTACGGACTCCCTCCACCGCAGACATTCAGCA GTGTAGGAAGACCTAACAAGGATATCTATGTCAAGCTGGCTACCCTAGCTGCTTACCCGCATCTGAAAGG GATCCAAGAAGAGGGAACTCGTCGCTGGATCAAGGTTGGTCTAGGTCTAGGAGCTTTTGCAGCCAGTCTC TTTCTTGTCTACAGATTCATCAGAATCCAGAGATCATAACCCTCACCCTAGCCATCTATCCATCATAGCT CTATAGGTTTGAGTATTAAACATGCAGTATCTCACAATGAATATAAATATTATGACATTTGAATGAATTG TGGTATTATATTCAATACTACCCCAAGAAGAAGCTAGCTGCAAGTTACATTTTACCCCCAGCCCAGCCTT CCACCATGTGAGAGCTAACTAAGAGGACTTCTTTATTCCTCTTTGATTTGCTCCTTTGTCAATACCATAG GTGAGAATATAAAGTTTCCTGTGGGATGCATTCATGGGCAGGTCATGAGCAGAGTGTTCATTTTACAGGG GAAACTCGATATAACGAGGTCAGCCATAACGAGGTATAGGTTGTAACAAGGATATTCTCACAGGCCCAAA TCAATTTACGTGTAATTCTATGGTGATATGAACCTCTTATAACGAGATCTGCTATAACGAGATATCGGCT AAAACAAGGAAAATCAATGGGTCCTGGCGGTCTCGTTATACAAAGTTTCCCCTGTACACATATTCCTACT TGTTTCATTAATAGGAACCTTTCTTTTGTTCTGGATCAGTGGTCGTGCGTAATGTTTTTATTTCTCTGAT CTTGTATCAGATTGAAGAACGTATAGTGATAAGCAAGATGAAAATAAAGCTGCAATGTAAACCAAAACTG ATAGCTCTTTCAAGCCTTCTTGCACTTCTTTCAAGAAAAGAAACAACAAGAATACTGACTAGTTTCATGC ACTGTAAACATCAATTTAGAGATCAGTATGACACTGTGTTTGGGACCAATTTTTACAAGCCTACTATAAG TGTCAATTCTGTAGTAGGGACCTACTAAACAATTTCAATGTAGGATGACACTACTGTTGTTTGCGTCTCA ATTGACAATAAATTTTAACTTCAAGTGCTTGCCATTTGTCTTTTGGTAAATTATAGGATTATACTACCTT TATCGCTAAGGTGAAAATGGTACGATGATGCCTGACATGTTATAATGTGATTTAAGAAATAAAATCACAT GGTGGGAAAAGAGACGAGGTCATTATTGACATGTTCTGTGCTTGCTTTTGGAATGTCTCAATCTGTCATC GGCCTATTGAAATATACTGATAAGGTTGAAATATGCGACTCAAATACGTCTTTTGTATTTTTCATACGAT GGTAATTAATCATAGATACAGGAGACTGTTTGTGAAAGCCACAATATGGTATTTGAGAGTCTTCTGATGA TAGAACACTATGCTATTGGCTTTCTTTTTACAAAGTTAAAAGCTATCAGATGATAAAATAATACAAACTT GTAAATTGGAGTTTAATGATGAGGATTAGACACTAATGCTGGCTGGGTCCATTACATAATCTGTTAAAGT TGTTCCATTTTCTATTTCTGCTTTTGATGCACAGCCGTAGACATGTGATCTGAGTAGCTGTGTATGTATT GGCAACTATTGGCAGGGAAGGGAGGAGTGGTATTTGACATTTCAGATTCATTTTTTTTCAAACCAATCTA CAGAAATGTGGATGTTCATCCCATGTATTGCAATATTTGAAGAACTACAAATCAAATTTGATTAAAATCT TTTTAGAAATGTCACTAGACAAGGGCTGGGGTACAATGAATTATCAAAGTGTCAAAGAGATAAAATGTTT GATGAAATGAGTTGAAGTATATTCCATAGTATTTACCTCTAAGGGAAAATGAATGTGTCTGGTGATAGGA GATTCAGGAAAGGAAGTTACTATGACAACTATGAAATTTGTGTAGAAGCAGAAAGGGACTGTTAATGTGT ACCAGTCACCTAAAAATATTTTGTGTACAGCTAGAATGTATAATATCACCCACAAAACAAAATTTCAATT GGCTGTCTATTAGCTTTATAATGTCAAATGAAGAAAATAAAGAATAACATAAAACTGCACCCACTGTTGC ATGGAACGGGTATGGGTGCATCAAACGGTCAGAAGTCACTTATGTGTTTTATGAGTGTGTATTAAAACAG GCAAATATCTTTACAGAAGCAATATATGAAGCTCATATCTTGAATGTAGTATAACAACATGGAATTACAT ATATACAAAACCAAATATATTTTGGTGATTGGTATACTTTAAAGAGATATTATATGCCCTGGTTGCCCTC CTGGTCCTTCGCAGATGATGTATTGAAAGAAAGAAGATAATCATGTAGTCCTTGTAATGTTTTTATTTGT TTGTTAAACATTTCATAAGCTTTATTTCTCAAATAAGATAATTGAATGTATTGATGAATGCATTTGAGGG ATGATGGTTGAGTTGGATCTGTATGTATTCATAGTAGCTTATGTTACCGTCCTGTGCTTTTTAGGATAAG AAATAACTCTAGCCCTTCTGGAAAGCTTTTTGCAATGATATTTGTGAATTGAGGCATGAGCATGTATATG TCGCACAGATGATAATAATAATAATAAATATTTATGAAGCGCACTTTTCTAATTACTTACTCAATGCGTT GTACAAAACAAAATACACAAATATGTCTCCAGAATTTTAATAACATAATATCATTTCATTTGTAACTCTG AGCAAAGAAAACCGTTTTAACATGCTTCGGAAAGGTTTCGAGACATTGAATGTTTCTAATGGCACTAAAA AGTTGAATCAACCGTCATGGTTTTTTCATTGTCTTGTTATGAAGAATTATATAAGAAGGTTATCAGTAAC ATAGAAACTTTCTGTTCCTAAGATGTGTGCTGGTACTCTTACATCAAAACTATGTTTTATTCAAAAGGTT TAATAGCCTCGGTGTACAGGACTACTCTGGAAGTTGAATAAGAGATCTCTAGTCTGTATACCGGTATGAC AAATAGGACAGACTTCTTGCATGGATCACAGTTTCATACAAACTGAAGCTCAATTTTGAAATATAAACAT CTGGGCCCTGTTTCGTGAAACTTGTTGTCAATACCGAGGTACAATAATTATCATAAGCTACTGAAATCCA GACATTTGATTGCTAGGCTCAGATTTGTCATAGATCTGTGGCAGTTGTTATTGATAACAAGTTTTATGAA ACCGGTCCCAAATCTTTTATCTATGAAAACTGCACAAATTGCCAAGGGCTTCACAAATTGGACAGATTCA GTGTTGTGTTTATATTATTGCATTCAGCTTACTGGATTTACAGCCAATAACTAGCTCTTTATGGTGTTGA TTTGCCTGATATATGATATGATGTATTAGCCTGCTTCACAAGCTTGTCCTTAGTGACAAATGACAGCTTT TGTTATAAGGTAGTGAAATCCTTGCTTCTGATCGGTTATCAGCAGATTTGTCACTGATTTTTTTTTTCAT TCATTTGTCGTTGAAAAAAGGCATTGTGAAATGGGTCCCTGAATATCATCCTTTGGGGTCAGAAGGGCAT GAACTCATATACTTTAACACAGAGTTAATGCCTTTTTGGCTCTGAACAGACATTAGCATGATTACTAGCA CAAACAGATTTCATTGCCTTACAATTAATTCCATGCTAGTCTTGCAAACAATGAAGTAAAATGTGACCAA CCTTTTAATGCTTACTTGAAAACATTGTTTTGTTTTCACATGATCAAAATTGTAATTTTCTCCCAATAAT AGGCTTTATTGCCCTTTTAGTGTGTAGGAGTGTATTATTCCTCAGTCCACAATAGTTTGTTAAATATATA CATGTATTGACAATGCACTTGATAAGATAAAGGCACAACACACTTATCACAATATACTTTGATTTATAAT TCATTCCAATTCAAGAAATTGTAAATGCAATATCAATTACACATGACATAGTGATTTGCCGATGTCGAGG TGTCATGTTTAAATGGTTAGTCACTAAGGAAGACTGGGAGTGCATAGGTCATGGATTCAAGCCCCAACAT AGCACATAAGTCCTTGAGCAAGGCATTTTATCTCCACATTTCATGCTTCTGTCCACCCAGGTGCTAAATG GTTACCCCATAGGATAATAATAAATAATAATATATTTCTATACCGCAAATTGCAAATTGACTCTAAGCGG TGTAGAAGGAAAATAGTTAAAAGTAAATGTGATTGGATTAGCATGTGCATGTGCATGAAAAGGGGTACTG GCTGGAATGCCCCCCCCCCCCCCTCCCCAGGGAGTGGAGAGTGAGCACTGTGTTGAGTTCAGTGAATGGG GTAATAATAACACTGTAAGCACTTTAGTCGGTTGTAACTGGTAAAGCGCTTTATAAGAAACAGTTACTAT TATTATCGATCGTGTCATATGTCTTGTCTAAACTTAAAAGCGTGTATAAAAATGAAGGTCTTGTAGTTCC TGCAAACACGGTCATTAACCCCTTGATTATGATGTTACAATACAACACAGTCCCATGTAGAGATTGTGTT TGTAAGAAAGGTATCTTGGGTTAATGTGATTGCTTCAATCACGCTTGGTACCACTTGACTTATACCCTAT GCCTAGGATATATACGTCCTATGCCTAAAATATATCAGTTTGGTTATGTCCACGTTTGAATTAATATCAT AAGATTTATATTTGCTGGTATACATGTACATGTGTCTGATCTTAAAAGATTTACCAAGAAAATCTATTTT GCATACTTGGTACTATGCATCTTGTGTTTGTTTTATGATGTCTCCTTTTGTATTATTCTTTGAAGTCAAC AAACAGAAGGATATATCAATTGAATGCATGAAAATGCATGTAAAGGATTGGAGGAAAGGAAGGCAATAAA ACAAAAAAATGTTCTATCAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds