Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011684597.2 PREDICTED: Strongylocentrotus purpuratus myosin-16 (LOC580674), transcript variant X7, mRNA ACTTGAATGGGTGTTAGTGAGCCCGAGTTGTTCATGTCACAGATTGTTCTAGCTTGCAATCTGGTAGGAC TGTCTCCAGTCTTCCTCCGACTTCTCTTCCTCAGGCACTTTGAGCGCCAGACTTCACTCTTTCTCCGGAT CGCACCAACGGCGGCACCATGGCTGACGAATCGGATCAATATTTGCAGGTGGGCAAGAAGGCCCAGCTCG AGTCTCAGGCTCAGAGCTTCGACGGTAAGAAGATGTGCTGGATCAATGACGACAAACAAGGATACATAAA GTGCGAGATCCTCAGCACGAAGGGCGAGGAGTGCACCGTCAAAACAGCCACGGGAAAGCAAGTTACCGTC AAGAAGGATGACACCCAGCAAATGAACCCACCTAAGTTCGAAAAGATCGAAGACATGGCTGGTATGACCT ACCTCAACGAAGCCAGTGTATTGGAGAACCTCAGGCAGAGATACTACTCTGGTCTCATCTACACCTACTC TGGTCTGTTCTGCGTGGCTATCAACCCATACCGTAGGCTCCCCATCTACACCGACAAGGTAGTCATGCTC TACAAGGGTAAGAGGCGTACCGAAATGCCTCCCCACGTCTACTCCATCGCTGACAACGCCTACCATGACA TGTTGCAGAACCACGAGAACCAGTCCATGTTGATCACTGGAGAGTCAGGTGCAGGGAAAACAGAAAACAC CAAAAAGGTCATCCAGTATTTTGCCAACATTGCTAGTGTATCCACCGGAGGCAAACTTCAACAAGACACG CCAGAGGGCGGCAAGAAGGGTAACCTTGAGGACCAGGTCATCCAGACCAACCCTCCTCTTGAGGCCTTCG GTAACGCCAAGACCATCAGGAACGACAACTCCTCCCGTTTCGGTAAATTCATCCGTATTCATTTCGGCAC AAGCGGTAAACTGGCCGGAGCCGATATTGAGACCTATCTGCTTGAGAAGTCTCGTGTGATCCGACAGAAT GGTGTTGAGAGGTCCTACCACATCTTCTACCAGATCTGCTCTGGGTACAGACAAGATGTATTGGACACTC TGCTGCTCGAAAAGGGCTGCAAGACATACTGTTTCCAGAACCAAGGAGAAGTTGAAATCGACGGCGTCGA TGACGTCGAGGAATTCAAACTTACTGATGACGCCTTGGATGTCCTGGGCTTCTCATTCGAAGAGAAGATG TCCATGTACAAAATGTGTGCCACCATCATGCACTTCGGAAACGTCGAATGGAAGCAGAGGCCCCGCGAAG AGCAGGCCGAAATCGAGTCGACAACCATCATCGACAAGGTCGCTTTCCTGTTCGGTATCAATCCCCAGGA ACTTGTGAAGAACTTGCTGAAACCCCGTATCAAGGTCGGTAACGAGTACGTATCCCAGGGACGTACCAAG GCTCAGGTCGTCTACTCAGTCGGTGCTCTGGCCAAGGCCATCTACAACCGTCTCTTCTCCTGGCTCGTAC AGCGTGTCAACAAGACTCTGGCCACCAAGGCTACCAAGGCTTTCTTCATCGGTGTACTCGACATCGCCGG GTTCGAGATCTTCGACTTCAACACTTTCGAGCAGATTTGTATCAACCTGACCAACGAGAAGCTGCAGCAG TTCTTCAACCATCACATGTTCGTTCTCGAGCAGGAAGAGTACAAGAGGGAAGGCATCAATTGGGTGTTCA TCGATTTCGGTCTTGATCTCCAGGACACCATCACCCTCATTGAAGGACAAATGGGTGTGTTCGCCATGCT TGAGGAAGAGTGCATGTTCCCCAAGGCTACTGACTTTACCTTCTTGGAGAAGTTGCTCAAGCAGCATGCT AACAATGCCAAGATCACCAAACCCTCTGTTGGAGGGAAGAATGTGAAGAAGCACGCTGTCCACTTTGAGA TCCATCACTACGCTGGAACCGTGGACTACAACGTCGAGAGCTGGCTGGACAAGAACAAGGATCCTCTGAA CGAGGCCGTTGTCGAACTCTTCCGCAAATCTACCGACGAGCTCCTCGCAACCATCTTCACAGATGCCGCA GCGGCAGGCAAAGGCAAGGAGAAGAAAATCAAGACAATTAGCGCCGGGCACAGGGAGCAACTGACCCGTC TGCTAGCCACCCTCTACAACACACAACCTCACTTTGTGCGTTGCATCATCCCCAACGAGAAGAAGGCCCC AGGTGTCATTGATGCCTTCCTCGTGCTCCATCAGCTCGCCTGTAATGGTGTGCTTGAAGGCATCCGTATC TGCCGAAAGGGATTCCCCAACAGACTGCCCTTCGGTGAATTCAAGCAGAGATATGCCATCCTTGCTCCCA GCGCCATCCCACAGGGATTCCTGGACAGTCGCAAGGCTTCTGACATGTTGCTTAAAGCTTTGCCTCTCGA GGAGAACGAATTCCGTATGGGACACACCAAGGTATTCTTCCGCGCTGGTGTCCTGGGTAAGCTTGAAGAG TGGCGTGACGATCGTCTGGCCGAGATCATCTCCATGATCCAGGCTCAGATCCGTGGTTACCTCGGACGTA TCGAGTTCAAGAAGATGCTCGACCAGAAGCTCGGTCTGGGTGTCATCCAGCGTAACCTCCGCAAGTACCT CATCCTCAGGAACTGGGGTTGGTGGAGACTGTACACCAAGGTAAAGCCTCTGCTGAACGTTGCCCGTGCC GAGGATGAGATGAAGGCCAAGGACGACGTCATCAAGAAGGCCAAGGAGCTGCTCAAGAAGGAGGGAGATG CAAGGAAGGCCATGGAGGAGAAGAACGCCGACCTACTCAAGGAGAAGGCCGATCTCCTTGCTCAGCTCAA CTCCGAGGCTGAATCTTCCGCTGAGATCGAAGAGAAGTTCACCAAGATGATGTCACTTAAAGCCGATCTC CAGACTCAGCTAACAGATCTGCAAGACCGTCTTGAGGAGGAAGAGGACGCTGGAGCCAGCGCCAGTGCCG CCAGGCGCAAGCTCGAGCAGGAATCCAGTGAACTCAAGCGTGACATCGAAGATCTCGAGATATCTCTCAC TAAGTCCGAAGAGGAAAAGAAGCAGAAGGACGCTGCGATTAGGAGCCTGAACGACGACATCGCCGCCCAA GACGAGGTCATCGGCAAGCTGTCCAAGGAGAAGGCCAACCTGGAAGAGGAGCACAACAAGACCCTGGACG CCCTGGCCCAAGAGGAAGAGAAGGCAAACCATCTCTCCAAGGTCAAGGCCAAGCTGGAAGCTTCAGTCGA TGAGCTTGAAGACGGCCTCGAGCACGAGAAGAAGATCCGTGCTGATGTCGAGAAGGTCAAGAGGAAGCTC GAGGGCGACCTCAAGATGACCCAGGAGACGGTAGAGGAACTGGAGCACGCCAAACGCGAGGCTGAGGAAT CCATCAAGAAGCGTGACTTCGAGGTGTCTCAACTCAACACTCGCCTTGAGGACGAGCAGAGCCTGGTGGC ACAGCTCCAGCGCAAGATCAAAGAACTCCAGGCCCGTATTGAAGAGCTAGAAGAGGAGTTGGAAGCAGAG AGACAGAATCGTGCCAAGGCCGAGAAGCAGCGCGCAGATGTGACTCGCGAGCTCGAGGACCTTGGTGACC GTCTTGAGGAACAGGGAGGTGCCACCGCCGCTCAGATCGAGGTCAACAAGCGCCGCGAAGCCGAGCTGTC AAAACTCAAGCGTGAGATCGAAGACCAGATCGTCCAGCATGAGTCCGTCGCCTCACAGCTTCGCAAGAAG CACACCGACTCCGTCGCCGAACTCACCGAGAACCTTGAGAGCGTCAACCGCAACAAATCAAAGATGGAGA AGGAACGCACACAGCTGAGGGTAGAGCTTGAGGATGTCAGCAGCAACATGGACTACATCACCAAGGCTAA GCTCAATGCCGAGAAGTCCTGCCACCAGCTCGAGTCCCAGCTCAGCGAGGCCAACGCAGCTCTTAACGAG CGCGACCGCGCCATCAACGACCTCCAGAACTCCAAATCACGCCTGGGAAGCGAGAACTCCGACCTGGCCC GCCAGCTTGAGGACCTCGAGAACCAGCTTTCTCAGCTCAACAAGACCCGTATGTCCCTCTCCATGCAGAT GGAGGAATACAAGAGGAGCTCCGATGAGGAATCAAGGGCCAAGAACTCCCTGGCCTCTCAGCTCAGGCAA CTCCAGGCCGACAACGACCAGCTCCGTGACCAGGTCGAAGAAGAGTCCGAGGCCCGCGCCGAAGTCCAGC GCATCCTCACCAAGGTTAACGGCGAACTCAACCAGATGCGCGCCAAATTCGACGGTGAGGCCGTCCAGCG TGCTGAGGAGCTCGAAGAGGCCAAGAGGAAACTGATGATCCGTCTTGCACAGGTCGAGGAAGAACTGTCC TCCGCCCTGTCCAAGAACGGCAGTCTTGAGAAGACCAAGGCCCGCTTGACTGGTGAGGTCGAAGACCTTC AGCTAGACCTTGAGAGGTCCAACCAGCTGTGCGCCACACTCGAGAAGAAGCAGCGCAACTTCGACAAGGA CCTTGCCGTATGGAAGGAAAAGTGCGAGTCTCTGGCTGTCGAGCTTGACATGTCCCAGCGCGAGGCCCGT ACATACAGCACCGAGCTCTTCAAGGTCAAGAACTCATACGAGGAAAGCCTTGAGGTCATCGTCAACGTCC GCCGTGACAACAAATCCCTTCAGGATGAGATCCAGGACCTTACCGACCAGCTCGGAGAGGGTGGCAAGAA CTGCCACGAGCTCCAGAAACTCGTCAAGCGTCTCGAACTCGAAAAGGATGAGCTCCGCGTCGCATTGGAG GAGGCCGAAGCCCACCTCGAAGCCGAGGAAGCCAAGGTCATCCGTGCTCAGCTTGAGATCACACAGGTCA AGCAGGAGTGCGATCGTCGCATCATTGAGAAGGATGAGGAATTCGAGATCACCCGCAAGAACCACGAACG CTCAATGGAATCCATGCAGGCTAGCCTTGAGGCTGAGCTTAAGGCCAAGAGCGATGCCCAGAGGCTAAAG AAGAAGCTCGAGGGCGAGGTCAACGACTTGGAAATCCAGCTCGACCATGCCAACAGGAACAGCGCCGAAG CCATCAAGACCATCAAGAAGCTCCAGATGCAGGTTAAGGAACTCCAAGCCACCGTTGACGAAGAGACCCG TGCCCGCGAGGACATGCGCGACCAGCTCCAGATCACCGAGCGCCGCAGCATGATGCTCATCCAGGAACTC GAGGAGGTCCGCTCCGCCCTCGAGACAACAGAGCGCCTTCGCAAACTGGCAGAGGGAGACCTCCAGGATG CCAATGACCGTCTGGCCGAAGTATCTGCACAGAACCACGTCCTGAGCAACCAACGCCGCAAGGCTGAGGC CGAGCTCCAGACCCTCACTGCCGAGCTTGAAGACGCCATCAACGAAGCACGCAACAACGACGACAACGCC AAGAAGGCCATTGCTGATGCCACCCGTCTTGCTGATGAGCTCCGCACCGAGCAAGAGCACTCCGTCCAGA TCGAGAAGTTCCGCAAGTCTCTGGAAGTACAGATCAAGGACATGCAGGTCCGTCTCGATGAGGCTGAGGC TGCTGCACTCAAGGGAGGAAGGCGCACCATTGAGAAGCTCGAGGCCAGGCTTCGTGACCTCGAGGGAGAA TTGGAAATGGAGGCACGCCGCCGCTCCGACGCCGAGAAGGCCGTCCGTCGCCAGGAACGTCGCGTCAAGG AAATCATCTTCCAGTCCGAGGAGGACCGCAAAATCACAGAACGCATCCAGGAATCATGCGACAAACTCAC CATCAAATGCAAGACACTCAAGAGGCAACTAGAGGAGTCTGAGGAGAACGTAAACCAGAACCTGGCCAAG TACCGCAACGCACAGCGCGACTTGGAAGACTACGAGGAGCGTGTAGAGCTTGCAGAGACACAGGTCAACA AGTACCGAGCCAAGCAACGCAGCCAAGTCACCACATCGACCCGCGTTTCCTCGGGTGGCTACAGTCCGTA CAGTTCTTTTCGGCGCGTCTCTAGGAGTAGCTCAGTACTTAGTGCATTTTCCGCAAGGGGGGACGTCTCC ACCCCATCTCTAAGAGGGGACTCGAATCATGAAATCAACCACCAAGCCAAGAAAGAGTAACACATTCATC GTAACTAAGCAACAGAAACTTCTTCATCTATTTTTCGCGTTGTGTATTCAGTCTTTTTTTTTTCTTTGCA AGGTGGAAGGGATTTTTTTTATAACTTATATGTGGTTTTGAAAAAAATTGTGATTCTCTCACTGAGGCTT GTGAATCATAATAGACATGCATGGTTATGTTCTGTTCATCATGGAAAAGACTGTTGATTCATTTGTTTGT GAATGAATAAACTATTTTGGAGAAATGTGCTTGCTTTTAGCTTGCTCTCCGTACTCCAATGATATGGAGC TTGAGTTGTGTAACTTCATCATCGTTTTTAGATACTTATAGACACAGGAGCATTCGATTCATTTGCGTCT TGTCATCAAATCTATTTAATTTGTAGAAATATATGTGTATTTATATTTTCGAGGAGGAATCCTTTTTTTG TTGTGCACTTTGATAAATTATTGAAAGCTAGAATAATTGGAGGCGACGGAGCCTGGCGTTCCCGTAACAT GTGCATTAGAGAAAGTTTAATTTATTTCATCATATTTATAGTTTACACTGAAGTATATTATCATGATTAT GAGAACTATGTAGTTTTATTAATGAACTTAGATTCGCTACTGATAGTCCGGAAGGATTGCTATAAATAAA ATTTAAGATTGAGTGATAATAAATCTCGTATTTGATTTGAACAATGAGAAAAATATTGCAAAATAATGAA ATGAGAATGTGTGGACTGAACCTGTATTTTTCCTAACGTGTGCGAGTGATGCATTCATTTTTTTTATTTC ACACTTTATTTTCACAACTACTTCGCCAAGAAGGAAAAGTCGTTTGTAAATGTCACGTGCAGGAGGAAAG CGCTTCTTATTGGTGTGATGGGGACAATGCATGGTGCCCAGTTCTGCCTCTGATAGGCTGATGTCAGGTC GGAGCCTTCCAGATATAAAGACTGGCTGCACTCAAAGCCAAGTCATTATAACGTGCAGACCAATCAGCGT CGAGGAATCGACACATACTGATATGCAATGCATATGACTTGTCTCATGAATTATTCATCATGTCATTCAT ATAAGGTATGAAGAGAAGCCATACACACAGTCATGCTGAATGAAGCAAGCAAGTAATTTCTAATCAGCTG TGATTTAATAGTGGATCAACACGGACGATACTATAATTTCCCCATGTCAAGCTCAAGTATCTAAACCTTG ATGAAATGGAAACCGAAAATGATATATTTTTTACTATTCTATCGTGTTAATAACAGTGTTGATAACTATC AAACCATCAATGAAACGTGAAGGAAAAGAGAAAAGAAAGCAGGCATTCATTAAAACCATACATACTCAGT GAAAGAGACGTTTTTAAAGATCATGTTTTTTCTGTCTGATCACTGGCATGATTCGAATGGCACGATCCTC TGATTCTGAATGCATCTTGAGATCATGAAATGAGCGCCATGCATAGCGCACCAATACTAATTTCCTTCTA GTATAGTCATTTCCTTACCTATTTACTCTCTTATAGTCTTTAGCAGCAAATTTTGTTCTCCCTTTCCATA TCGTCAACGTATTGTTCCCTCAATGTCTATTTTAGTCCCCTCACAAAATTATTTTAGACGCCCCTCTATC TTTAGAGCTCATGTCTTATCATTTTCTTTCCTAACAAAATTTCCAAAAATGGCGGAAAACACGATTGAGC TACTGCTAAAGATAGCCACCCGTGTGTGTATATATATAACCTCCTCATATCTAGGTAGTATTGTGTGCAG CATGGGCTTTAATCATGCACTAATGTAGGTGCCGATGTGTGCCAGAGAAAAAAAAACCTTATATGAGGAA AAATACTTTGTTCTACCACACATGCGTCAAAAAGAACTATTAGTGGAACGACATGAAACCGTTAATTTTT GTGATGACTTCTTGAAGTAAAACGAAGCCTCATCTTAACTCTTAATTTTCTCCTCTTTTGTAAACTCATG CTTTCATTGTCAACAGCGAATACAAAAATAAATATGTTTTGAGTTGGTACTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds