Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT106165.1 TSA: Strongylocentrotus purpuratus WHL22.748235.0 mRNA sequence GTTCCAGCCGTACGCCAGGTTTTGGCTGTCTCCATTGATGCAGTTCTTGGCCGGAGGTCAGCAAGGTGGG ATCAATTACATGGTACTGGACATCATGCTGGTCATGTTAGACTGGTCCACTCTAGCTGTTCCAGAGGACA ATCGTTTAGCGAGTGGAGTGTTGAGGTTCCTGATGGAGAACAGCTTCCATGAGAGGAAATCAGTGATGAA GAACAACCTGGAAGTTATCAAGACATTGGTAGAATGCTGGAAAGCGGTCATTGATGTACCTACCAGAGTG ATCTATGAGAGCCTCCAAGACCGATCACCTGACAAGAAAGACAGCGCTGTTGGTATTCATCTTCTTGGGG TGGTCCTAGCCAATAATCTTCATCCTCTGAGTCGCACATGTGATGTGGATGCAGACAGATTTTACTCAGC ACTTGCATCCAACATTGACAATAGATACAAGGCGGTTCATGGGGCGGCTGCTGAGGTCATCGGCATGGCA ATGAAACAGATGGCTGAGGTTGATAAGATCCCTGACAGTCATCTACATGAAGTAACCTACAAGGAGCTGA GTCAACTCCATTTAGGCTCTGGGAAAGAGGTCATCTTTATCACTTGCCTTCATAAGATCCATCTCCATTA TCCAGTCTTCACCGATAGATTCATGAACAAGTTGTTGTTCATGTTGCCTTCCATCCATGGTCAACCAAAG ACTGAATGTCTGCAGATCATCACAGCCAGGATAGAACATATCGACAATGCTTTCATCGAGATGAAGAACA AGAACATCCTGGCACTACTCACACACAAAGATGAGGCTGATCAGCTGACGAGTCTCAAGTTGGTAGATGG AATGCTTCCGAAACTCAAACCGTCTGAGCTTCGCTACCTCCTCCCTGCTGTCAAGGACTTTGTTTCTCAT CCCAGCCCTAGCTGCAGAGATACAATGTATTCCATTCTCATGTGGATCTACGATAACTACAGGGATGAGG ATAAAAGAGAGGGTCAGGATGGTGATGAGGCTCTATCTATCGCCAAGGATACCCTCCTTCAAGGTCTCTC TGATCAGGATAACTATCTCAGGTTGCGAGTGAGTAATTTCTGGAGTCATGAGACTCGTCTACCCAAGGAG ACTCTTGAGCGTCTCATCTCCATGCTAGGATGTATGTACTCCCCCGGTACAGAGAATCGTTACCTTGGTT ACGCCACCAACCTGCTGCTAGAGATGACCTCCAAGAGCCCTGACTTCAAGAGAGAAATCTTTGAACATCC GTTATCAGCTTGCAAATTTGAGGAAGTGCAGATCGACCACTCCTGGCGTCAGCGTCACGCAGCGATATCC ACCCCCAAGTTTGTAGAGACCCAGGTGGGTCAGTCCCAGGGGAGTATTAGGGGATCCCCCTCATCACAGA GTATGACATCATCAGGAATGAGCATGGGTGGAGGAGGACAGCTGAGGGCCACACAGGTTACTCAAAACTT CACTGCCACTCAAGATAATGCTGCTTCCAGTCACAAGAATGGCTACAACTGGTTGACAGGTAGCCAGGAC ACGTTTGCTGATTATTCATCATCTTCCTCAGCGAGTGAATCCTCTTTGCTCTTTACTATGGGGTCTCTAC CGAAGAGAACTGCCCAGGGCTCCAGGGGCACCAAGCAGGAGGCTGGAGCAGGTGGAAGCAGAGACAAAGA GGCCAGGAAAGCACCCTCAGAAGGGGAGAAGGAAGTTCAGCGACTCAAGAGACGTTTCATGAAGGACCAA TCCTCTCAGAGTGCATTCTTTGCTAAACGGGCTACAAGGCAAAAACAACTCAGAGAGGAGGTGCAGAAGA GCCAGAGAGAGCGTAGGTTTGCGCAGGTGACGATGTACCGTCAGTACAGGACAGGGGACCTTCCAGACAT CCAAATTAAACACTCTGACATCATAGCACCACTACAGGCTTTAGCACTGAGAGACTCCACCCTGTCTCGA CTGCTGTTCTCCGCCCTCTTTAGGGGTATCTTGGCCAGGATAGGAGACATGTGCACAGATGGAGAAACAG AGCTTCATGTGAAAGGCATTGAAAGGCATCTCAACCAGATGCTAACCGATTCAAACCAGTTTGATCCGGC TTTCATCAGCTGTATGTTGGAGATCGGCTTCTACCACAGTGAGCAGTTGACCCTTGACCCTGCAGCTATC AGCCAATCATGTCTGACCAGTCGTCAGCTTCTCATCGGTATTCGTGTGTTGGAGGAGGTGTTGATTAAGA AGAGCGGGGACGATGAGAGAAGTAGGAAGAGAGCAAGGACTTCAAGACCAGAGTCCAACCAGGAGATGAG TACATGGATTGAACTAGCTAGGTTGTACAAAGCCATGGGGGAGTTTGATGTTCTACGAGGAATATTTGGC GCCCTCATTAAGACGAAGGATGTGACGCAGGAAGCTATCCAAGCGGAGTCAAGAGGAGACTACGAGTCCG CTCTCGAACTCTACTCAAAGGCAATATCATCCGATTGGGGCCCAGATGGCGTTGCTCGGGAGGAGGAAGA CTTCTGGGATGAGGCTCGTCTTCAGTGCTGCAACCAGCTGACAAAGTGGGATGACATGGAAAGCTTCTCA ACTGATCAGATTGAAGGAAAAGGATCAAATGATTTGTCTCAGATATGGAACGATGATTACCAACAGGAGA TCTACCTGCCATACATGATGCGATCCAAACTCAAGCGCTTGATGGAAGGTTCAGAAGATGATAGTCTCCT AGGCTTCATCGATTCATCTGCCAAGGACCAAGAGAAGAGAGTCATTCTAGAGTCTCGATACACAGAGGAA TTGGCTGCCTTGTCTATTTTGAAAGAAGACTACAATAGAGCGAAATATTACTTGGCAAACAGCACAAGTT CCTTTCTGCAGGAGTGGTCTGGTCTTGGACCTCTGATGCTTACAAGTCGTCTGTCCAAACTCCAAGACAT CCAGAAGCTCACTGAAGCTGAACAGTTCCTACAACTTGCCAACAAACCATTTTCGGAGGGTTTGAAGTCT TCTGCCACCAGACTTGTGTCGGACTGGTCCAGGAATCTACCAGACCCAAAGAGGGATCCAATCAGTGTGT GGGATGACGTCACTCAATACAGATGTCTCTACATGGACAAGCTGTGTAACCTGTTAGGTGACTCAGGAGG AGGAGGAGGAGGAGGAGGAGACTCCATGGAGACAGAAGACCAAAAGTTTGATGACCTTGTGAGGAGGGAG AAGGTTCTCTTGTCTATGAAGATGGCTGATAGTGCTTGCCAACAGGCCAATTTCTGTGTTGCAGCCAAAC ATCTCAAATCAACTCATCGGGGCCTGGTAGAATTTGAGGACCTCCGACCAGCCTGGACTCACAGTTATGT GTCTATGACACAAAGGAAGGCATTGCTTCTTAAGCCATATGAAAGGATCACCTCTCTTCTCAAGGCCTTA GATCATCTCGGCAAGTTACCAGTATCCCATAACTTGGGGAGTGATCTGTTCCTACTCTGCGACCATCGTA TCCTGACCAGTAAGACCTATCAGTCCATGGCTAGCGCTCTACAAGAAGAAAAAGGAGAAATGTTAACCAG ACTCAGTGATGCCGGCAAGCTGGATAAATTGCTTTCTAAAGCTGAATGTCAAGAGAGCAAACCTGAGAAG GTGTGTCAGAGTCTGTTTATGAAGAGCAAGAAATACCTTGATGATGCCGTAGGAACCATCAAACTAGACC CTGCCTCCCATTCATTATCATCATCAGCTAAGAGAGAGGAGCAGAGCATGGCAAAGGCGCACATGGCTCT CGTCAGCTTTTGTGATCAGTTGCTACGGCAACAAGACGATGATGATTGCAACCCTGATTATTTGCCCTTG ATGGAAGCATACCCCTCCACCGTGGTCAACTCAACTCTTCAAGCTATGAATCTGAACTCACCCGAGGCCA GGCAACACTTCCCAAGGCTGCTCCAGCTGGTAGAAAAATATCCTGATACCATGCAAAGTCTTGTAAAAAA GGCTTCCATCATTCCAAGTTGGATGTTCATTGGTTGGATAAGCCAGATGGTAGCTCTTCTTGACAAACCA GAATCTTTAGCTGTCCAGGGCATCCTGAAAGCTATCGCAAAGGATTACCCACAGGCTCTAGTCTACCCAT TCAAGATCAGCAGTGAAGATTTCAAACTTGGAGATAAATCAAAGGAGAAACAGAGGAAGGATGCAGTCAA GGAAATAGAAGACATCTTATCTACAGTACCACTAGTTGAGAATCTTACACTAGCTCTACAGAGACTTACC CATCCTGGATTCATCTTTAAGGATTGGGTCAGTGTAATCAACAGTAAGATGAACAGTAAGAAACGTGATC ATCTTGCCATCAAGGAGGAATACCAGCAGCTTTATCAGCAGCTCTTTGAGTCCGGAGGAAGGCAAGGAGA ACCATCCAGCTCTAGCCAGACAGTAGAACCAGGACCTTACTGGAAGAAATTTGGAAGGGAATGGCAGAAG AGGTTTGATTCATCATTTGGTCAAGATGGAAGTAAGCTTGCAGCAATGGACTACAAGACATGGTCCAAGC TAAGGCAGGACATCTGTGCAAAGATGACTCCAGGAAAAGATGACCCTGGCAATCTCAAGGAGTACTCTCC CTGGTTCACTGCGTTCCAGACTCTAAGGGGAGATGAGCTGGAGATACCTGGTCAGTACGATGGAAGCAAG AAGCCTCTCCCAGCCTACCATGTCAAGATCGCTGGATTCGACGAGACGGTGCTGACACTGTCCTCTCTAC GCAAGCCCAAGTGCATCACGATCCGAGGCAACGATGAGATGGATTACCCATTCCTGGTGAAGGTTGGAGA GGATCTCAGGATGGATCAGAGGATAGAGCAACTCTTCTGCATCATGAACAGCATTCTGGCACAGGATGCG GCTTGCAGTCAACGAGGGCTCACTCTTACTACCTATCAGGTTGTGCCCATGACTCCAAGACTTGGTATTC TAGAGTGGGTAAAGAGAACAACGACCCTGAAGGATTTTATTACCAGATCCATGACTGAAGCTGAGCATAA GGTTTATACATCCAGGACTGCCGGACCAGGAGCTCTCTTCACTACTTGGCTTCAAAAATTCTGCCAAAAT GATGGGAACATTATTAAACTCTTTACTGAAGCATACAAGAAAGCAAATGAGACAGAGACTATAAAAGCCT TCAGAGAGAGAGAAGCAAAACTACCTTGGGACCTTCTTAGACGAGGCTTCATGCAGCTGAGTGCTTCCCC TGAAGCATTCTTGACGTTGAGGGCGCACTTTGCTCGTTCGCATGCTGTCCTGTGTATCTGTCAATACATT CTTGGTATAGGTGATCGACATCTTTCAAACTTCTTGGTCAGTTTAGAGACAGGCGGTATGGTGGGCATTG ACTTTGGTCATTCCTTTGGATCAGCTACCCAGTTCTTGCCGATCCCAGAGCTGATCCCATTCCGTCTGAC CAGACAGATCATCAACCTCATGCTACCCATGAAGATAGATGGCGTCCTACAGAGTACCATGGTTCATACA TTGAGGGCGCTTCGTCAGAATCATGAGCTCTTAGTAAACACGATGGATGTGTTTGTGAAAGAGCCATCTC TCGATTGGAAGTGTTTCGCTGTGAAGCAAGCCGATTACCAGAAGTTGTCTGAAGATAGTCGCGAGGACAT CTCATGGTACCCAAAGAAAAAGATTAAATTTGCAGAGATGAAACTTCAAGGTGTTAACTCAACGTACATC ACCAAGGCAGAGCTAGAGATGGGGCCGCATTCGAAGGACGCGAAGGACGCTCCGTTCTTGAAAGCATTGA AGTCTACATGTGGTGGAAATACAGAGAGCAAACGAGCACAATCTAAGTCAAAAGGACTAAGCGTTGAGGA TCAAGTCGCTTGTCTAATTGATCAAGCCACTGACCCTCGCATTCTTGGGAAAACCTACCAGGGATGGGAG CCATGGGTCTAGGCCTATTGGTCATTCATCAGCGGAACATCAGATGGACTTCATAAGAGCAAGCAAGCGT GGTGTCCGTCTAAATTAAGGACTAAGCGTTGAGGGTCAAGCCACTGACCCTCGTATTCTAGTGAAAACTT GGTTCGGAACAATGGGTCTAGTAGTAATAGTTAAATTAGTCAGTCATCACTGGTACATCAGATGGACTTC ATAAAAGTTCAATTGTTCATGTCATGTTATCATATCATAGTAGGAAGTTAATCATCAAGCCTTATTATCC AAATTGGAGTACTATGGTGTGAGGGGTTTGCCATTACAGTGGATAAAGGATTATTTGAAGGAAAGAAAAC AATATGTTGTTTATAATAATGCAACTTCATTTGAAAAAGAAGTTATATGCGGAGTGCCCCAAGGGTCAAT AATTGGCCCACTGTTGTTTATTCTATATATAAATGATTTGCCAAATGTTTCCTCAACTTTGTCATACATT ATTTTTGCAGACGACACCAATGTCTCTTTAAGCGAGAAGAAACTAGATACTCTTGTCCATAATATGAATA AAGAAATACAAAAGGTTAATATTTGGTACAAAGTGAATGGGTAAAGGATAAACATTGAGAAAACAAATGT TATGCATTTTGCACCATTGAATAAACAATATGATAAGAACTTACTTACTCTTAAATTTGTTGATTCACTA GAGCCCTTAAAACAAGTACATAGTGCCCGCTTTTTGGGAGTTAATATTGATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds