Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030983222.1 PREDICTED: Strongylocentrotus purpuratus nucleoprotein TPR (LOC577828), transcript variant X2, mRNA AAGTTCACGAAACGTGCAGCACCATTCATGCTAGAGTCAAAATGGCGGGTGACTCCGAGAAATTCAAAGA ACTTAATGCTGTATTGAGCGCTGAGGAGTTGAATTCGCTACCTGATGAGGGCAAGAGTAAAATAGAAAAA TTGCTGGCTTCAAATACGACGTCGCTGAACACCTTGAAGACCAGCAATGAACGTCTCAAGATCAATTCAG AGCAACGCTATGAACAACTTGAGAAACAGCTGATTGCAGCACACAAGAAGCTGGAAACAGAGTCCACTCA GTTTCAGGATGCAAAGAAAAAAGTGGAAGATTTTGAGAGCCAGCTGCAGGCAGCCAAGCTGGAGCTGGAA GAGTTCAAGGGTCAAACGGAGGGCACGGCCAGCTCATACCAGGAGCTGGCTAGGGTCAGTCAGCAGCTCG AGGCCGACAAGCAGGACCTCGTCCAGGTGGTTGAGAGGAAGACCAAACAGCTGGACCAGCTACAGAATGA GTGGGATAGCATGTCTCAGAAGCTTGCTACAGCCAATGGTTCCCGGACACAGCTGCAGATGAGGGTGGAC GAGCTAGAAAATGAAGATGTGTCATGGAAGTACCGGGAGAAGCGTCTTCAACAGGAGATCCAGGGCTTGA CTTCACAGAGTGGATACCTTCAGACAGAGCTAGAGAAGAAGACCAGCGAGGTTCTCACACTCAGAAAAGA TAAGTCCAACCAGATCTTGCAGCTACAGAGCCAGTTGAACGATAAGTCTGATGAGTGTAAACACGCCCTG GACGCATCAGAGAACCTGAGGAAAGTGACCCAGGAACAAGCCAAGAGGATTGAAGAGCTTAGCGGACAGG TCAAAGAGGGCCTCAACGTGATCTCTCAAAATGAGGAGCAGTTCCAAGCAGAGGTACAGGCTCAGAACAA GCTCGCTAACCTCTACAAGCGTGCCGGTGATGAGGGAGACTCGCGTGTGAAGGAACTCATCACAGCGGTG GAGGAGCTGAGAGGTCTCCTCAAGCAAGCAACGGAAGCGACCAATGAGATGGAGACCAGAACCAAGGAGC AGGAGAGTAGTCACGCAGTCAAAGAGAAAGAAATGAATGACAAAATCGCTAAACTGCAGAGAGAACTGGA AGACGCCAATGATCTCCTGGCCGCGGCCCGCAAGAGAGGTGTAGCGCCCATGTCCGATGAAGAGCTGAGT AATCTATGCCCGACGGCCGCGGCTGCCAGCTCATTCATCAAGTCAGGCATGACACTCACAGAGATCTACA GCCAGTATGTGAGGACCTCAGACGAGCTGATGATGGAAAAACAGGAGAACCAAAGACTCAATATGTACAT GGACCAGATTCTAGTTGAGATAGAGGAGAAGGCTCCTGTTCTTCAGAAGCAGAGGGAGGACTATGAGCAA GCCTTGGGAACAGTCAGCCAACTTTCATCTAAACTAGAGGCAGCCATGTTGGAGGGTGAGCAGCTGAGAA TCAACGTGGATGATTCCGACCGCAGAGTGAGCCATCTTGGACGAGAGAACATCAGGCTGAAACAGAAGAA TACAGATCTTGGACAACAGGTTCGTGTCCTGGTTCGTGAGGTCTCTGAAGCCAGGGGAGGTCCCATCCAA GCTCCTGATCAGATGGACGTGTCTTCTAGCGATATCTCCAGCTCTTCTCAAGTCATCTCGGATACGCTTG TGTCTTTCAGATCTGTTGAAGAGCTTCAGCAGCAGAACGAACGTTTGCTTGGTGTCGTGAGAGATCTCAG TGAGAAACAGGAGAAAGAAGAATCAGAGACACTACAATCCAAAACTGCTGAGCTAAAGAAGCAGCTTGAG GAATCCATAGAGGAACTGGATGGCATGAGGTCAGCGAGGTCACGACAGACTGAAATGGTAGAGTCCATTG TCAGACAGAGGGACATGTATAGGGTGCTATTAGCACAGACAGGAGCCTCACCCCCACCACTGCCCACATC ACCCTTCACCACACCCACCCAGAAGAGTCTGCACAAGAAGAGCCCTCTAGTGACGACGGCCAGTCAGAAG AGTCCTGGACTCCTGTTGCCTAGCAACCAAGAAACGAAGGTTGCCTTGGACACCCTACAGACAGAGTTTG ATACATACAGGAAGGAGAAGGGAGAAAATGAAAGAATGTTGAATGAGCAGCTGGAGAAATTTAGACAAGA ACTGTCGGATTTCAGAGTGCAGAACACCAAGCTATCATCACAGTTGGACTTTTCAAGTGAGCGTTACAAT GTCTTGCAGTCCAATGTTGATGGATACAAGAAGGAGATATCAGCGCTTGCAGACAAGAATCAGAAGTTCT CCAGCCAGGTTGTAACACTTCAGCAAACTGCCAGTTCAGTCACACAGGACTTGTTGGCCGCGCAGGAGAA GCTGAACAAGGCCGAGGTGGAGACCAAGAACCTGAGGGACGAAAATGGGCTCCTCAAGGAGGTGGAGATT CGTCTGAGCCAGGAGAAGGAGTCTATGCTGAGAGAGCATAAGAACCAAGGACTGCTCCTTACTAACCTAA ATCAGATACAGAATAATCTTGAGCGGTCAGACTTTGAGTCCAAGACGAGGATGACCAATCAGCTTGAGGG AATGGAGCGAGAGCTCTCCTTGGTCAGGAGGAGACTGGACGGTGAGACTGACCAGCATCAAAATGCTCTC AAATCATGGATGGGTAAGGTGCAGGACCTACAGAGGCAGCTGAACTCCGAGCTCACCTCCCATCAGAGAA CCCGCAACGACCTGGCCAAGATGAGGAACGACCTCCAGAACGTCCGACAGCAGGCCGCGACGACTGACGC TCAGCTCGTGGCAGCTCAGGTCAAGCTCGAGTCCTCTATCAAAGAGAAAGATGATGCCATTACAGCCCTA GAGCAGACTGATGGAGGGGTGACCACAGTGAGTGAGACGGAGCTCAAGGAAGTCAACAACAAGCTGAGGA TGTCTGAAAATCAGATCAAGATCCTGAGGGAGCAAATGAAGAAGCTTCAGGAGCAGAGGGCTCACTACCA GTCTATCAGCAAGTCTGTTGAGCAGAACATGAAGGAACAGAACGAAGCGAGCGAGACCTTCAAGACTACC ATGGAAAAGAGGCTGCAAGAAGTAACACAAGAGCATGATGACCTTAGCAAGGAGGTTTCTGAGCTCAGGA AGGATCGTGCGGAGAAGGAGTCAGAGAACAAGGAACTCCATGTAGCCGTCCAGACACAGACTGCAGAGCT GCGTCGTAACCTTGCCAACCTGCAGGAGGAGCTGAAGGAGGCCCTCGCTAGGCAAAAAGAAGCAGAGGCT AAGGAACTCACTGCGAGACAGGACAGTCAAACCCAGGCTAAAGTAGCCAAGGAGATGCAAGATAAGTACG AGAGGGAGTTCCTGCTGCATGCTGCTGACATGAAACAACTGGTTACTGTCAAAGAACAACTTGCTAGCCA TAACAGTAAAATGTCACAGACAGAGGAAGTTGCTAAGAAGGCTCAAGCAGCACTCGATTCATCAGAGGCT TCTTGGACTGAGCAGCTTCGTATTCAGAAGGCAGAGCTAGAGCAGCATGCCCAGAGAAGCAAAGAGCTTG AAGGCCAGAACCAGATGTTACATCAACAGCTAGAAGCATTGGGTAGCAAGATGTTGAAGCAGTCATCACA TGCCCAGGACTTTGCAAACACCAGTATCTCTCTTCGGGAAGAGGACAAATCATCTGACCAGCTCTTAGAA GTCATCAAATTCCTGAGGCGGGAGAAGGAGTTGGCAGAGAGTCAGTTTGAGTTGGCCCAGACGGAGACCC TAAGGTTCAGACACAAGAGCGAACATCTTCAGAACCAGCTGGAGCAAGCACAGAAGAGTCTATCCGGGGA ACGGGAGAGAGCCCAGATTCTCGTGCAGACCACTGCCCAGCACCAAGATTTGATGAAGAAGGTTCAAAGT CTGAATGTTGTCACGGACAGCAACAGACTTCTGAGGGAGGAGAAGGAGAGGGTGGAACAGCAGCTACAGC AGCTGAAGGCTAAGGTCAGTGAGCTAGAGGGAGCCATTCTCCCTCTGCAGGAACAGACCCGTACCATCAC GGCCCAGCGAGATGCCCTGGCAGCCGAGAAGGTCGCCCTTTCCAATGAGGTCAATCGTTGGAAGCAGCGA ACCAATCAGCTCATCGAGAAGTCCAACAGGACAGACCCTGAGGAGTACAAGAAACTGCTGGCTGAGCGCG ATCAGAACAAGAAGCTGCTTTCTGAGAGGTCGGAGGAGATCATGAGGCACAAAGCTGATGTATCCAGGGT GAATTCTCAATTGGGACAACTAAGGACGGAGAATTCTAAACTGAACATGACCATCTCTTCTACACAAACG GAGAGGACAGTTGCAGAAAACAAACTGAAGGCTGAGATTGCTTCTGTGAAGGCCAGTTTTGCTGCCAAGC AGGATGATCTGGTCAACAAGGATAAGACCATCAACCAGGTGAAGAAAATCGGCCGTCGATACAAAGCCCA GTATGAGGAGGTCAAAGGTCAATTGGACAAACTTCAAGAGGAGGTCGATAAGGAGAAGACTGCGACCCCA CAGCCTGACCCCGAGACAGAGGCAAAGGTCAAATCCTTAGAGGAAGAAGTTACAAGACTCAAGGAGCAAA ACACTCAGTTGAAGTCAGCAGAAGAATCAGCCAAGGCTTTCCAGACCCAGCTCACTGAGAAAGAGGAACA TATCGAGAGGTCCAAGAAACTGATGCAGAATGTTAGGCAGAAAATCAATAACCTCAGTGCCGACAAGGAG AAGTCGACGGCCGAGAACAACCGGTTGAAGAGTCAGATGGATGAGCTAAGAGGAGAGATCTCGGCAATCA GCGGTCTCATGAACCAGCAGGAACGCAGCCAAGCCACCCAGAAGACGGAGTACGAAGGGCGCATCCAAGA ACTACAGAGGGAGCTCGAGGATAGTCGACAAACCCTGCAACGAGCCCTTGAGGAGCAACAGCACCAGGAA CAGGTGAGAGAGATGCAGCCCCTGATCGACCAATCAGATCAGACGTTACTCAGTCAACCAGGGACATCGG GAACATCGGACAGGCAGAGTACTTCCAGGGAAGAGGCCCCGCCCACTGCCAACATCCGACCAATGGCATC GCCCGCCTCGTCCGTTGGCCAATCTAAAGGCACCTCCTCTCAGAGCACTGCCAAAGTGACGGCCAGCATC CGCCCCATCGCTGTTACCAGAATACAGACCGGTGTCAACTTCATCACCACCATGACCACGCCCACTACCA TGGTGACGCCCATGGCAACCGTCATGCCCCAGACTGTAGAGGCTCCGGTGGCCGATCAGGGCTCCGAACA AGAAGATTCCAACGACCAGCCATTCCAGCAGGACACCCCAGTCGCCCCCATCGCTCCGGCCACGCCCATC CAGGCTGTCCAGCCCACCCAGCAGACCCCGCCCACTGCACAGACTGCGCCTACTCAGCAGACTGCACCCA TGGCTGTAGCAGAGCGACGGACAACTGACCAGGAACCTCAAGGACAAGAGAGTCACAGGGATGACGATAC AGGACCTTCAGGTGGTCAGACAGGAGGGTCATCGTTGTCACCGGGCAGTGCTGCATCCAAGAGACCAAGG GATGACCCAACAGAAGGGGACACAACCACATCGGAGAGAGAGGGACTGCCGCCTAACGAGAAGAGGCAGA GGGTAGCCCCACAACCGCAAGTCAGCAGGGATGAACCCGAGGAGGAGAAAGAAGATGAGAAAGATGAGAA GACTGAGCAGACGAAAACGGAGACGACGACCACCACTACCACCACCACCCACACCAACGCGGTGCACGAT GTGGAGACGGAGGCAACCCAGGAGGTCGAGGCTGAGACACAGTTTGAGATAGAGACAGCAGCAACGCAAG AAGTGGAATCCCAACCAGTGACAGAGACGAGGGTATTGGAAGTCTCCCCGACCGAGCAGCAGGCCACCGA GGAGAGGCAGGATGAGGAGACGGGAGAGAAAAAGTTAGATGATGTGGTCATCGTTGTCGACAGCGACGAG GATACTGGTGGTCTGGACTCAGGCCAGGACCAGGGTGACCAGCAAGACGAGGATGCCGATGGCGATCTCG AAGGGGAGGAGGAGGAGGAGGATGATGAAGACGATGACGAGGTCGATGATGATGAGGAGGAATTTGAAGG TGATATTGGGGAGGAGGATGGAGAGGAGGACGATGCCTTTGAAGAGGCTCAGGGAGAGGAAGTGGACGTC GAATATGATGAGGATGAAGAAGTGGAAGAAGAAATGGACGATGATGAAGAGGAAGAGGAAGAAGAAATGG AAGATACTGGAGAGGACAATGGAGAGAACATGGAAGATGATATTGTTGAGATTATAGATGACGATGACCA GGGTGCAGAGGTCGCGTCGGAAATGGACACTCACAGCTCCGACCAGCAGAGCGAGGTGCCCCAGCCCATG GAGGCCCAACAGATACTGAGGGTGCCCCCTCCCCAGCTGAGGGTGGTGCCCCCGGAGCCCACCCCAACCA GTAGCAGTCAGGAGTCCACCACCCATGTCCCTCACCTTCAGCGTCACAGCATGAGGACAGAGAGACTTGG CTCTCATGGAAGATTACCTCCCTTCTCATTGCTTCCGTCCGGTGGGGGAATTCCCTTTGAGGATGTGAAT GACGATGGCCAGGTCCCTAGTACTCCAACTCTGTTTGTACCTCACAGAGGAACCGATGGATTCGCAGAGG CTATCAACTCCCCTCTGCTTCCGGTCCGATTCCACTTTGAGGGCGATAGTAGATCACCTGCCCAGGGCCT AGCCCAGCTGGCAACACAAGGAGATCTTGGTATGGATGACACCCGGATCAACCTAATGGTGGGAGAAGAC GAAGCCAGCGGTAGGAGTGTCCCCACTACACCCCTTCAGACCACAGCCCCAGTGAGCCTGCTAGCCTCTG GTATCAGCCCCTCGGAAGGATTATTGGAAGCATCTCAGTCTGTGCCTGCAACGAGGACCAGCATCACACC GCCCCCTAGTGGTGGCGATGAGCCAGACACAGAACCAGGGCAGACCAAGCCAGGTTTTGACCAAGCTGGG AGCTCAGGGGGAGGACAGCCAGAGAGTGGAGCAGCTGGTGAAGATAAAGCAGGTCCAAGCAGTGGTGATG CTGCAGGAGCAGAGGGTTCTAGTGGTACCGGAACGGAAGGTGACGCACGTCCAAAGCCTAAGCGTATTGT CTGGAGCGACGGTTCCTCCCACGCCCCATCGCAGACCCAGTCTGGAGGCCCAAACCCGGAGCAGAGACCC AGGAACGTGGCCCACCGAGGTGGTGGAGCACGGGGGCGTTTATTGCTGCAGCGCAGCAACGTTGCATACA GAGGGCGTGGAAGAGGTGGTCCTCGGATGCAACAATGGAAGTAAAAGAATGTTCTGAAAATGATAGTAAC TGCAAGAAAAGATTTCCTCTTTCACCCTAGCACTTGTAATTTGAGAACTGCAGCCCAACACTGCATTTTC CAACTGCATGTCTCCTGACTTGTTTGAAAAGGCTGTAAAGTTGGTCTCCCCCTCCAAAAAAATAATAATA ATGGATTCTCCTTTATCAAAATTACAACTTAAGTGGTGGACCAGAGTTTCGTGAAGCATATCGTTTTTGT TTCCCTGACTCTAAACCTAATGGACTTTCTTTCTAATCAAAGAGTGTCCGATCATTCAACTAGTATGATT CCATAACTTGAAGGAAAGAGATTTATCGTGTATCAATAGATATGTTCGTGACACCAACACTTCCTTGAGG GAAAAGTGCTTTGTTTTTCAAAATCATCTCTCAACAACACTGTTCGTTGTAAATTTTGAAGTCAACCTTT TTTTGATAGTTATTATTATAAGTATTTGGCGTCACCTGTGCTTGGGAGGCGAAAAGCGAACTGAATCACT GTAAAACTTGGGTCTCTCCTCCCGGTATTACTGATTGGGATGCGCAGGTGGTGACTACACTGGGGTTTCC CCCTACTCTTACATGTATACGAGTAGTGCAGTGGGTTCTTAACGTGCAAACGTGGTGACTCTCCTCCGTT TAAAGTCCTATCTGAGGGACTTAATAGCAAGAGTGATTTATTTAAGCATTCTTCAGCAAAACAATCTATT ATGAAGTGGATTCAAGTGTATGTATTCGGCATGGTAAGAGAGTAGACTGATTGAATATCTCAAGAATAGA GTGTGAGTAAGCTTATCATTAAAACTGCAAGTTAAACATCTAGGTTGTACTTGATTAATCTTTAAATGGA CAAATAGTACACATTTTCAGTCATTCCATTTGGCCGCAGATGATGGATTTTTTCATAATTTCAAAATGGA AGTCCATCCGGCAATACTTTTATCCTATAAGCTTAGGAACATGTATGTGCATGTTATAGCTGAGCCATTA GTGACACAATGATTGAATAAGGCAATATCTGGTCAGGGTAAGGTGTGGAATGGGGGAAATGAGCGAGGGG GGGGGGGGCAAAAGTCTCCCAGGATCAGGTAATGCCAAATACTTAATAATAATGATGATGATAATAACAA GTTATCAATTAAGCCTCTGATATATATTTTCACATTATAATGAGCTTACTTGGGAGGCAACTAATGAAAG GGGGGAGGGG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds