Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT098505.1 TSA: Strongylocentrotus purpuratus WHL22.158659.0 mRNA sequence GGCCATCAAAGCGCTGAAAGAGGAAGGCATACACACCGTTCTTATCAACCCCAACATTGCAACGGTTCAG ACATCTAAAGGCTTGGCTGACAAGGTTTACTTTCTCCCCATAACGCCAGACTATGTGACACAGGTCATAG AGAGTGAGCGACCGGACGGCATCCTCTTGACCTTCGGAGGTCAGACTGGTCTGAACTGCGGGGTCAAGCT CGAGAAGAGCGGTGTCCTGCAACGCTACAACGTCAAGGTCTTGGGAACCCCCGTCAAGTCCATCGAAGAC ACGGAGGACAGGAAGATCTTTGCTGATCGTATGCAGGAGATCGGGGAGCAGGTGGCTCCTAGCTCGGCTG CTTATTCTGTCGATGAGGTCATCGAAGCAGCCAATCACATTGGCTATCCTGTGCTTGTCCGAGCCGCCTA TGCCCTTGGAGGACTGGGGTCAGGGTTCGCCAACAACAACGATGAGCTCCTCATACTGGCCAACGCTGCG TTCGCCCACACCACCCAGGTCCTCGTCGACAAGTCACTGAAAGGATGGAAGGAGGTCGAGTACGAGGTCG TACGAGACGCTTACGACAATTGCATCACCGTTTGCAACATGGAGAACATCGACCCTCTGGGAATCCATAC GGGTGAATCCATCGTGGTAGCACCTAGCCAGACCCTGACCAACATAGAGTACAACATGCTACGGAAGACG GCCATCAAGGTCATCAGACATCTAGGAGTCGTCGGAGAATGCAACATACAGTATGCACTCAACCCAGAGT CACATGAGTTTTTCATCATCGAGGTGAACGCCAGACTGTCCCGCAGCTCTGCCTTGGCCAGTAAGGCTAC AGGCTACCCTCTGGCCTACATTGCTGCCAAGCTGGCCCTGGGGATCCCTCTGCCCAAGCTGAAGAACTCA GTCACGAACTCCACCACGGCTTGCTTCGAGCCTAGCCTGGACTACTGCGTGGTGAAGATCCCTCGCTGGG ACCTCAAGAAGTTCACCAAAGTCAGCAAGAAGATTGGGAGTTCGATGAAGAGCGTTGGCGAGGTGATGGC GGTGGGTAGGAAGTTTGAAGAAGCGTTCCAGAAAGCACTTCGCATGGTGGATGAAAACGTGACAGGATTT GACCATGACAAAGAGAAAGTCTCGGAAGAGGTTCTCAACCTTCCGACCGACGAGCGCATCTTCGTGGTGG CTGCTGCCCTCAAGGCGGGCTACACCATCGACAAGCTTTACGAGCTGACCCGGATCGACCCCTGGTTCCT CCACAAGTTCAACAACATCATCAACTGCACCACGGCCCTAGAGGCATCTCCCATAGAGCCTTCGAAGGAA CTCATACTCCAGGCAAAGAAGTTGGGATTCTCGGATAAGCAGATCTCTAAATGCGTCCTGAGCACTGAGC TAGCAATCCGCACGCTTCGACAGAGCTACGGTCTGAAGCCGTTTGTGAAGCAGATTGACACAGTCGCTGC CGAGTGGCCCGCCAGCACCAACTATCTCTACCTGACCTACAACGGCGACACACACGACCTGGACTTTCCC GGAGGTCACGTGATGGTGATCGGGTCGGGGGTATATCGCATCGGGAGCAGCGTGGAGTTTGATTGGTGCG CCGTGCGCTGCATCACTGAAATGAGAAATCATGGACGCAAGACCATCATGCTCAACTACAACCCTGAGAC GGTGAGCACGGACTACGACATGTGCGATCGGCTCTACTTTGACGAGATCTCCTTCGAGACGGTGATGGAC ATCTACGAGAGCGAGGATCCCACCGGTATCGTCCTCTCCATGGGAGGACAGCTACCCAACAACATCGCCA TGGCTCTGCATAGGCAACAGTGTCGTATTCTGGGTTCCTCCCCTGAGTCGATTGACAACGCGGAGAATCG GTTCAAGTTCTCTCGCATGCTGGATCTGATTGGGCTCAACCAGCCACAGTGGAAGGAACTCACCGACATA CAGGCTGCCAAGGAGTTCTGCCAGAGGGTCGGCTACCCGTGCCTGGTGCGACCGTCGTACGTCTTGAGCG GTGCTGCCATGAATGTGGCCCACACTGCCGACAACCTTGAGGGATACCTCAGCAGCGCTGTAGCGCTCGG CAAGGATCATCCCGTCGTTATCTCAAAGTTCATTCAGGAAGCTAAGGAAATTGATGTGGACGCTGTTGCT CAGGATGGTAAGATCGTTGCCATAGCGATCTCAGAGCACGTGGAGAATGCCGGAGTGCACTCTGGAGACG CCACCCTGGTGACCCCTCCGCAGGATCTGAACCAAGAGACGATCGACAAGATAACGGCCATCACGGCGGC CATCGGAGCAAGTCTAGAGGTCAACGGCCCATACAATCTACAGCTCATCGCAAAGGACAATCAACTGAAG GTGATAGAATGCAACCTGAGAGTTTCCCGCTCCTTCCCCTTCGTCTCCAAGACCTTGGACGTTGACCTGA TCGCCTTGGCAACAAAGATCATCTTGGGTATTCCGGTGGAAGCCCTCGGCAAGCTGAATGGCACAGGCAG GGTGGGGGTCAAGGTCCCGCAGTTCTCCTTCTCCCGTCTGGCCGGTGCGGACATGCTCCTGGGTGTCGAG ATGGCGAGCACAGGCGAGGTGGCGTGCTTCGGGGAAGACCGGTTTGAAGCTTACATGAAGGCCATGCTCA GCACAGGATTCCGTATCCCCAAGAATAACATCCTCCTTTCGATAGGAAGCTACAAGGGGAAAATGGAACT TCTTCCTGCCGTGAGAACACTTGCTGCGATGAACTACAGCCTGTATGCCAGCATAGGTACAGCTGACTTC TACAATGAACATGGCATCAAGATCAAGCCAGTCGATTGGCCTTTTGAAGAGGAGACTCCCGAGCAGAAGA AAGCCAACGGTGACGCCCCTTTGAGCATGATGGACTACCTCTCGGAGAAGCACTTTGACATGGTCATCAA CCTGCCGATGAGAAACAGCGGAGCTCGTAGAGCCTCGTCGTTCATCACCAGGGGATACCGGACACGACGC ATGGCCATTGATAAAGAGATTCCGCTTATCACGGACATCAAGAAAGCTAAGATGTTCATTGAGGCTTTGC GTCGCATTGGAGGTGCTCCACGCATGAAGACCCACATCGACTGTCTCACCTCCAACCGGACGATCCGTCT TCCGGGTCTCATCGACGTCCACGTGCATCTCCGAGAGCCGGGAGCCACCCACAAGGAGGACTTTGCCTCT GGTACGGCCGCAGCCCTGGCTGGAGGAATCACGATGGTTGGTGCCATGCCTAACACGACGCCGTCCATCA CTGACCAGTCCTCCTTCCAACTTGTCAAGAAGCTTGCTCAACTCGGTGCGCGATGTGACTACGCCATCTA TGTTGGAGCAGGACCGGATAACTTCAACGAGCTCCCGATCATCGGTAACGCCGCCATGGGGATGAAGATG TACCTCAACAAGACATTCACATCCCTCAGATTGGACAGTGTATCGACTTGGATTGAGCATCTTCAAAACT GGCCTCGTCACCTGCCTCTGGTAGCCCATGCTGAGGGAAGAACAACCGCAGCTATCCTCTTCATTGCTCA GTCTCTCAATAGACCCATTCACATCGCGCATGTCGCCAGGAGAGAGGAGATTGAGTGCATCAGGATGGCC AAGGAATCCGGCATGCAGGTCACCTGCGAGGTCACACCTCATCACCTGTTCCTGACCGAGGATGACCTTG ATGACATAGGTCATGCCAGGGGTCAGGTCAAGCCTTGTCTGGTGACTGCTGATGACCAGCAAGCATTATG GGATAACATGGACATCATTGATTGCTTTGCGACCGACCATGCCCCCCATACGGTAGAAGAGAAGAACAGT GAGAACCCTCCCCCAGGCTTCCCAGGTCTTGAGACCATGCTACCTCTCTTACTGACGGCCGTCAATGAGG GCAGGCTCACCATTGAGGACATAGTCCTCCGTCTCTACACGAACCCCCGGAAGATCTTCAGCCTCCCAGA GCAGAAGGAGACCTACATCGAGGTGGACCTGGACCACGTCTGGACCATCCCTGAGGCCATGACCCACACC AAGAGCAAGTGGACCCCGTTTGCAGGTCGCAAGGTCAAAGGGGCGGTGCGCAGGGTCGTGCTGAGAGGAG AGCTGGCCTACGTGGACGGGCAGGTGGTGGTGGAACCGGGCTTTGGTAAGGATTTACGTACCATGCTGGA GGGCGTGCCGACGCCCGCACCCTTGTCGGTCCAGGTGGCCCTTAACCCCCAGGTGTTGGGACAGCCCTCC TCCCGACCTACCTCACGCCCCTCCTCGCCCCACAGGCTGGGCAAAGAGGGTGAGACACGCTTCCTGCTGC CCGCCAGGATCCATCGCCTGTCGGAGTCTGGTGATCCCAACCTGATGTCGCCCCCTACAAACCCCCCTCA GCCCACTAGGACCTTCTTTTCCTCGCCCCAGCAGGGCCTCATGTCCCCCTTCGGGTATGGGGATGCACCC CCTCCTCTCACCCCTGTACCCAGTGTGGCTACCGGTGGGGTCTCATTGATGGGGAAACACATCCTCAGTG CGGCACAGATGACCAAAGAACAGCTTCATCAGCTATTCAACGTGGCCCACAACATGAGAATGAATGTCCA GAAAGAGAAGAGCATGGATTATATACTAAAGGGTAAGGTTGTATCTCTGATGTTCTACGAGGCAAGCACT AGGACCTCCTGCTCCTTCTTGGCAGCCATGCAGCGTCTCGGAGGTAGCGTGATCAACTTCAACGAGAGTA CCTCGTCTCACAAGAAGGGAGAATCAATGTCAGATACCGTGCAGATGATGGCCAGCTATGCCGATGTGAT CGTCCTACGTCACCCTGAGCCCGGGGCTGTCGAGGCGGCCTCTAAGGCCTGTCGCAAGCCCATCATCAAT GCCGGTGATGGGGTTGGAGAGCATCCTACCCAAGCCCTGCTGGATGTCTTCACCATAAGAGAGGAGATCG GTACCGTCAATGGAATGACGATCACAATGGTCGGAGATCTGAAGCACGGTCGCACCGTCCATTCTTTGGC TAGACTTCTGACCCTCTATCGGGTCAATCTGCGCTACGTCTCGCCGGACAGTCTCAAGATGCCGGCTAAG GTCAGAGAGTATGTCCAGAGCAGAGGCATCCCACAGGAGGAATTTAGCAGCATTGAAGAGGCTTTGCCAG AAACAGATGTGTTATACATGACCAGGATCCAGAGAGAAAGATTTGAAAACGTTGAAGACTACGACAAGGT CTCTGGTCAATTCATCTTGACCCCTCACACGATGACCAAAGCCAAGGCAAAGATGGTGGTCCTTCACCCT CTTCCCAGGGTTAATGAAATCAGTCCTGCTGTTGATACTGACCCTCGTGCAGCGTACTTCAGGCAAGCGG AATGTGGCATGTACGTCAGGATGGCTCTCCTGGCCATGGTACTCGGCAAAGCATAGATCACACATGGTCT TTGACAGTGTCAACAAAGTCTTTTGCAGATCGATATGGTCTTTGACAGCTTCAGTAGGGTCTTGTGACAG GGTCAGTGGGTCTATGACAGTGTCTACATAGAGTTTTACAGTATCTTTTTTTTTTTTTTACAGTACAGGC AAACCTGTCTTATAATGGTCACCTTTATTATGTCCTAGGGAAAAAAATAATTTCATGTGTTGCAGAACCT GTATAGCGAGGCCACCTGTCTATAGTGGTCAGTTTGCATTTTCCCCTTGGGTAGCCTCAATAGGCAGGTT TGACTGTATCTATGTTGCCTTTGACAATGTCAGTATGGTTTTGGGCAAGGTATTAGTTGCTTTTTGACAG TAGCTGTATGGCCTTGCCAAGTAGCATCGCTGTTTTTGGCAGTGTCAATGTTTTCTTTGACAATGTCATC TGTTTGGAGCCAGCAGGGCATTAACTCATGTATTTTAACACTAATTTACAGTCCTTCTTGATCTGTGCAG ACAATGTAGCCTTTGGTATTGTAATTGATGTCTTTGACAGTGTCAATATCGTCATTTGGCATCGTCAGTG AAGCCTTTGGCAGTATCATTGTTGTCATTGGCAGTGAAAATGTGGCCAAAGACAGTGTCTGTATGGTCTT CGGAGTGTCAATATGGCTATTGGCAGTGTATGTATGGTCCTTTGATAGTTCAAATAAACATTCTGCATGC ATGTCCATGTATTCCAAATCATTCAGTATTTTTTTTTGTCAATCCTTTTTTTAGCTTCTTGAAGAAGAAT CCGGTCAGTAGCATTCATGTTGTTCATGTTAAAAACAAGTCTGTTTTCCAGAAATGTGTAACATTTACAA CGGTTAGTATTTGATACTTAAATATCTACTAAACATAATTGCATTTCATCATATGTGTAACATTTACAAC GGTTAGTATTAGATACTTGTTCTATATTTCAGAAAATCAACAATATCTGCTAAACATAATTGCAGGTCAT CATTTGTTGTTTAGCGGGCACAACAGGCAATCAGGTATTCCATGTGTAATGAATGTTGACTCTCTGAGAG TTCTGGTAAAGTTCATGACTATGCCTAATTACACCTTGTTTAAATCATGTTAAATTGACAATCTTAAATC TGTAAAACAAAGGGCAGCTGTGTTATATTTCTTAATGCATTTTTCAAATTAGAAGTACTCTAAAACCAAA ATAAAATGGAACCTGGTGATATTGTGGATTTTAAAAGTTCCTTGTTAATCTTGACAACATGTATATTTTT TGCAAGTTTCATGGGAAGAACAGTTGCTGGCTTTTTACAGAGCAAGTGAAAAAAAATACAATAAAACATG TTTCATTGAGTGTGTTTATACGTTATCGCACAAACCAAGAGAAATCTTTGATTTTTCACTCCATTCCTAA GTTTTTAATACACCTTGAAAAGTGCTACGATTATTGTAAGCAATGTTCTTTGGAGCATACTTCCTTGGAG CATACTTCTTTGGTATTCTTTCTTTGAGACAATATTATGTCTTATGATGTACGAATCATTCTTATGGGTG ATTGGTCTTTTCCAAGTACTATCTATCTCATCATCCATTATGTTACACGACTCAGGGGGTATTCGAGATG AGACCAAATTCATTCTCTTATTCGTTAGATGGGCCAAAGTGATGCATTGAATACTTAATAGAAGGATGCC GAGTGAATTTTTCTGTGATACATTCACTGGAGAATTTGCCTTCAACTTTTTCATTTTGTTTTTTTTTCAG TTTTCTGTATTGTATGAGGTTGTGAGAAAAGCACAATATTTGTAATGGATTAAGAGAACTCGAGACAAAT AACAAAGTGCATTTATGAAATAAAGTGGAATAGATGTTACGAATATTTACTTTATTATTGGCTGAAATTG AAATAGTCATTGTTCCCTGTTACTGTATTTGAACGATGACACCAAACGATATCAGACACAAGGAAAATTA TAAATATTGACTAGAACTTATTTGTGAGTCGTTTTTTTGTACATAAATACCATTCATCAAGATGGACTGA ATTTCCTTTTTACACTAGATAGTAAAGTAGAATCACAAGTTAAAATGAAATATTGTGTTTATGAATTTGT TCGTGAAATGTAATGAATCTGTATATCATGATGTCTGTAAGTTTCTCATTTGGTGAAACACTGCCTTGAA GCACTTGCTAGAAGTCAGATGGTGCCTTTTTCACTAAGTTGACAACTTTGTGGCATCTATATTTTGTTCT CTTGGCTGATTATGTTCATGGAAATATAAAAAAATTGAAATAAAAATTTATTTAGAAAATTACATGTAAA AAAGATGCATGGCTTTGTTGAACGTACTGTAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds