Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011678751.2 PREDICTED: Strongylocentrotus purpuratus neurexin-4 (LOC576560), transcript variant X2, mRNA TTCTTGTTTTATTTCATCAGGTCTCCCATCCATGGATATATCCTCGATGCCACGCAGCTACGACAGGCTG ATGGGTTGCATCGCTAACGTCCAATTCAGCTGGACCTCCTCCAGCTCCACCCCTGCTGCCGCCAACCCCA TCCAGGTCACCACCAGCCCCCCTCAAGGCACCAACCAGGCCCCCACTGACCCCCCTGCCACCGCCGACAC CAACCCCCCTGCCGACACCAACCCCCCTGCCCCTGACACCACCGCCCTCCCTGACATTCAGCCACCGAGC TCAAATGACACCAGCGGGAACGTGACGGCTTCGGGGACCAGTGAGACGAGCGGGTCGCTACCTACTGAAG CCGCTGCGACAGAGAGGAGTGGATCAACAGTCGGCAGCGGCGCTGAAGCAACTCCGACGGAAGCAGGAAA TGATGTGCCCATAAGTTACAGAGTTCGCGTTGAGGATGGGTGTATCAATGGTTGTGAGACTGTCAACCCC TGTCAGCATGGAGAGTGCATCAATGACTACTCATCCCTGTCCTGCAACTGCTTCATGAGTGGCTACGAAG GAGAGAGATGTGAACATGAAGGTGCTACCCCAGTTACTTTCGGAGGCTTCCAGTATCTCACCTACACACT GTATCTGGGAAACCAAGAAACTTACAGTGCTCAAGACCTAATCAGTATGAAGTTTAAGATCAATCCAACC CACAAATCAGCAGTCTTGTACTATGCAGTGGGAGCTCTACCAACCCAGACCTACCTAGCTGTGTTCATCC AGGCTGGCAAGCTCTCTGTTAATATCAAATACAGCACACAGGACATCTTGGAGTTCTTGGAACTTGGTGT CGTCAATGATAATGTCTGGCACTCCGTCTCGGTCGCTCAGAATGAGAGGGTCGTCACGGTGACCTTTGAC AACTCCACCATGAACCACACCATCACAGGAAGCAACACTGTTTTCACCTTTGACCCTGTCAGTCATATCG GAGGTGGAGAGGGTCTGGATGGATATCCAGGTCTTCCTGTAAGCACCAACGTTGTCGGATGCCTGAAGGA GGTCTATATCAATCGTTTTGACGTGACCAGCGCCCTCCACGCCCAGTCCTCCACCAGGGTCTTCTTCATG GGCGGAGCCCCGTCTTTTGAGTGCCGCGACATCGACATCGTCCCGGTGACCTTCCCGACCCCAGAATCCT ACATTCATCTGGAGGGGTGGCATACATCTGACTTGAGCCTAAGATTTGCATTCAGGACAGCTAACGCCTC TGCTCTGATCATGACAGCTCATGTCTATATGAATGACACACACCAAGGAAGGCTAACCTTGGATCTTGAG GATGGTGTTCTGATGGTGAAGCTAGCGACCGATCCTCACATTGCTCTCACTCTCGATTACTCCACATCCG TTGGAGCAAGGCTACACGATGGTTTATGGCATGAAGTCAATCTTACAATGGCAAAGAGCAAAGCAGTGTT GGAGCTGGATGGGGAGTCTGCATCGTTCATGTTCACAGAGACTCTAACACCGCGCGGAACAGTATACTTA GGAGGTTGGAACGGCAAGGGATTCGAGGGATGCATGCAGAACATCTACATGCAGGAGGAGATGCTGGTCC CTACCGAGGTCTATGGGACCCTGGTCATGAGGGGGGTGACCCTGGATGGTTGCCCCCTCCCCGGGAACCC CTGCGTGGCCGGCGAGGTTGAGTGCGCCAATGGAGGCACCTGTGTGGAGCAGGACGGGAGACCGGTGTGC CTCTGCACCGACCCCAAGTTCACCGGCGTCCGTTGCCAATTTTACACCTACAAGAGTTCCTGCGCAGAGT ATTTCTATTCAGGCGACACTGCATCTGGAGCTAAGCTCATTGATATTGACGGTGCTGGACCATTTGAACC GTTTTACATCAACTGTGATTTCAGTCAAGGAACAACAGCTTTTGTGATCCCTCACAATCTTCAGCCCGAG ACGCTGGTCCGTTACGCTGAACTCCCTCACGTTGAGTTTGACCTAGAGTACCAGTTCATGACCAATGCCA TGCTCCAGTTCCTAGTCGGAAGGTCCACGGGCTGCTCTCAACATTTTAACTACCATTGCTTCGAAGCACC CCTGAGGCTAGGCAGCGGCACTATCATAACCACTGTATCGGGCAAGCAAGTGCAAAGAAATGCCATGCCT TTCATAGGAGACTGCGACAAGGGACGCTCAACGTGGATGAGAGATAGTGGTTACATCACAAACATGTTCT ATCTACCGATCACCAAGCTGAGTTTGAAACCGTACATTCACACTGGAGAGGATTTCACCAAGGGAACTCT GACTGTTGGCCCACTCCGATGTGAAAAGACACTGGGCTACACTCATCCATACACCGTGTCTCTGTTGAAC CAAGAGCAGTTTCTGCCCATGGAGGGATGGCACTCCGGAATGTTCTCCTTCAGCTTCCGTACCCACGACC TCAACTCTGTACTCTTCCACCAGAGGGCAACGTGGAGGACGCACAACTTCCTCATGGCATCTATCACCGG ACCAAACACCCTGAAGATGGAGCTCCACATGAACCATGACATCCAGACACACACCATCACCACCGAGAGG ATGATGACCGATGGTCAATGGCATACGATGACCCTTCAGAAGACCACCCATGAGATCCATGTGACCATTG ACTTTGACCGCTACTCTCTCACCCTGCCGGTCGGTCAGAAGATGGGCCCATTCCATGGGCAGATGCATCT CGGTGGCAGTGGAGTTCTTCCATCAGGTTTCCATGGGATGAGTGGCTGTCTTGCAGGAGTGCTCATCAAT GGCAAATATCAATTCATCTATGATTACTACAATGAGTATACGAACGAGTACATGAAGCCTGGCTGCAGCA GTGCATGTGATAAACAACCCTGTCAGAATGGAGGAGAGTGCCTGGATGAATGGGGTTCATTCATGTGTAA ATGTACTCATCCCTCATTGCTTGGACAGACCTGTGCAACCGACAAGAGGATGGACACCCTCACCTTCCAA ATGGACTCCGCCTTCGTGAACCTTGACCCCAAGGACACTGCCGTCCTGACCTCCGACTTCCATCTTGGGT TCCGTACCTTCCAGACCGATGCCCTCCTGTTCTACGCCCACGACCAGGTCGGAAACTTTGTCCAGCTGGA CGTTGAGGGAGGAGACTCCCTGGTGATGAAATTCAACAAGGGCAAGGAAGTGGTGCAGATTGTGTCTAGG ATGAATGCCTCTGCTTTAAATGATGGTTCATGGATCGATGTTTCTGTTCTACGAGATGAAAGATCAATCA AACTGGTCATCGATGAGCAATACTCCTCCTCCATGGATGGAAATGCAACACTCTTGACAGAGAATGATGG AACACCTTTCACAGGTGTACCAGCTACCGTCAGACCGCTGCTGCCATTCAGTGGGCCTTCAGAATCCTTT GTTAAGATCTACGTCGGTGGAGTACCAGAGGGTACCACAACTGTCCCCACCCTGCAGGGCTGCTTCAGGG GGCTCGTCATCAACGGAGAAGGATTCAACCTGCAGGAGAAGGCTGAGAATGAGGAGGGTATTTCAGCGAC GTGTACAGATAACTGTCTTCCAAACAACCCCTGTATGAATGGGGGCTCATGCTCTGAGAAATGGGACTCT TTTGAATGCAATTGTACAACTACCTCATACACCGGCAAGACTTGTACTGAAGATGTTGGTGCGACCTTCA AAGATACCACCGCCCTCCTGTACCCCCTTATTGCTACTCCTGACCAGCCAGCGGACGTTCTGGAGACAGA TGATCTCCAGTTTGGATTCAGTACAACCTCCCCAGATGGAACCATCTTCTATGTTAGGAACAACTTTGCT GAAAGCGCTGAACAGAATTACATCAGTGTCAGCTTGCAGGGGGGACACCTCAAATTTGTCTTCAGCTTTG GCGCAGAATTAGTTGAGGTTGAGAAAACTGGACCATACAATGATGGATTCCGTCATGGAGTGGTTGTGAA GAGATTTGGAAGGAGGATCTTGGTTGATGTCGATAACCAAGGGGAGGATTACGTCACCCTCTTGTCAGCA CCACGCCCGTTCCAGGGCAGGGCAGCCATCTTGGTAGGAGGTGTAGAAAACAACATGAGTATGTTCAGTT CTGGTGGATATGAGGGGTGCATCTCAAGCTTATACTATAACCACAAGACCCCTCTTGATCTAGACATCAA TGGTTTAGGTATGAAGAGGGCAGAGTGTGCTGCATTCAAAGCTGTCTCAACCACCAGCACCATGACCACA GAGATGCCTTCAAATCCATTGCTCAATAAGGTGATGACCATGCCTCCATGGAATGTGGCCAGGGCCAAAG GTCAGGAGGTCGAGTCAGAAGGACCGGTAGAGAAACCCCGGGATATCCTTCTCATGGTCATCATAGCTGT ATTTGTAGTTGCCTTCCTCATCCTCATTGTTTGCATCATCGTCACGGCGATAAGTATAAAGAACAGCAAT AATCAGCAAGCAGCGGCAGCAGCTGCTAAAGATGGGGAGCCTAAAGAAATGGACGGCTTACTGGAAGAGG GGAGGGGTGGCAGCTCAGGGCGAAGTGGGAAAGGAGGCAACCCCTCTCCCGGCAAACGACCCCCCTCAGC TGAGATAAGCATTAAAGAACTAGAATGGGACCCGCAGATTGAGAAATACATACGCCAGCCCGAACTTGAG TGGGACAACACCTCGTACAGCAGCCCTGACACGCCCCTAGCTGTCACCCCTGATGGGCCCTCCCAGACCC CATCGGAGGCACCAAGCACCCCTGGGACCCCCCGATCCATGCCCAATAGCCCCTCCCCAACCCTACTCCA GCTAGCTGCTAATCATAGTCCGCACTTGTATAACACTAGCTTTCTAGACTACTCAACTAACAATTCAGAT CTTGCCAATCTGAGGCACATAAAGGATACACCTGTATGAAAATTAAAAAAAATCATCTGAAAATTAGCAG AGTGTTGCATGTATATTCTTATATTAAAATAAGAACAAATTATGACAATACTTTATTCTTGAGATGATTT CATTAATGTTACTCAGTTAGTTAAAAACTGAGGTTCATTTTGTGTATAACATTGATATTCAGGTAAAGAT ATACAATTATATTGTGATGCGTCTATGTAGGAATCTATTGACATAGGACAGTCATTGTTGTATAATGATG TGGCATTATGATGTAAAAGTTCGCATTAATATTTGGTCATTCTCAAAAACTATGCAGAGATCTAACAATT AAATTATACTGAGATTTTATAATACAAATAGCTAAAAAAAGATGCAAGTTTTATCACGTTAGTTGGGCTG AACTTGATGATGTTTTGCATATGAAAATATTAGTTTAAAATATTAAATATTAAAGGGGTTGATAAAGTCT GTTTGAAACCGTTTTGTTCAAAACATATTTTGTTCCTTTCATGTAATATATTGTGGAATTTGAATCATTT GATGACTTTAATTCTTTGTCTTATAGCATTTGCAATATATGTTTTTGTTTAAGAAAGTTAAGTATGTTCT GGAAATCTGTATGATAAATAAATTTTAAAATATTTCATAGTTAAATGGATGAAAATATAACTTCATAACT TATTTCCTATTTTCAGGATATATGCAATGCTGTTGTTTATTCAATCAGCAAATAGAAGGGACAAAAGAAT TAAGTTAACATCAAATTTTAATCTTTTCCCACCAGCCAATCAACTGAGAAAATCAGCTTGTGGAGAAAAT TTCAAGCTCGAGTTTTCGAACCTCCACCGTCACTTATAAACCTATTTCCTGCTGCTGCTGCTGTTGAAGA TGGCAATAGAACTTTATAGTAGGATTAAGGAAAAGTCCTGGTAACAGAACTATCTGTAGATCTCATTCTA GTAGAGAATAATGATAACGTTTTTGAAATTGTCTTGTATCATGTTTTGACAGCCGAATGGCTTTGATCGT TTGAATTCCTCATGCTGTGTGTAAATACACCAACAAGACCAACACCAAGGCCCCGTTTCACACAACTCTT TATCAGTAAAAGTTACAGTGACTGTTATAAGCTACTGAAATCGTGGCATTTGATTGGCTGAGAGCAAATT TGTCATAGGAATTCAGCATTTGTTACTGATAACAAGTTTTGTGAAACAGGGTCCAGACTGACAATAGACC AAATAAAAATTCCATAACCCAGAAGGCCAAGATTGATGTTGTCATTGATCGGTCGATTTAGAGTCGGTTT GTTAGTGGAACTTGGTTTTTTACTCTCATAAAACTTGTACCAAAAAGCTAAAACACTGCATTGTGTCTGC TTGGAGCCAGATGGGGGTTAACTCTGTGTGACCGTATATAAGTTACCGCCTTTCTGATCCCAAGCAGACA ATTTCACATATACCAAGAGGCCTTATTGAATAGAAACTGAACAAATGATATTCCACGTTGCCAAAGTGGG TATCACTTGTCTTGTATGTTTTTATCGTAGTCGTATGTAGAAGTCCAGATGTTTTACAAGATCGTTGTAA AAAAATAAGTGTTTTTGTAAAGGATGTTTATCTGTGTACAGCTCCTGTATTCAAATAGTTGATGAAAAAT GAAAGTTTGCTGGGATGCGTATGTTCTTACTTCTTTGGGAGACATTTCTATACAATTTTGAAGGAAATCA TTTCGATCTTCCCATTCTACATAAATTTTTGTATAGAATTTTCAATTCATTCTTGATGAAAGAGTGTGAT ATTTTCTTGGAGCTTTGATAGTAATCTCCTTTTGTGAAGATGGGAGATATTGAGGTAAAGAAAAAAAGAG GGAGACGTTTTCACAATTATTTTGAATAACATGGGCAAACTTTATTTGGTTTTCGATTGATTGCATTGAT AGAATCAAAATGACTAATTACTGTATTGAAAAGTATGACAAATATGTGCAAACTTTATTTTACAGTTGGA ATAATCATTCCTATCTAGTTTGATGAACTCTGAAATACCGCCTCACAACTCAGGATATACAAATATTGTA TTTTCTGTATGGAGTTTTAGTTTAGGAGTTAAGAAATGTTAAGTGAAAGAATTTTAAAAATTGATCTGAG AAGTTTAGTAGTTTTTTGCTGAGTTTGTGATGGTATATATGGGATTTATCGGGGATTTAATGATGCGTCT GAACTAAGTTTACAGTCACTTTCTTGTCTTATAACTGTTCATTTCTACTTCGGTTTCAAACTGAGAAATA ATGTAAGGTCTTGCATTTAAAGTGACAAGTTAATGACGAAAATTATTCTTATAGCTGTCAATAAACTGTA AGAGTATGCAATGTGGTGATACAGCAATCTCGATAATTTATGTTTATTTTACTTTTACTGTAACCTCGTG ATCAAACACATATATATTTGGGAATGTGACAATATATGAATCATTTTGATGTTTTTGTTTTTATCACATT GGTAATACGTGTTCCATAATATCACTTTAGATTTCAGGTAGAGCCATATATTTTGTATTCTGAAAATTGT GTGACTTTTGAAATATTTTTCATACATCCATTGTGAGTATTTACTTTATTTATGTTTATACAATTTCGAT GATTTCTATTGACATATATATTAATTTATTTATAGTTTTCCATCTCCCTTTGGTTGAAACGTTTTTGTTT TGTATATATTTGCGTTTATGTAGAGGTTTTATGACAATTGTGATAACGGTCAATATCTTGCCAAATGTAT GAATATCATAGGTATTTAGGAGGAATGTCAGAACATTATATACAAAATGAAATCAAAGGCCTATTCCATA TCATAGTTCATTATTTGTTTTCCAATTAACTTTGAATGTTAGTAAAGTGACCAGGAATCCCCAAAATTTG GCAAAGCACTTTATGCTTGTGTGGGCTCCTCAGATCGGTGCATGATCTGCAAGAGATTTGCCTGGAAATA AGGAAAGCATTTTGATTGTGGAAAACAGCATTCCATTGCCAGACTAAAAATGGATCCTGTTCAACGTTAA AGTTTTTAAATGGTGATTGAAAACTTCCACTTTTTAACAGCATCGTCAAAGTATTCAGATTATCCACCAA ATTAACAGAAAAATATTTTTCCAACTCTCTATCAGGCAGTATTTCAAGAGTATTTATTCCAGAAGGCTTC CATATTTTGAAAAAAACTGTCGGTTGTGCTATGTATTTCTGTGATTATTTTTTTTCTTGTATTGTGGCAC CATGCAACCAAAAATAATAATCAGTGTTAAATACGTGGGAATATCTGTTGTAATGTTTCAATCAAATGCT CACTAAATCATATGTGATCATTTATAATGGCATTTTGCAGTTTTTGTGTGTCATAACTTTTACTAACCAA CCAAATGGAAGATCATTGTTCAAGTCATAATTTTTTTTTACATGACCCATTTTATTAGGAAAAATGAAGA ATCTGTGTCATTTATATGATTTATTTTGTAGAAGTGATTTAGTATGTATGCCACGTAATGATAAGGTAGT GCAATTAACGATTCGGTGTATTTGTTGTATTTATTATTTTGATGTCTGTTAGAAAATAACATTCCTTTAT TTGCAATTTACTTAATGTAGAATAAGTCTAGAAGATTTGAGTCACGTCTTGCATTTGTGATTTCTTATTC ATGTTGACCAAGCCATTTTTATATCAGTGGATGTTTTTTCAGAAGATTTTATTCAGACCCTCCTCGCGTG TTTCAGTGTTTAATACATACATATTTTCTTATGACTCTTAAGACACCACGTTCTTGAAAATTAGACTTCA GATATGGGATTTGTAATTGAAACAAAGGAAATGCAATGGATTTCTTTTTAGGGTGGGGGAGCTGAGAGAA ATAGTTTGATAAAGTTGCCCCAACCCTTTATCTTGGAGTTAATAAACGCGGAACAATTTGTTGCCGAAGT ATATAGAATGTCTGGCCACCGCTTGACTATATTATATAGAATCATAAAGACTGAAATTTTTTGTCTGGGC ACGAACTGAGAGGGCGCTTTTTTGTTTATAGATGATTTCTGCATGTTTAATTATGAAGACAGTTGAAAAA GGAGTGTCTATATGTATGTTTCCACCGTAACTGTTTGAGTAAATTGTCTTTCACCTGACTTTTGCAGTTT ACTACTATACTGTTGAAACAATGAAATAAAAAATGTAGCATTTTTCCAGCATCTGATGGGAAATGAATAA ATCATGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds