Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT099643.1 TSA: Strongylocentrotus purpuratus WHL22.151633.6 mRNA sequence AGATAGAGCGCCGAGGTCGCTACGAAGGGCTGAGAGAGAAAAATAGCGGTGATGTCCCCATAGTTGAAAG GGCTCCCCCTTACGAGACAGAAGGAGACATTGGAATGGTCGAACCCTCGGCAAGTAAAGTCACCTGCGAA CAAACGACTCATCTTCCCCTAGCCGATCGTGACACGGCTGGCTAGCACCAGCGCGCACCCCGCGACATAA CACGCACGGCGGCGTGAAAAGAAACAATTCTCTCTAAACACTGATGCTCCATTGATCACAAAAAGACGGT AACGATTTGACACTCTGTGGTGAATTTGCGACAAACACTATCTCATGGCCGGCCTTCGAATCCTACCCAA CGCGGAAACCCTGTGACAATAATTCGGCCAGCTTTTTTTATTCCAGCAGTCCCGGGACTTTATACCTCGA CGCTTCGTCCGACCGGCCGACGACGACGGGCTCCGACAACGTGAGAAACTTGCTCATATCCCTTGTCATC ACCGAGATCATCTCCATCTAAAAGGACATGTTCATCGGCACCTGCCTGAGCTAAGCGGTGTTTACTAGTT TATCTAAATCTACGGTTACAAATCTCTACGGCTTCATGACAGGATTGACGAGATAATTAAGTCGCGTCTT CCTGTTCTCGTCAACGAACGAACCCCAGGGATTCTTATATTTTGCTTACAACTTACTTTTTTCTTCATCT GCTTGCGGAAGCCCAACCTAGCACCACGCGACTTCACGGCGAAGGTTACGGCGTCGACATGGCGCAGGAA CGTTCTGATTTGATCGCCCACCGGCCGGGTTTCAGCACGGCCTCCGTCGGGGGCAACAGCTCGTTCTCCC CGGCGACACGGCTATCGCATACCCCTACAACCACGGACTTCCAACCGCCGTACTTTCCTCCCCCTTACAA CATTCCCCAGCCTCAATCCCAGTTGGATTTTCACCACTCGCATGTGAATGCTGACCCTTACTCTCACCTG AATCCCATACATCCCCAGCCGCAACATCAATATCAGCTCCACCCGCAACAGCGGACCCAGCACATGCTCG GCCGCCGGGAGGAAGCCGACCATCTACACCTCCAGCACCCTGGTATGCAGCTACCATCGGCTAGGGACTA TTCAGCCGTGCGTCGCCCCGATGTTTTAGTACACGGAGGACCACACGGACTCGCTCCGGAACAAACCGAT CTCATGCTACACCATCCCACGGGTCTTCATCCTATGGACGATGGCTCGATACCCACGGATGAACGTTTCT CAAGGTTAGCCCAGGGAGACTATTTCACGAATATGAGGGCGCTTTTCCCGGCCAAGGGTGCACATGACGA CTCAGCAAATTATATCCATGGTGAGCATCATCATTCCGTCATCAGAAAAGGCATCAGACAGAAGAACGAA AACGCGAAAGATGGTCTGGTCTCTAACGTCACATCGCCAAACGATGTCTTCTGTTCAGTTCCGGGTCGTC TCTCCCTGCTCAGCTCAACGTCCAAATACAAGGTCACCGTAGCGGAAGTACAACGTCGTTTATCGCCGCC AGAATGTCTCAACGCGTCACTGTTAGGCGGCGTCCTAAGGAGAGCAAAATCAAAGAATGGTGGTCGATAT CTCCGGGAGAGGCTGGAGAAGATCGGCCTTAATTTACCGGCAGGAAGGCGAAAAGCTGCAAACGTCACCT TATTTACCTCACTAGTAGAAGGCGAGGCGATACATTTAGCTCGCGATTTCGGTTACGTGTGCGAGACAGA ATTCCCTGCCCGGCAGGTCTCTGAGTACGTCCTGAGACAACACTCCGACCCTTCGGAGATTCAGACACGA AGACAAATGGTGCTAGCGGCCAAACAAATCACAAAAGAGCTGCAGGACGTGCTATGCCAGGATCGTACAC CCATCGGTAACACACGACCGCAGCCCATCCTTGAGCCGTCCATTCAGCGCTGTCTCACGCACTTTAGCCT CATCTCACACGGCTTCGGCACGCCGGCCCTGTCGGCCTCCTTTGCCACCCTGCAGAACGTCCTGACCGAG ATGCTTAAGTACATTGAGAAGGCGTTTCCCAACAGTATTCCACCACACCCCACCGCACCCAGCTCCGGTG GCAACGTCGTCAACAAAATGGACGGCAGCCCATCGAAAGGCGACGATAAAAACGACAATCGCGGCAAGGA CATTGTATGAGGAAGGATTTTCCGTCGAACAAAAAAAGAAATCGCGAAGAGGCCAATCGCTTCCCAGACG TGGACACATTTTAGAAACAATTTGGACACCTATGTCACGTGACCTGGAGTGGCGCACAGGAGCTGACGGT GCCAAAGATGTTCAAAGGACTATCTTCTCTTTGCAGCAATGTGCTGAGTGGTTTTTACAACAGTTTCGGA GGCAGGGTTGAATACATTTTACATTTAACAAAATTAAGAAGGAAAATTAAATGTGTTTATATATAGTGTA TGAAAGATGTCAGAGAAATTTGTTTGATGGATTTTTTGAAAAAGATAGAAGATTGTTGCTGTTGTTTTTC ATTTTTGGTTGACTGCCCACCCTCCCTGTACAAAGGTTATTTGATATGGTATAATGTACATAGATGTCAT TCCTATGGTGGTCGTTTAATGGCTTGCCTATGGTAGTAAATACAAAGACAATCGCGGACAAGTGCAAATC TGAAGATTTAAGGGGGCGGAAGGAGGTCGCAGTTTTATTTGCCTGTGGTGTTCCGTGTTAGCATGCGTTG CGCTAGCGGGCTTAAGCCCTTCTTCACCGTAGCTCCATTCGACCATGTGCTGATCTTACGTTGTTCATGG ACTCTGAGAATGTACGGGTTAATTGGAAAGCTACAGCACACTGCTAGCTGAATTCGCTTAAACAACTCAA CCCTGGAAACCTGAACCAGGATATCGACAATCAAACAAGGTAGTTTAAAGTTTTATTTTCATATTGTGCT TATTTCACGTCCAGATACCCAACCCACCGAGAGCTTTATGCTCACAAACGTCTACCCAAAGATCAAATAG AAAAAGAACTTTGTTACAAGTGCTTTATTATGATTACTGTAACAATTAAATAGGTGTAAACACGATCGCA TTGACTTTCGATAAATCAACTCAAAGCAATCGTAGAATCCATGCCCACCATCAGTTAATATTCGAAGATT GATATGACGTATAACGTAACCCTAATGAATTTTATTAGGGTAGTGAAATTGCATTTGAGTTGATTTCTCG AAAAATCTTAGCGATTTTGTTTAAACAGATATATGATACAATTCATTACTGAGAATAATCCGTGAATCTG TGACATGAAAACACGCTCGGGTAAATTGTTAGTACAAACCAGTGGTTGCCCACCTATTTATGTGCCAAAA AAAGAAAGTATTGTATTCGTGTTATATGACAGGATTGTGTTTACATTGTTTATGAAATTATCAAACTATT TTGCAGAAGCGTGACAATCATTTTGCTCTTATATAAGCATTTCAAAGTTGTATTCACCGGGAACAGGAAA TACCATGCTATGGATTTTATCATGAAGAGTAGATAATTATGTCGAAGTAGTGTGAATTTATATTGTTATA ATGAACGAGGTATACACAAGAAGAGAAAAAACAGACGCGAAATCAAAAACCATTTGATTAACGAGAAGAC AATAACAGCAAGTTGGACTCAAAGATGTGTCTTTTTAAATAATGTTATGTTAACTTCAGCTCTTGACAAT AAACTGGCGACAATCATTTTTATTTTACTGGTGTAGAAATGTACATAATTTTCAGATTGCTATGGGAACA TTGCTCCCACGTTTAGTGTTAGGTATCAGTGGAAATAACAACGTGTTTTTTTAAGTAACAGTCGTGCAAA GCGTGTGTTTCAATAACCTGTTTGTGTTAACAAAATGCGACGAGACCGATTTTTTCTTTCTTTCCCTCCT ACGAATTCCTCTTTGTCTAAAGACGGTCAAATTCGTTATTCAACAAGGACCACTGGCCACATGAAGGGCA CGTAATGGTACCTTTAAATTTGTCTATTTTCAGGGTATGCAAAGCCTTGGAATTTCTGAGAGGTACAAAT TCTTATCCAACTCTATAATTCTCAAAGTTCACCAATTATTGTGGAACTTGTAATCGCATGCTAATGATCT ATTTTTCTTGGTTAGAAGTGGATAAGGATAAAGTTCATATGTGGGGGAAACACACTTGTTGGAAGAAGGT TTTGTCGTGTCGTATCGTTCGTAAAATTGTGAATGTGTGAACGCAACCATACTACAGAGAACTGTGTTTC GTCCCCTAGTACGATGTATTGCCGATGCTCCTACTTTTCATAATTCTAAAGTTAATCATCTTCATAACTT CGATAAAATATTATCAGGTTATGAGATGATATGGATATTTTACTTGGTCTATGCAATATGATACAATCGA GAAATGATTTTGGCAACGTAGTATAAGTGCCACCGAATATTCAACCATTATGCTATCTGAATAGGCTTAC ACATTTAACCGTCCTGTAAAAGAATAGACTGACCTTTCATATATCTTCCAAATACAAATTCAAATGACAT GAAATGCAGGAAGCATGTAATCCTTTCCAATAGAAGTGAGTGACGTAACAAATTACTACAAATTTGTAAC CAAAGAGGGCAGTCAATTTTAATTTTATTTCATTTTTAATCACAACAACATACAGTTTGTGTTCTTGTTT TATGTCGTGTTCGTTCTGTTTGTGTTTTATATCTAGTCCAGTGTCTGTTTCTATGGCTGGACAATAATAT AAACAAACATTGTTTGATAGACAGAACTTTGTATAAATAATTACGGATGAAATGGTTGTTCTACTGGTGA ATGGTCTTGTTAACTGCCAAAGTTTTTATCATTGAATGCAAATCGAGAGGACTGTATCGAATCATCCCAC CGTATGAATGTGTCGAGTCACGTGACTTCCAAAAATGGCGGCCGGTGTATCGCAGTATTTATATCATAAA CGCCATACTACAAGAAATTACAAAACAAATCAGTCCTGAACATTCACGATAATATACTTCTTCATTTATT TAATGAACCGTCATTTATTTAGCCAGTAATTGTGTTTTTGAAATCCCATAGGTGGAAAATAATAAGCGTT TTAGCATACGTACGTGTATTTTAGTTTAAAAAAGCTACGTTTAATGTTTTGTTATTACCCATGTTCTTAA GGCAATTATTTAAGGTCCTAACCACCGACCAAGAACATTAGGTGATCATTCGAATTCTCAATGGTTGTTT ATGTTTACCTCCATTTGAATAATGTTTTATCATAGGAAATCAGGTGGCGACTCACAAATAACTGACCGTA TAAATATATATGTCTTGCCTTTAAGTATGGACTCCGACGAAAACCTTTATTTTTTTTTGCAATTCAATTT ATTCCTTTAAAATAATTTTTAAAGATATTTTCTCAAGCCATGAAGTTTCAACCACCTAGGATTTTAGATT GAATCAGATGACGGGTACACACCTAGTCATATCATACGAATGTTCTTGATTTCTCATTTTCTATTTACAA TGTACAGTGAGAATGTTCTAAAGATAAATGGACGTAGTGAATTTAGAAAAAAGGACAAAAAATACATTTT TGCAGATTTGTACGGTATGAGATTACGTGTTGATGAGAGAGAAAATGTTTTTACGTGTAGATTATTCATA TGTTGTTCTCCATTTATTGAGTTGGATTTTTTTTTCTCAATAAAAAAAAAGAACTGTAGTTGCCATAAAG CAGCATAGAGTTCACACTTTGCGCTTGCTTCAAGCATTATTTTTCATTTTCCGCACATAGCCAAAGTCGC AACTTCCATATTCAGGTCTAATTCGGGACAAAAGATTTTCTTAAATCAAGTGATAGGAATTTCCCCATTT TCAACATAAGAATAATCAAAACGATATCATTTTGCACTCATCTATGCTCTCACTTTAGTCTTATTTCATT TCTAGTTCTACATGTGGTCAACTCCTTTTGAAGGTGTTATTAATTTAAGGTGGTACATTTTTAAAAGTTT ATGTTTTAATATGATCTGTGCCAACTGAATGCTCGATGTCTGCACAAGCATATGCACAACAACGCCAAGA CATATTCCACAAAGCTTAATGTCATTTCTCAGATATTTGTTATTTATAAATCAACCCAAAACGTTTTTAA AGCAAGCGTTGTGGAGAGACGATAAATAACATACAAATCTAAAATTGTTTTTAATCCATTACTTAATGAT AAAATGCCACGAAATAATTATATATCGGTGCATGAGCATTGCGCCATTGTTTGCCTGCCTCACCTTGTGT TTGCATGTACTTTAAACAATGCAAAATAAGTTCAATCGATCAAATTGTCTTTCGCATATGATTTCATCAG CAATGTGGATCAGAAATTCTCTTTTGAAACAAAATAATAATGGGAAGGTTTTATGAATTTATTTCAACTA TTTGTCACGTTGATCTTTTATTTTTCTTCTTGGTTGAAATAAGTATTGCGTTTTACCAACTGCAATAGTT TGTTCTTTTATGCGCAAACTATTACATCAACCTAATCAGTATTCTACCTATTGTAGTGATTCGATGGTCT TATTTTGCTGATCCCTCCACGAGCAATGAAATGTATTGAATGATCAAGGACTGTGGCGGTATCAGCGAAA TAATTTGAATGCGTCTGCTTTGTGTTCTGCTAATTTTAATAATGCTCTTTCATTTTGTTGGTTAACTTAA TATCTTCGATTGTTTGTGCTCTCAAGTTGTATGTCTCTAAATTTGAAGAAAAAAATGGTGGAGTTGATCA TATTTGGGGGTCATCATTGAGTTTGCTTTTGTGATGTCGGAGAGACACTCTGGTGAATTTGGTGATCGCC CGCCTGACTCTGTTGTATTCAGATGGCCATATGTGAGGTGCATCATTATTATTGTGTTGAGCGACAGATA TGTCTATTAGTTTGTAAACATTTTCTGTAGATTATTATGAGTTGAAACCTATCTGAGGAAAGATATCGTA AATAAAAGTTGAAAACCGAAATATCTCAGAGATTCCATTGCGTTTATTTCGATAGGGAATTGTTTTCCAA AAATGAATTGATGTGTATGTGTGACCGATGCTGAGGTTGTATATAGGGAATGTGTATGCGGATAGGAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds