Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011682216.2 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC587762 (LOC587762), transcript variant X1, mRNA CACCTCGAGCTCAGACTGGGTATAGTAGGTATACTTTATCGTTGCCCGCAAAGTATTCTATAGCTCAATA AAAGGCACACTGAAAAATCGCACACACCACGTCCCGCAACGCCAACAGAGCACGCGGTGAAAGAAAAAAA GATCGCAAGACTTCGATGAAATTTTGCTCTGAAACCGATGACGCTGAGCTTTACAAGAACCCAAGAACCC TCATTTATGACGTCACGTCTTCAACGATTGCGTTTGTGTGCATGACTGACCAGACGTGAAGCCGACGTAC ACATGATACACCGCAACCAAACCAATGTTCCCATCACTCATCGGGTCGAACGAACCACAATGAACGGGTC ATCGGACAAACTGCTCCATGAGCCACATAGACACCGTGTGGTTGACTCCAGGTCCGTCGGTTCCGACGAA CCGTTGGACCTCAGCAGACCGCTGGATTTGTCTAAGAAGAGCAGTAAGCCTGTTCCACCTGCAGCACCAC AGCATTTCGTGTCTAACGGAACACCTCGTCATTTCCAACCTGGGGTACAACCGATTAACATTCACAACAA CATAAATGGAGTCAACGGAGCCAACGTGCCTCCACTGCGATCGACAAAGTATCCTCTACAGAGGGGTCTG GCCTATGTTCAACCTCGGAAAGGATCCCTCTCTAGAAATGGAGGAATCCTAGAGGTAGGGATACCTGATC CGCCAGCCAACAAGAGCTCGCCGCAGAAAGTCGTTGGCGCTGGCCAGCAACTCATGATGAACTATGCCGC CATGCAGCAACGTGTTCGTACAGAGGCAGGAAACATTGCAGCCTTGCAAGCTCAGGCTACAAACGCAGCA CAGGAAGCCGTAAAGCAAGCTATGGCCCGACATGCTGCCGCTTCCGCGGCGGCCAAGGCTAAGAAGGAGA TGCCTACAGCAGGGATGCCTCCTGGTGTTGTCATCCAGCGGTCTCATAACCCAATGTTTGACGCTCATAG GAAGAGACTGAACACAGGTCGCATGGCCTCTGTGAAACCTGTACAACGAAAATTGACCCCTTCTGATATT CGGGAACTTGCCATGGAGAGGCAACTCGCTCAGTTATCAGCAATGCATTCTGAGCAAGATCTTCTTCGCG CCTATCGTCAAATGATGTCATCGCCAAAAGCAAGTTCTGCTGTTTTTGCCAAACAAACCCACATTCGGCC ACAGACTGACAAGTCATCAAAGACTTCAGCGACTCATAAACCATCATTGCAGAAACCATCTTTGCAGAAA CCACTTCCAGGAGCAACGGACGAACGCACCGGGAGAGGTTATGAAGCCAAGCATACACACTATAGTCCTC AGCAGCAAAGGATCATTGACTCTCACATCGCTGCAAGTAAACAAAATGGGTTTGCAGCGCAGGTACGAGC AAGGGAGCAGGCGATGGTCAAGCAACAGCAAGAGTTGATCACGCGTCAACAACGTCAGCTTATAAAGGAA GTAAATAACAATCGTCGACTCCAGGAATTCGCGAAGAACGAACGTGATCGTAAAGCAATGGTGGCTGAGT TTAACAATAAACATTTAACCAGCCGAGGAAAGATGCTCGAAGAAGAAGCTTTGGCAAGGAAGCACGTCGG TCAGGCGGCCATTCCTGCCCTACCAAGTACAGACTATTTAGAGGCTATGGCTGCTTATAACGCGGCAAGG ACCGGTCAAAATCAAAAACGTACCATCAGAAGTGTGTCGCACACGATGTCTCCGCCACCAACGCATGGTT TGTCGTCACCACAGTGTATCAAGAAACCTTCACCATCTGTTCCTCCTGAAGTTCGCAGTGCAGTCCATAG CAGTTCTCCACATGCAGAAGTCATCGCCGCATCAAAGGTGTACCCACCGATCAAACGCCCTTCTTCTAGC CCACATGAAGAAGTTGTTCCGAGGAAAATCAGATCAGCATCTTCTGATACCCGATCCAAGAATATGTTCG TCAACGCTATTGCTGAAGTCCAGCGCAATGTCGCTGCTCAACAGATGCTTTACAATACCTATAAAGGTAT GACTAATAAGAAACTGTCCAGTGTACCTGTTAGGGAACGTCTCCTCATAGCCCGGATGTCAGATCGTGAT CGCCATGATCTCATGGTTGCGCAGATGATGGAGGAACAGGCAATGAGATCACTAAAGTCTAATTCTAGGA CAGGAAATAAGAGTGTGTTGAGCAATATCGCCTCATCACCAGAAGGCGAAATGATCCATGCTGCAAGAAA AGCTCATCTGAACAGGACCAAATCCTTTGACAAGCCTACTGCAAATCATAACGTTCCAAGTTCGTCGCAA AATAGATTGCCTAAGAGTGTTATTTCGCCAGGGCCAAGGGAAAACGAAGAATCAACCGCTGACTATTTAA CTCAACCTAATCTCATTAAGCAACGTAGTGAAACAGCAGGACACCCTCCGATGAAACGAACCAGTCGCCT ACCGTCCTACGACGATGCCATTGCTGCCCAGAGATCACTTCCATCGGGAGAAACGAACGAGAAAGTTACG CCTGATATGATGTCTTCTGTTGCTCGTCAGTTGGTCACGTCAAGTAAGGATTGGTTCAAGAGTTATTTTT CTCGAGAAATAGAACTTCAAGGAAATGACATCCCTCAGCAGGGTAAAGCAGAGAATCGCATAATGACTGG AGACGGCCATTCATTATCGAAAGACATATCCGCAGGTAAACAGGTGGCAACGTCGCCTGTAATAGAATCG GCAAGGCAACCAAAGACGGAACAGAAGACCCTGAAGGAATCATCAGAACATGATAAAGAAACGAATAGCT TACCAGTCAATGAAGTAAGGAAGTCGTCTCCTACACTTCCTCCGACTCCACCTATCTTGGATGCCCTCGG CTTAGGTGGGCGCATTCCACCTGGAGAGAATAGCCAGAAGGACCCGGTTGTAAAATCTGCCATTGATGTC AAGAGGTCCTTTGGGAAACCTTTCTCTGATTTCTACCTGACACAGTCATTGGGTCAATCGGAGGTGACGC CGATATCCCCAAAACCCAAGCCGACCCGCAAGGTGAAGACCTTGTCGCCTGAGAAACCAGTCGAGGACCT TGAGAAAAGTATAAAGGTGGCTGAAGAGCAGCAAAAGAACTCAGATGCAACGACTGAAGCCTCAAAGGGC AGTGAAGGAAGCCATGAGGTGAATGATCTGATGCAGGCTGATACAGCATCCCTCGGAAGCAAGGAACGTG CTTTACAGCGGGCCATTATACGATTCAACGTTCCGGAGAGACAAATCTCAGGAGGCGACCAAGCGACAGA GGAGATTCCAGTTCCAGTTGACACTAATAAACCTATCTCCCGTTTGAAACTGGTGCAGAGGCGGAGAAGA CGAAAGCTGAGTAAGTTCAGAAAGCGTATACGTGGTCAGCGAACTCTAACAAATGTTCCTGTTCCTCAAA CAGGGAGGAAGCGAGGGCGCCCACGGCGATCGTCCTTGCCACCAACGGCAGACATGGCGGCTCTGATGAG AACAAAATTCCAGGATTTCATTCCACAAGTCTTAGAAAGACGAACGAGGAATTCTGGATCAGGTCGTGTA AGGAACTATCGTTCGATGTACGATGCCCGGAATATTCGCTACGAACTGGAGATCGAGAAGGAGCGTGCCA AGGTGATGGAGAGACGACGTAGACTTCGAGAGTTCAACAGCGCGGAGAATGCCAGTGCGACAGAAACGGA TGATACGGCCCATGACGAAGACTGCGCACCCCAGTTGAATAGACCTCAGGGCGAAGACTACGCACCCCAG GTGAATAGACCCCATGACGAAGACTACGCACCGCAGGTGAATAGACCCCAGGGTGAAGACTACGTACCCC TGGTGAAGCGAACCCATGACGAAGACCACGTGCCACAGGTGAAGAGACCCCAGGGAGAAGACTACGCACC CCAGGTGAAGAGAAAGCGTGGTCGCCCGCGAACGAAGCCGAGAGACGAAAACAGTTCGAAGACACCAAAG CAAAGCACCGAACCAGGGGAAGACGCAACACCTGAAGCGAGCCCTGAGAAGGAATCAGTGGAAAGCCCTT CGAAACCATTACGAGTCGTTCTAGACCAGAACACACCTAATCACATCAAGATCAAGTTTGTAAATCTGCA TAGTATGAGCACCAACGAGGATCATAAAGAGGTGGAGGAGGGAGCACCACCCCAGCCGCGTCGGCGGGGC CGGGGAAGACCGCGCAAATCCGTTGGGAAGTGTAAGAGCAAGACCAAAAATCTAGGCCCACCCAAGTCAC CGGAACCACCCAAACTTGAGATCATGTCACCGTGCGAAGACAAAGAAAATGAAAGCGACTACGAGGACTT TGTACAGGATCCCGACTATGATGTGATCAACCCGGAACTGACGTTGCCAGAGTACGCCCGGGTTATCAGG CCAGACCCTCCACAAGAGATGAAGCGGTTTCCTCTCAACAAGAAACTGGGTGAAACATATTTACATAGAG CAGCATCCCAAGGAAATATGGAGATCATTTCGTATTGCATCGACTACCGAGTCATTGACGTAAACGCCCG CGATAACGCGGGTTATACGGCTCTGCATGATAGCTGTGTCGAAGGCCACATCGACATCGCTCGGCATCTT CTCAGCCATGGCGCCGACGTCAATGCCAGCGCGGCAGATGGTACAAGACCCATCCATGATGCAGTTGATA ACGATCGGGTACAGCTAGTCAGACTCCTGCTTGCATATGGCGCTGATCCTTTTCTGGCTACAAACACAGG ACGTAGGGTCACCAAGTTAGCTCTGACGAAGAGCAGCGAAATGAAAACCCTGCTGTTTGGGTATTTGCAA GACGTCAATGGTGACAGGTCGAAATTTGAAGATGCCCCTCTACACGCTCTTGATTACCAATGGAGCTTCA ATGGATCGTGCAGTGCATTTGATACGAATACCAGTTCCGAGACCTACACCTTCGCTGATGTCCCCGGTCC CGATGAGAACAAGAAGATCGAGAGTGGTGAAGAAGACGAAGGAGTCTTCTTCGAGATCAGTGATAAACCC ATTCTACCATCCTACAATATTCGCATGGAGAATGATGATAAATTCCGAAACTGGCTCCTGCTTTCTGACG TCACAGAACGACTGTCCCTAACAAAAGAAGAACTTCTGGACTCCAATCCCGATCTCGAGCCTGTCTCACT TCCAGCGTGTCAGTTTCACCAGGCTGCTCAAGAATCCCAAGTCACGAACTCGACCCAGGTGGGGCGTGGA GAGGATGACGTCAATGTTAACCCGGAAGTGAAAGGTGAAGAGGTGAAGTTACTCGAGCTGAATGATAACC TCAGGAGCGTTCTGGGTAGCGAAGTGAAGTACGTCAGGTGATAGAGACAGAACCTCATTTAGCGTCCTAC AAGAGGCTTGTCAAAGGAGAACGGTGTTAAAGAGGATGCACATTCATGACATGAAAGACATGTTTGTACA ACCATAGCAACATGCCAGGAAGGCAAACAATAAACAGAACCCGACTCGGCATCCTAAAAGAGACTTTGTC CGAGGGGGGATTTGCAAAATGAAAACGCATGAAGTGAAATAACTTCAATTGAAGCGACATGCCAGGGAGA CACAGCATTGTTCTGACGCAATGAATGTTTGTAAAATTTGAGCTACCTGTAATCGCTCTGATTGGTTCCA TATGCCCTTTTATGGAACTGGAAAGTAAATTAATGTACATTGCCAAACTACTCATATACGGAAGCGAGAT CGGTGCTAATTATTTGAATTATTCATGTGCGGTAGCCTGTTGCTAATACTCGTTTATGTCTTTTAAACGG TCATACCGTACGATTTAATCTTGATACCTGCTGTTAGACCATGTAAATAGTCATGTATGGTGAATTTATT GGCGTAGCCGTTAGGCAATAACGAGACAGAGACTACAAATGACTACAAAACCTGCCCTGATAATGTGTTA TACATTGTGATATCAGTCATGGGAGAATCGTTTTTCTTTCAAAAGTAGAAACAAACTCACATCACACCGA GACCAGATTGAGTATTTCATTCAACCCTATTGTTCTCGGTATATTGTAAGATGTGAATTTCATTTCGTCA TTATAATGTATACCGCGTTTGCACTCTTTCATTCCCCGAAGAAGTTCGTCTTTCATGTAAGGCAAGATTG TTGCTTCCTAAACGTATCTTAGCTGCCTGTGTAAATAGTATGGTGTCCGATGAGAACAAATAACTGGATT TTTTTTCTTCTTCTGTCTTTCTCTAAAGACAAAAATGTAAATGGCACGGCAGTCGTTTCTCCTTTTCATT TGTATTTCATTAGACCATACGATGTTTAGACGTGTTATATGTACATGTACATGTATTGTTATATATTTTC GAAAAAAAAGTACTTTTATTAGCTCAGTTTGGGGTTCACAGTTTGTTCTTTTACAAATGCAATAAGTCAG GTTTTAATATGATTATATTGTACAACTCTGTCATGACCACTTGAAATGTATTTGTACTACATAAATCTAA GGTTGTTATATACTGTACATACATTGATTGACTTTGCATGTGCATATAACGTGACTTACGTGATAAGTAC TGTATAAAACAATTACTAGTTTCAACTTTGCGTAAAAGTTAACTGTTTGCCAACATGTTTTCCTTGTTTG TTCGTTCGTTTATATTACAGAGCAATATTAGTTTGTCTTTGATGTATTTTTCCTTGTAGGAAACCATTGA GTTCGTTCTACATAGGATGTTTAGTTTTGATAACCGAGTATTCACCAATGAGGTGAAATCTATATTACAT TTGAAAGAATGCAACGTTCCGTATCTTTCATTCTGTTATTTTTGTTCCTTGTAAAAACATTTATAGTTTG TTAGTTTATATGCTTATTTCCACATTGGAACGTTTTTAAAGTTATATTATTTTGTAGATGATAATACATT GTTCTGACAATGACGTATCCAAAACGGCTAAAAAGGGGAAAGCGTACCCTTCCACCCCTCCCCCACCCCT CCCCCCCCCCCTTCATCTTCCTCCTCCCAGACGGGATGCGGAATGTATCTGGGCAGCCCCTTAGAGATGG AATTTGTTTAAACCCATTGCAAGTGCATATGGGAGGGGGTGTACCCGCCGTCTTCCAATCACCTGGATAC GCCATAATATTAAATATGTTGACACGTTGTTGTTATTTTTGTTTTCTAGTTGACACATCGTTGTTGTTTT TGTTTTCTAGTCGGATGTAAATAATCTTAATGGTCGTAGTTGTTAAGTCTTATTTATTTGCGTCTTCCTT ATACAATCCGTTTATGTCAATAAATGGTTGACTGTTTCCAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds