Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT101890.1 TSA: Strongylocentrotus purpuratus WHL22.43820.0 mRNA sequence CAACTCCGGCCCATCGGCCCCAAACTTTTGAATGAGTGAGTCATCGGATCGGTACGTTATTGTTTGCACA TGTACCGTACTTCTTGTGTACAAAATTAAGGCAGCAATCCGTAAGCAGCCAATCAAATCGCTTGCTTTTA GGATTAGCGGTGAGTTTGAACGAGGAAAACATGGCCACCATCGATGCGTGCGAAGAAAGGATTTGTAGGA TCTGACAAGCTGATTATTCCAAAGCAGCATATCGAGGAGTTCCTGAACCCTAACTTATTTCGATATCGAC ATCATTTCAAGAAGATTAATGGAGACAATGGCAGCGCCCATGGAAGTAACAGTGTCTCAACTGAGTTGCA GTACGACATTCAGTACGTCGACCATGAATGATACTACAAGACAGAGTTCATTGACTGCTGTAGATGTTAG GTTTTGTTTGATAGGTACTGAGCTTAGACATCATACACAGCTTCATAATGCATTACAAAAAATGAAGATG CCCTACGTGTTCTCAGACACGGGGCAAGAGTACAACATTGAAGATGACCAGGCAGAGACTGTGTTTGTCA TGGCTGAGTTTGAAGGAGAAATCTTTGATGCGCTGTCGAGTAATAGCCGACACATTCTAGGCACCACAGC AATATTACAGAGTGCAGCTACAGATGAGCATCTCCCCTGTGTGACGAGGCCACTGTTCTGCAGACACATG GACAAGCTCGTTATCTGCTTCACAGGATTCTTAGACAAGGCTGAAATCAAGAGACTAGTCGTACTGGTTC ACAACATGGCTGGTAGCATCCGCAAAGACTACGGCCCTCGGGTCACCCACCTCGTGGCCAACTCGTCCAA CAGCGAGAAGTACAGGGTTGCTGTGAGTTTAGGCACACCCATCATGACCAAAGAATGGATCCAGGCTACC TGGGATAACCGTCACAAACAAGAATGCGGGGCAACATCAGAAGAAATGCTGAAGTATAAGATGCTTCCAT TTTTCGGATGTACCTTGGGTTTTGTAGGCTTCACACAAGATGATCAGAGACACATGGAAGAAATCACACA AACACAAGGTGGCAATATAGAGACCATTGCCAATGATTCATGTACACATATAGTCGTTGATGAGAACACC GTAGCTGAACAAGTCTTGGATTATCCAAGCAAGATTAAGGTTGTCAAACAAGAGTGGTTCTGGGCCAGCA TTCAAATGGACGCAAGAGCAGATGAAATTCTCTATACTTTCAAAATGCCGTCCACCCCTGCATCCCTCCA TGGCACACCCACCCTCATGTTCAGCGGATCCAAGTCCAGTCGCAAACGCCGTCTCAAGGACAACATCGCC GCTCTCAGCTCCAACACCGACCACATGGAATCTCCTAACATGCCTGCGCAGAAGAGACGGTCCAGCTTCA CAGAGAGCGCTAGCTGCATGTCCATATCGGCCTCGTCTATACTGGACTGTAGTCAGACGCCCGACAGCTC AATGGCACTTGCTCCTGAGCCATGCACTCCTATGGAGATGGAAACCCCCAAGAAGCCTGCCGTACCTGCG CAACCCCTATCAAAGAGGCATATGACTGCCATGGAGTTACTGCAGACGGAGATCAACTATGTCAAGATAT TAGGCACCATCATCAATGTGTTCAAAGAACCTTTAGAAACCGAACAGACCGGTGGACCTATCTTAGCACA GGAGGAGATCAAGACCATCTTCAATCGTATCCCAGACATCTACGCTGTTCACTGCAGACTGAGGAACGAT GTCCAGGCTCTTATCGATGACTACTCTGAAGAGAAGAGCATCGGCCAAGTCTTCCTCAAACATTCTGCCG ATATGGGTAAGGCGTACCCATCCTTTGTCAACTTCTTTGAGTTAGCCAAGCAGACGGTCGTTCAGTGTGA CAAACAGAAGCCTAGGTTTCATGCTTTCCTCAAGATTGGTCAGAGTAAACCCGAGTGTGGTCGCCAGTCC CTGACCGAGCTGTTAATCCGTCCAGTCCAGAGGCTTCCTAGTATGATCCTTCTGCTCTCTGATCTATCCA AGAGAACGACAGAATCACATCCTGACTTCAGGTATCTCAAAGAGGGACTGGAGGCACTCAAGAAGGTCAC AGAGCAAATCAACGAGGACAAACGGAAGACGGAGGGCCACACCCAAATGTTTGACATCATGAATGAGATA GAGGGCGTCCCAGCCCACCTGCTGTCGGCGCATCGTCACTTCATCACCAAGATCGATGTCTCGGAGGTCG GGAAGGCAGACTCGTTTGGTGAGAAGGGAATCTGTATCACCATGTTCCTCTTCTCAGATACCCTAGAGAT CTGTAAGAAGCGTGTAAAGCACAGTAACATGAAGACATCCCAGAAGACCTTCAAGCACATAGAGCTTCTC AACCTCTCCTACATCAGAAGAGTTCTGGATATCCATGAGACGGACGAGTGTCACAATGCCTTTGCCCTGC TGTGTAAGCCTCCTATGGATGTACTTGAGAGGACTGATCGTCTCTATATGTTTGCAGTGTCTGGTGACGA GAACTGTAAGACAGAATGGCTCAAGATCCTATGCCAATACATGGCCAACGCAACATGTAAAACAGATGCT GAGAATTTCTTGTGCAAGATTTCTCCAGAGGATCTAGAGCTTTCTAAGAGTGACTTTGATGTGAGCAGAA AGAACAAGGCAGTCAGGGCGGCAAAGAGGGCGACCAAGAAGGTATCCAGGACGTTCTCCTTCAACCGGAC GCCACGGCGGGGGTCAATCCAGAAGGCGGTCAACAACGTGACGTCCACCTTCAGTCCCATGGTGTCCGGT GAGGGGATGAGCCCTCAGCAGTTTGGCAAGATGGGGGCGAGGCTAGCAGGGACCATGACACTCAAGGCTC TTTCTCCCCTGGCAAGAAGAACACCTCTCACGCCTCGTCACTTACAGAAGAGTCTAACCATGGGACCATC AGCCAGCAAAAAGCTTTGAAACTCATCACAATCAGGGTCCTACCTACCCTCAAGCGTGTCATTAATCATT GTCAACATTAAAAAAACATTACTTGGCACTATTTCTTATAGAAGTAAACTGTTTATGCCGAGTTAAAAAA AAAATATGCCTCTCTGTATTCTTGTATTTGCATTGCACAAGTGCTAGCTTAGCCATTGCGTTGGCTTGAA AATGCTATGACCGTATAAAGGTAAAATGTACATCACATCATTGGATTTTGCAGTTGCCAAACATTGTGGA AAACTATTAGAATTTATTCTACCTTCAAGAACCAATATGAATCTTCCTTTCAAGAACTGACTGCAGGAAC TTGCATTCTGATTGGTTGTTTGAAGACTTGCAATCAATTGGTTTGTATAATGTCATCGGAGAGTTAGACT GATGGACCTCCAAAACTCTTTATATTTGAATACAGATGTGTCTGCGAGGTTCAGCCTCCAGTAATTTAAA CGAGTATTTTTAAGAGTCTGACATGCAGATGATCATGGTCCTGTTTGGCAAAATGTATTCAGAGTTGAAC AAAATGATTTTCAAATGATATTATTTCTTCTCTCGTGTGTATTCAGGGATGTAAAGCTAACATAAAGCTA TATTATATCCAGGCTCTGCATGAACCCTATTTGGCTTGTGGTTTGAAACAAAATATTTAAGGTACTTGTC ATTAGACTCCTGTTAACATTTTAACATATTTAGGATCCAGAGTTATATCACATATAAAACTGTTGGTTTG ATAGATTACTGTTTATTTTATCATATTTTTAATGACTTGTACTTACCTTTTGCTATATCCTATTGCTTAA TATACAACTCACTCCTAAATCCTAATCAAATGACTTTAAACGCGGTCATTTTTGATTATTTACAGAGACT ATCCCACATTCTTTTTAAAAGAAAAAGCATGCAATAGTTTCCAGTGCTATCTAATTATTTTTAAGTACAG GATGTGCAGAACTGCACGTAAATGGGAAAAGAGTCAACTGCCCTTATCACTGTGTGCGCGCTAAAGTATT AAAAGCCTATTAATCTTTGGGTTTATTTGTCAGCGATAATTGCACAACATTTTTTTTAATTGAATTCTTT TTGCATCAAGTAACAAGGATATACCGTAGGAGTTTTGTTAGATAAAACAAATGATGCATGTTTTCTTTCA TTCAATACAGGATCTATAAGCTCTTTTTGAGGCTGTTTATGCACCATCGTACTCAGCCAAGTACAATAGG TATCATTTGTATACTATTTGTAATTAGTAGACTATTACATTGCAAAGAGGCGAAAAACTAAAATAGAAAA CTTAGTAACCGCTGTAGTGAAGGGATTCAGAACACCAAAATCTGTAGTTAGTCTTATAGATAAAACATAC ATGTAGTTAGATGCATTCATGCTTTTAACATTGTAGTAGCTACTAGCTAATAATCTTCTTTTTCATAATG CTGTGTAATTTATTTGTTTTTTGATGGTCAAAGCAAGGCTTGTAGTTGTTGCCATTATCAACATGGCACA ACTATTTCCAATGTCGCATTGTATGTTCGGAAATGGGCACATTCTAATTATGGCAAATATGTAGATAAGT AGTTAAAACAGACATGTAATTATAAAATATTTATATTTCTAGTGTCCATCTCTTGTTGCTGTATTCATAT CTTGTGCCTTGCTTTTCAGTTTGTCTGTTTGTTCTCCTCTCTGTGCATAGGCTCTCTCCGGCGTGAAAAC TCATGTACATTTCATTTGTAATATATTTCATTGCTTGCACTTTGTAGATATAATAATATATTAATCGTTA TTGCAGTATGGATGGAGTGGTCAATCCGTGATGAAATTGATGTATGAAAATGTTGACGGCCATCTTGGTT TGGACAAAGCTTTTTAAAAAATACTGAGATTATCTTCTTTGCTCTTTTATACAGTACTACCCTTTCAATG CTATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTCTATCTCTGTCGCTAACCAAATTTTGCTTTA AAACTGTTAAGAAATTACAAATCCCATTGTAGAAAGTTGAAGTATTTTTTGGTTGCTAAGGTAAATATAC ATATTCATCTCTCAGTATGACATTAATGTCTTAATATATTAATGTGGTAATCTAAAAATACATATTTTGC CAGGTCCGGGTAATAGTGATAGTGAAAATAGTGATAAGAGTGGCTATTTTATGATAGCAAACTTGTGGTA TATTAATCAAATTTTCTTTAACCAGCGCTTTGCAAAAACTTCCACAATTTGATTTTATGCACAAGAGTAT CTATGAATCAATGTACTACTGGTAATCAAGAAAATAACATTTATCAGCATTAAATTCTCATCCTGTATTA AAGGGGCTGTAGCATGACGAGACTCTGTGTCTTTCCTGTGGCCCGACTCACGTGCAGTTGTCCAAAAGAA GTCGTAGATGTCATTAACCAGTATTTGCCATGCTACAGCCCCTTTAATTAATATGTGACCTACAATGTAC A
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds