Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT118181.1 TSA: Strongylocentrotus purpuratus WHL22.194201.0 mRNA sequence ACAGTATTGGTCGAATCTTTCTCTGTAGGCCACGCCCCATCTCGACTCCCGATTGGTTAGGAGCGTTGTG TGCTGGTAACAATAGGCGAGTTGCGAGTGTGTGTGCGACCATGGGCGAACTGGGGTGTACAGCAGTGAGC GGGCAGGAGTTTCTTACACTGTAACCATTCTAGGATAGCTTGCCTCCTGTACACACCTTCGTGGCGTTTT CCTCCAAAGCGAAACAGAAGAGGCTCTTTACTTATCTCTTTAAGCTCATCATCAAGCTATCTCTTGGACC CCTAACGACCACAACACGTGATATCTGAGACATCATCATCAGTCATTGTACTATCATCAGTTTTCGTGGA ACAAGTCAGCTGCTTTATTATAACTACAGCGCCAATAAGTGAAATAATATTCTTCTTGCGGGATCAATTC ATCAAGTTTGAACTTGATCAGTTTTCATCATCTCGCATTGATTATATTTCACTGTCTGGATCTACCGATC ATATTGCAGAATTCATCTTTTAACCCAACTAAGGATTAATGCACGCTAAACGAGGCAAGGGGATTAATTT GGAAGCAGGCGGCGTCGACATTACCTCGGGGAAATAACATTAAGGACGGTGATAAGGATTTTGAGCTCTA CATTTCGTTCATTTTCACTAAATTATCTGGAGTTTACGTTAACATTCGGATGTACCATCATCTACATAGT CTAAATTGAATGGCATTTCATAAGGCTGCTTGATTATATTGAATATCATCAATTTTGGGAGCCGTTTTGA TTCGACGTGCTGAATTTGAGGAAGATTATTTACTGCAAGTTCCTGCTTCGGGTGTGGAGGTTGCATAGTG CTGTCGGTGACATTGTTGCCGCCGATTCCGTGCCGCTGACATGACCGTGTATAGTACCAGATATTGAAGC ACGATGGGGCACTCAGCCGAAGCAACGCCCATGGATAGATTATCCCCGGTGGGCTCCCCCGACCTCTCTG GAACAAATGTACTAAGTGGCACGAGCACCGGCGTGAGAGACTCCTGCAAATGTTCCCATTACGACGCCGA TGGAAGGCGCGTCTTCGAGCGCGTTGACCGCGCGCAATTCACTGATGTATCATCGTCTACTTCGTACCCA TGCGCGTCACACATGACGCATAACCAAACGAACTCGCTGTCGAGACCAGACGTCAGGCATTCGCGATCAC GGCGAACGCCGTCATCAGCAACAACATCCTTATCATCTTCAACATCCTCATCCTCATCACATACAGACTC TGTGTTTTCTTCGAAGAAGGCGGCGACGGCGACGACGCCGGACTTACGGCGGAATTCAAACGCGTCGTTG TCATGTTGTTGGTTCTCTCGAAGGATGTATATGGGAAATATTACGCCGTGGACTCTCAGTTTTATGTTCT ACCTCTTCGTAATTATATTGTCACATCAAGTGGAGTCAACACACAGTGTACCAGCGTTATCTCGGCGGGT GACGGTGGAGCAGCGAATGAGAAAAGTGAACTCATTGGAAGACTATTTGAATGCACTGAGCTTGAATGAT ACCGACACACCGAGGTCAAGATACTTTTTAAATAGGAGTCCATCAGCACTTAATAAGAGGAGTTATAGAC GACTTGGGCGAGCGGGATCAGCCGGTGGATCAAGCAGCGACAGTGCTTTCTTCGCCAGGTTAGAGGATGA GAATGCCCGAGTGCAGTGTCAACCTCGCGATCGTGTGGTGGATTCGTACGAGGAGCTGGGAATACCACGA GGCTATGGCGACTTCCTCTACCCGGAATGCATCGTGGTTCGTCGCTGCAAGCAAGGAGGATGCTGCGGGG ACGAGCGGGAGTGCGTGCCGTCAAGAACTACCAATATCACCATGAACTTCTTAAAAACCAGGCTGCAAAT CACCCGCGAGATCGTGCACGACTTGGAGTGCGAGTGCCAGGACAAACCGTCCTTCTGCCCCGAGCCGGTG GTCGACTGCCCGGACAACAAGGTGTGGTCCTACAGCGAGTGCACCTGCAAGTGTCGGAACAGGTGCCCCA AGCCGTTCCTGCAGGACGAGGATACGTGCGGATGCGATTGTCTCAGCCAGGACAGGAACTGCAAGAACAT CTACAGGGGAAGACGGAACGGAAAACTGTCGCGAGAAGAATGCGATTGTGTTCGGAAAGGCCTATGCGGT AAGCCACCTTGTATCAACGGAGGTTTCTCAATATCTGACTGTAAATGCATCAATTCAAACAGCTGAGAGA AGTTCCTGGCTCAACGAGATTCCTGAAGATATACCTTATACTCGTTAAAGGATTTGAACAGTTCATCTCG GTTTCAGAGATGCAAGGACTCTTACTATTTATTCTGAAACGTGGTACGATGTTACAAACAAGGAGGACAA TGCTTGCAAAACTTGAAATAATGCAACACAATGAAGTTATTCGAGAACAGTGAAAAACGGAGTAAGACAG AGACTCAACGAGCGCTGTTTTGCTTTCCGGAAGAACGACTACTGTCCTGTCTTGGCCGTAAGTGGCGTAC TATCCTAAAATCAGACGGAGAGGATTCACGGAATTTAATAATTTTTGTTTCGCGGTTCTTCTCTTTTCGG ATCACCCGACGTTACACCACTGCGTGCTTCTCACTTGGGAAGTAGTGATGGACTGATGGTCATACCAAAT ATGAATATTCGAAGCTTCGTGATCAACTTATATACTAAAAAATAATCATGAGGTTTGTTTTTATATCAAT GTATTCAATTTCAATTCTTGATTCGCTGCCGTGTATTAAAAAGTAAAGATGTATGTAATTTTTTACATAT GAAAACAGAATGATGTACATATTTAGGTAAATGTATCTAATATTATTAAATATACTATTTAATCACCTTT TACAAACAGTTATAATGTCCATATTGAGCGCATAGCAACTACTATCGTACATAGCTGTCGTAATGTTAGT ATTTTGAAATGTATAGCATCTCTTAGCCTTGTCATGTGTAGTGGGATTGGTGAGATTTCAAATTCGAAAT TTAGACAGAAATATCTTAATCGTTGACATGTAACAAAGTGTTGATAAATTTCAGAGAGAATTAAATAAAA ATGATATGTAAATGTCCATGTGTATAATAACGAAATGTTTTTAAATTAGCAGATAATTTGTTATCATTAT CATAATTTCCCTGTTGTGACTATATGAGACTTTGACATTGTCAACAACAATATTATTCGTTTTCATTAAT GTACAGAATTATTTTAAAAAAAACGAATATTTAATCTGTACATTTATGTAACTTAAGTTGACCATGGTTT AATTTATTCTTATTTTTTCATCGATATCAAAAACCCTTTGGCTATATAAAGCATAAAACTTCAATAGTTT CCATTTGCTATTGGACGTTAGCTCTGTTAGCTCTGTTCGTTTTTTGGTGAACACCAAAACTTATGTAATA ATCTTGTTCAAATATGGGTGCTATATAAAATGTATATAAACACTACCAGTTTTATTCTTATCATGTATAT TATGGGTCTATTTATGATATTTTCATTTTTATCTACAGTCTTTAACCGTTTCCTTGAAGTATAGTTGGAG CGGTTAAAATGCCATTAAGTGACAGAATAATCAAAATAAGGCAACTTGTTAGGATACACTCATATTGATT GTTTGCAATAAGTTGAATAAATTTATAAGGAATAGCCATACTGAGGTTAGTTTTCCACCAACATCATATT AGTATTTGAAATCGGATAATAATCATTGAATACTGCTTCATTTCATATCAATGTTTCGTATATGAGACCC CTTTGAAAAACAGCTTATAGCTGACAAGGGCAATCTGTCCCACGAGTGGAGAATAAATAAATAAATAATT TAAACATAGTTTGATCATTTTAACTTCATCAAGTCCCTTTTCCCCTTTTTGGGGCCTCGATTAATATTTT GGTCTTGACTTCAACAATTTTACTCCTTAAGACCTGTTGGCATCAAAATGCTGCAGACTGTATTTTTTCT TATTCAATTCGTTTATTGCTATTCTAAAATTTAAAAACTGATGTGAATATTTTGGTCATAATAATTATTT TAGGTAAACGGATGTGAGTATATATTAACCGTTATGCATATTGGTCTATTGAATATACAGTGTTTATGAT GGTGAGAAATATTGTATTTAGTACTTCGACAATTGCACCTGTATTGAAGTCTCAAGGCATTTTATTTTTG TATGCTTCTATTGCCCAAATCGTTCAATCAATTCTTTTTTCCCTGGGGGGGGGGGGGGGGTGGCGGGATC GATAGGCGGTGTAAGACCCTTTATGGAAATGTCAAAAATATTTCAAAAGTACTTTACGCCATAAAATAAT GTGAAGCCGTTAACAGTAATTTCATTTTTGTGAGCCTATCAATATCTGACGTATATAAATCATTCTATTT CTAATCATTAGATAGAAATAGATACCTTTGATTCTTCCGAAGTAGCAAAGCATGTACTTTCGAGTATGTG TAAATATTATGATTTAATCTTTATTTTTTAAAGTGTCTGTTGCATCAGCTTGATATATGATCATCTATTA ATATATGAGCTGGAATGATTGATTATAACATGTTTTATTCTAGTCCCCACATCTAGAAACTATAAACTCA AAGGCATTATACAACTATTCGACTACTACAAATCATTTTCAAACGTCGAAGTCGGATTTTCTACGACGGA ATTTTATGGATTTTGAAATACGATCCGAAATCAGATAAATGTCCCTTTTATTTCATCATTCCAAAGTCCC GTATAGAAATTTGTATCTCGTCTAACTTTAATTCCCAACATTCCAATAGAGATACCACTTTTGAAGGCAA GTACCACATAAACCCATAACAAACTTGACAACTTATCACTCAACGAAGCGTAGTAATTTCTGAAATACAT CTCCTCACGGAACCCCCCTTTAGAACGTCTTATCACCATTTCTATATTCTGCATGAAGTTTTAAAATAAA CGTAGATGAATTGTTTGTACACAGTCATATTTCATTCCCCGGTCGGGCCCTTTCATGCTGCACATAAGTC ACCGACAGGGGTTGGCTACTCTCTGAAAGATATTTTTTAGAGATTTATGAATCTTAGAATTTCCCGCCTG TGGTTATCTGAACTCAAAACGGTTCCAGCGTTCACCGACACCAGAAACATATATAACATTTTAAAGTTTG CAGATATTGACCCGTTGTAGTTAAAGTCCCCTGTAAACAATTGAAAAGAGTTCAATATGGGGATGATTGA GTTTTACCGGTGTTTTTTTTTAGTTGATAGGATGATAATTAAAGAGAAGGCTTTGGAATAAGCTCTCATC GCCATAATTTGGGTCAAGATAAATCATTTTAAAAAGAAAAAAAACTGGGTAATTTAGATGATATGAGTGT CTTGAATAATAGATCAAGTTTGGTGATTATAATTCATCCTTTAATTGCTTCCGATACGTGAGCTAATGAT TATCAGTACTGTATGCCTGTTGATTCAATATTTAGAGTCTGTTAGTGTATTCTTATTGTCTATTTTCATA CAAAACATCATGAAATGATGTTCATCTTTTATCTAATCATGTACTTAAATCGAAAAGGATATACTGTGTT GGTCCTTTCAATGCGTTTTAACCCAGGCTGCAAACAAAAAAGGCTGAGACGGATGAGCTGTACAAGTTTA GTTTTCGAGCAATTTATTATACATATATATTTTTTTTGAAAATTTATTACTATAACTTGAAAAAAAATGT TTCTGTTTTACTGGGCATTTATGCATATCTAGGTGAATACAATCCACAATTTATTGAAACAAAATGTATT TTCATTCAGTCGGTATAATTAAGTCTGTAGTCCCATTTTCATTGTTTATTCATTATAAATCAAAATAAAA TACCGGTCTATGTTTCCTGATAATCCCGTCATGTATGGCGTGTAAACAATAGTGTCACAGTACAAAGGTG CGCTTCGTGGTGAAATAAATATTTTAAGTCAGTAATGATAATTGTTTTCG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds